FvH4_7g15840

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011168
Physical Location & Seq
Forward (+)
13676849 .. 13678852
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15840.t2

Sequence Viewer

Length: 762 bp
ATGTCCCAGCAATCACCAGTAAAACCGGTGCTGAAGAAGCCACCGGGATACAGAGACCCGAACCAACAGCCTAGACTGGTTCCCGGCCAGACTCCCCGAAAACCGGTTCCCCTCCCTCCCTCATTTCAGCCACTACCGAAGCCCCGGCGCAACAGTTGCTGCCGTGTCTTTTGTTGGGTGTCTTGCATTTTAATCCTTGTGATCATCGTCGTCGTAGCGCTGGCTGCCGGAATATTCTTCCTCTTATTCGATCCAAGGCTCCCTCTGGTTTACTTGCGTTCGTTTCAGATACCTCTATTCAATACCACGGTGAAATCCGGAGGGACTTACCTCGACTCATGGACAGTTCCGGAGATGGAGGTGAAGAACCCTAATGGTAAGTTAGACATATTCTACTCAGTGTTGCATGCCTACGTCAGTGTCGGGGACCCGAACGACATAGGGTTGGTGTTGGGGATGAAAGAGCTGGGAGGGTTTACGCAGAAGTCGAGGAACACGACGACTGTTAAGTTTGATTACGTGGTGAAGGATCGGCAGCTGAACGACGCGGTGGCGAAGAAGCTGAGGAGTCAGTATGAGGGGAAAGTGATGAAGGTTGGGGTGGAGATGAAGACCAAGGTAGGTTATGTGGTGAAGGGGTGGAGGATAGGTACGATGGATATTGATGTAGAATGTGGGGATGTCACGATGAAGGAGATTCATACTGGCAGTACCATGCCCAAGTGTAAAATGCACGCCTACAAATGGATCACCATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

254

Amino Acids

28.48

Weight (kDa)

9.66

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 120 - 225 9.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 548
AccIII TCCGGA 2 cut(s) 317, 349
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 245, 537, 755
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 652, 712
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 103, 744
AgeI ACCGGT 2 cut(s) 25, 103
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 3 cut(s) 466, 538, 562
AluI AGCT 3 cut(s) 466, 538, 562
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 3 cut(s) 245, 537, 755
AlwNI CAGNNNCTG 1 cut(s) 159
Aor13HI TCCGGA 2 cut(s) 317, 349
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 159, 224, 535
AsiGI ACCGGT 2 cut(s) 25, 103
AspLEI GCGC 2 cut(s) 150, 220
AspS9I GGNCC 1 cut(s) 427
AsuC2I CCSGG 3 cut(s) 45, 84, 145
AsuHPI GGTGA 6 cut(s) 6, 322, 373, 535, 643, 742
AvaII GGWCC 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 3 cut(s) 146, 211, 547
BccI CCATC 3 cut(s) 349, 649, 761
BceAI ACGGC 1 cut(s) 147
BciVI GTATCC 1 cut(s) 41
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 3 cut(s) 45, 84, 145
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 221
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 3 cut(s) 160, 225, 536
BlsI GCNGC 3 cut(s) 161, 226, 537
Bme1390I CCNGG 3 cut(s) 45, 84, 145
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 5 cut(s) 81, 108, 260, 428, 429
BmrFI CCNGG 3 cut(s) 45, 84, 145
BpiI GAAGAC 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 563
BpuMI CCSGG 3 cut(s) 45, 84, 145
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 4 cut(s) 143, 254, 306, 615
BsaWI WCCGGW 4 cut(s) 25, 103, 317, 349
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 744
Bse118I RCCGGY 2 cut(s) 25, 103
Bse1I ACTGG 3 cut(s) 17, 81, 709
Bse8I GATNNNNATC 1 cut(s) 752
BseAI TCCGGA 2 cut(s) 317, 349
BseDI CCNNGG 4 cut(s) 143, 254, 306, 615
BseGI GGATG 3 cut(s) 462, 685, 753
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 2 cut(s) 103, 744
BseMII CTCAG 2 cut(s) 411, 554
BseNI ACTGG 3 cut(s) 17, 81, 709
BseRI GAGGAG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 146, 211, 547
BseYI CCCAGC 2 cut(s) 6, 466
Bsh1236I CGCG 1 cut(s) 548
BshFI GGCC 1 cut(s) 87
BshTI ACCGGT 2 cut(s) 25, 103
BsiSI CCGG 8 cut(s) 26, 44, 84, 104, 145, 228, 318, 350
BslFI GGGAC 2 cut(s) 337, 440
BslI CCNNNNNNNGG 2 cut(s) 103, 744
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 337, 440
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 48
Bsp13I TCCGGA 2 cut(s) 317, 349
Bsp143I GATC 4 cut(s) 201, 250, 529, 747
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 410, 555
BspEI TCCGGA 2 cut(s) 317, 349
BspFNI CGCG 1 cut(s) 548
BspLI GGNNCC 5 cut(s) 81, 108, 260, 428, 429
BspPI GGATC 3 cut(s) 245, 537, 755
BspTNI GGTCTC 1 cut(s) 48
BsrFI RCCGGY 2 cut(s) 25, 103
BsrI ACTGG 3 cut(s) 17, 81, 709
BssAI RCCGGY 2 cut(s) 25, 103
BssECI CCNNGG 4 cut(s) 143, 254, 306, 615
BssMI GATC 4 cut(s) 201, 250, 529, 747
BssT1I CCWWGG 2 cut(s) 254, 615
Bst4CI ACNGT 4 cut(s) 155, 310, 346, 505
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 222, 408, 735
BstDEI CTNAG 2 cut(s) 397, 563
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 462, 685, 753
BstFNI CGCG 1 cut(s) 548
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 2 cut(s) 150, 220
BstKTI GATC 4 cut(s) 204, 253, 532, 750
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 4 cut(s) 201, 250, 529, 747
BstMWI GCNNNNNNNGC 3 cut(s) 37, 156, 224
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 43, 82, 143
BstUI CGCG 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 146, 211, 547
BstV2I GAAGAC 1 cut(s) 617
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 462, 685, 753
BtsIMutI CAGTG 3 cut(s) 405, 424, 757
Cac8I GCNNGC 3 cut(s) 222, 408, 735
CaiI CAGNNNCTG 1 cut(s) 159
CfoI GCGC 2 cut(s) 150, 220
Cfr10I RCCGGY 2 cut(s) 25, 103
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 651, 711
CspAI ACCGGT 2 cut(s) 25, 103
CviAII CATG 3 cut(s) 339, 407, 715
CviQI GTAC 2 cut(s) 651, 711
DdeI CTNAG 2 cut(s) 397, 563
DpnI GATC 4 cut(s) 203, 252, 531, 749
DpnII GATC 4 cut(s) 201, 250, 529, 747
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 254, 615
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 427
Eco47III AGCGCT 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 254, 615
ErhI CCWWGG 2 cut(s) 254, 615
FaeI CATG 3 cut(s) 342, 410, 718
FaiI YATR 8 cut(s) 340, 389, 408, 440, 576, 627, 702, 716
FaqI GGGAC 2 cut(s) 337, 440
FatI CATG 3 cut(s) 338, 406, 714
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 160, 225, 536
FokI GGATG 3 cut(s) 469, 692, 740
Fsp4HI GCNGC 3 cut(s) 160, 225, 536
FspBI CTAG 1 cut(s) 72
GlaI GCGC 2 cut(s) 149, 219
GluI GCNGC 3 cut(s) 160, 225, 536
GsaI CCCAGC 2 cut(s) 10, 470
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 1 cut(s) 87
HapII CCGG 8 cut(s) 26, 44, 84, 104, 145, 228, 318, 350
HgaI GACGC 1 cut(s) 554
HhaI GCGC 2 cut(s) 150, 220
Hin1II CATG 3 cut(s) 342, 410, 718
Hin6I GCGC 2 cut(s) 148, 218
HinP1I GCGC 2 cut(s) 148, 218
HinfI GANTC 4 cut(s) 91, 335, 568, 697
HpaII CCGG 8 cut(s) 26, 44, 84, 104, 145, 228, 318, 350
HphI GGTGA 6 cut(s) 6, 322, 373, 535, 643, 742
Hpy166II GTNNAC 2 cut(s) 271, 477
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 3 cut(s) 318, 350, 685
Hpy8I GTNNAC 2 cut(s) 271, 477
Hpy99I CGWCG 4 cut(s) 212, 215, 502, 548
HpyAV CCTTC 4 cut(s) 520, 586, 628, 685
HpyCH4III ACNGT 4 cut(s) 155, 310, 346, 505
HpyCH4IV ACGT 2 cut(s) 414, 519
HpyCH4V TGCA 3 cut(s) 186, 406, 733
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 156, 224
HpyF3I CTNAG 2 cut(s) 397, 563
HpySE526I ACGT 2 cut(s) 414, 519
Hsp92II CATG 3 cut(s) 342, 410, 718
HspAI GCGC 2 cut(s) 148, 218
KflI GGGWCCC 1 cut(s) 427
Kpn2I TCCGGA 2 cut(s) 317, 349
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 4 cut(s) 201, 250, 529, 747
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 3 cut(s) 146, 211, 547
MaeI CTAG 1 cut(s) 72
MaeII ACGT 2 cut(s) 414, 519
MaeIII GTNAC 1 cut(s) 682
MalI GATC 4 cut(s) 203, 252, 531, 749
MboI GATC 4 cut(s) 201, 250, 529, 747
MboII GAAGA 5 cut(s) 46, 229, 376, 568, 622
MlyI GAGTC 3 cut(s) 85, 329, 577
MroI TCCGGA 2 cut(s) 317, 349
MseI TTAA 2 cut(s) 191, 507
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 8 cut(s) 26, 44, 84, 104, 145, 228, 318, 350
MspR9I CCNGG 3 cut(s) 45, 84, 145
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 3 cut(s) 37, 156, 224
NciI CCSGG 3 cut(s) 45, 84, 145
NdeII GATC 4 cut(s) 201, 250, 529, 747
NlaIII CATG 3 cut(s) 342, 410, 718
NlaIV GGNNCC 5 cut(s) 81, 108, 260, 428, 429
NmuCI GTSAC 1 cut(s) 682
NspI RCATGY 1 cut(s) 410
PaeI GCATGC 1 cut(s) 410
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 494
PfeI GAWTC 1 cut(s) 697
PinAI ACCGGT 2 cut(s) 25, 103
PkrI GCNGC 3 cut(s) 161, 226, 537
PleI GAGTC 3 cut(s) 85, 329, 576
PpsI GAGTC 3 cut(s) 85, 329, 576
Ppu21I YACGTR 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
PspFI CCCAGC 2 cut(s) 6, 466
PspN4I GGNNCC 5 cut(s) 81, 108, 260, 428, 429
PspPI GGNCC 1 cut(s) 427
PspPPI RGGWCCY 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 2 cut(s) 652, 712
RsaNI GTAC 2 cut(s) 651, 711
SaqAI TTAA 2 cut(s) 191, 507
SatI GCNGC 3 cut(s) 160, 225, 536
Sau3AI GATC 4 cut(s) 201, 250, 529, 747
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 3 cut(s) 85, 329, 577
ScrFI CCNGG 3 cut(s) 45, 84, 145
SinI GGWCC 1 cut(s) 427
SphI GCATGC 1 cut(s) 410
SsiI CCGC 1 cut(s) 548
SspI AATATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 43, 82, 143
StyI CCWWGG 2 cut(s) 254, 615
TaaI ACNGT 4 cut(s) 155, 310, 346, 505
TaiI ACGT 2 cut(s) 417, 522
TaqI TCGA 3 cut(s) 249, 333, 488
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 2 cut(s) 191, 507
Tru9I TTAA 2 cut(s) 191, 507
TscAI CASTG 2 cut(s) 405, 424
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 3 cut(s) 159, 224, 535
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 5 cut(s) 473, 605, 623, 689, 704
TspRI CASTG 2 cut(s) 405, 424
VpaK11BI GGWCC 1 cut(s) 427
XceI RCATGY 1 cut(s) 410
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.