Prupe.2G183000_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011168
Physical Location & Seq
Forward (+)
22529870 .. 22532174
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G183000.1

Sequence Viewer

Length: 762 bp
ATGGCCCAACAATCCCCGGTTAAACCGGTGCTCCAGAAACCACCGGGTTACAGGACCCCAAACTACCCGGCCCAACCCGTACCAGGTCCGCCGCCGCCGCGAAAACCCGTCTACCCGCCTACTCTCCGCCAAAAGCAGAAAAAACGAGGGGGCAGCTGCTGCAAAATATGCTGCTGCGTCTTCTGCGCCTTCCTCCTCATCGTCGTCATCCTCGTCGCCCTCGCCGGCGGGATCTTCTACCTCCTCTTCGACCCGCGCCTCCCGGCCTTCTACTTGATATCGTTCCAGATCCCCAAATTCGACGCCGTTTCGAAGTCCGACGGGACCCACCTCGACGTCCAGGCGGTGACGAGCGTGGAAGTGAAGAACCCAAATCCCAAATTGGACATTTACTACAGCGAAGGGTTCGAGATGTCGCTGAGCATCGGGGACGAGAACGACGGCGGATTGGGGATAGGTACGAAGGAGGTGAAGGGGTTTACGCAGCGGCACCGGAACACGACGTACGTGAAGGTGGAGAGCGGGGTGAGGAACAAGGTAGTGGAGCAGCCGGTGGGGAAGAAGCTGCTGGGGCAGTTCAAGAGCAAGGAGATAAAGGTGGCGCTGGAGGGGAAGACGAGGGTTGGGTATGTGATCCAAGGGTGGAGGGTGGGGACGATGCAGATCAATGTGTTGTGTGGTGGTGTGAGGTTGAAGAATGTGGATGCTGGAGACATGCCCAAGTGCACCATCAATGCCTTCAAATGGATCAACATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

254

Amino Acids

27.94

Weight (kDa)

9.66

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 489
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 111
AccII CGCG 2 cut(s) 100, 256
AclWI GGATC 4 cut(s) 239, 283, 628, 755
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 2 cut(s) 303, 336
AfaI GTAC 3 cut(s) 81, 460, 506
AfiI CCNNNNNNNGG 2 cut(s) 83, 744
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 580, 694, 742
AjnI CCWGG 2 cut(s) 82, 339
AluBI AGCT 2 cut(s) 156, 565
AluI AGCT 2 cut(s) 156, 565
Alw21I GWGCWC 2 cut(s) 33, 728
Alw26I GTCTC 1 cut(s) 705
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 4 cut(s) 239, 283, 628, 755
AlwNI CAGNNNCTG 1 cut(s) 159
AoxI GGCC 3 cut(s) 3, 69, 264
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 8 cut(s) 153, 156, 159, 171, 174, 484, 547, 565
ApoI RAATTY 1 cut(s) 296
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 188, 258, 604
AspS9I GGNCC 5 cut(s) 4, 54, 70, 86, 324
AsuC2I CCSGG 4 cut(s) 17, 45, 68, 263
AsuHPI GGTGA 3 cut(s) 358, 481, 538
AsuII TTCGAA 1 cut(s) 311
AvaII GGWCC 3 cut(s) 54, 86, 324
BaeGI GKGCMC 1 cut(s) 728
BanI GGYRCC 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 172, 620
Bbv12I GWGCWC 2 cut(s) 33, 728
BbvI GCAGC 8 cut(s) 143, 146, 158, 161, 165, 496, 552, 559
BccI CCATC 1 cut(s) 737
BceAI ACGGC 2 cut(s) 290, 457
BciT130I CCWGG 2 cut(s) 84, 341
BcnI CCSGG 4 cut(s) 17, 45, 68, 263
BcoDI GTCTC 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 605
BlpI GCTNAGC 1 cut(s) 419
Bme1390I CCNGG 6 cut(s) 17, 45, 68, 84, 263, 341
Bme18I GGWCC 3 cut(s) 54, 86, 324
BmgT120I GGNCC 5 cut(s) 4, 54, 70, 86, 324
BmiI GGNNCC 4 cut(s) 56, 325, 326, 491
BmrFI CCNGG 6 cut(s) 17, 45, 68, 84, 263, 341
BmsI GCATC 3 cut(s) 432, 648, 694
BpiI GAAGAC 2 cut(s) 172, 620
BpmI CTGGAG 3 cut(s) 17, 626, 729
Bpu1102I GCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 311
BpuMI CCSGG 4 cut(s) 17, 45, 68, 263
BsaAI YACGTR 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 662
BsaHI GRCGYC 2 cut(s) 303, 336
BsaJI CCNNGG 2 cut(s) 15, 637
BsaWI WCCGGW 2 cut(s) 25, 492
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 744
Bse118I RCCGGY 3 cut(s) 25, 224, 550
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 2 cut(s) 84, 341
BseDI CCNNGG 2 cut(s) 15, 637
BseGI GGATG 2 cut(s) 207, 709
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 2 cut(s) 83, 744
BseMII CTCAG 1 cut(s) 410
BseRI GAGGAG 2 cut(s) 185, 233
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 8 cut(s) 143, 146, 158, 161, 165, 496, 552, 559
BseYI CCCAGC 1 cut(s) 568
Bsh1236I CGCG 2 cut(s) 100, 256
BshFI GGCC 3 cut(s) 5, 71, 266
BshNI GGYRCC 1 cut(s) 489
BshTI ACCGGT 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 33, 728
BsiSI CCGG 8 cut(s) 17, 26, 44, 68, 225, 263, 493, 551
BsiWI CGTACG 1 cut(s) 504
BslFI GGGAC 3 cut(s) 337, 443, 667
BslI CCNNNNNNNGG 2 cut(s) 83, 744
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 3 cut(s) 337, 443, 667
BsnI GGCC 3 cut(s) 5, 71, 266
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 33, 728
Bsp143I GATC 5 cut(s) 231, 288, 633, 663, 747
Bsp1720I GCTNAGC 1 cut(s) 419
BspANI GGCC 3 cut(s) 5, 71, 266
BspCNI CTCAG 1 cut(s) 411
BspFNI CGCG 2 cut(s) 100, 256
BspLI GGNNCC 4 cut(s) 56, 325, 326, 491
BspPI GGATC 4 cut(s) 239, 283, 628, 755
BspT104I TTCGAA 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 522
BsrFI RCCGGY 3 cut(s) 25, 224, 550
BssAI RCCGGY 3 cut(s) 25, 224, 550
BssECI CCNNGG 2 cut(s) 15, 637
BssMI GATC 5 cut(s) 231, 288, 633, 663, 747
BssNI GRCGYC 2 cut(s) 303, 336
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 2 cut(s) 84, 341
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 2 cut(s) 303, 336
BstAPI GCANNNNNTGC 2 cut(s) 159, 168
BstBAI YACGTR 1 cut(s) 508
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 2 cut(s) 207, 709
BstFNI CGCG 2 cut(s) 100, 256
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 3 cut(s) 188, 258, 604
BstKTI GATC 5 cut(s) 234, 291, 636, 666, 750
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 5 cut(s) 231, 288, 633, 663, 747
BstMWI GCNNNNNNNGC 5 cut(s) 97, 159, 168, 183, 571
BstNI CCWGG 2 cut(s) 84, 341
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 6 cut(s) 15, 43, 66, 82, 261, 339
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 2 cut(s) 100, 256
BstV1I GCAGC 8 cut(s) 143, 146, 158, 161, 165, 496, 552, 559
BstV2I GAAGAC 2 cut(s) 172, 620
BstX2I RGATCY 2 cut(s) 231, 288
BstYI RGATCY 2 cut(s) 231, 288
BsuRI GGCC 3 cut(s) 5, 71, 266
BtsCI GGATG 2 cut(s) 207, 709
Cac8I GCNNGC 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 159
CfoI GCGC 3 cut(s) 188, 258, 604
Cfr10I RCCGGY 3 cut(s) 25, 224, 550
Cfr13I GGNCC 5 cut(s) 4, 54, 70, 86, 324
CseI GACGC 2 cut(s) 166, 311
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 3 cut(s) 80, 459, 505
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 1 cut(s) 715
CviJI RGCY 6 cut(s) 5, 71, 156, 266, 550, 565
CviKI_1 RGCY 6 cut(s) 5, 71, 156, 266, 550, 565
CviQI GTAC 3 cut(s) 80, 459, 505
DdeI CTNAG 1 cut(s) 419
DpnI GATC 5 cut(s) 233, 290, 635, 665, 749
DpnII GATC 5 cut(s) 231, 288, 633, 663, 747
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 3 cut(s) 78, 116, 459
Eco130I CCWWGG 1 cut(s) 637
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 54, 86, 324
EcoO109I RGGNCCY 2 cut(s) 54, 324
EcoRII CCWGG 2 cut(s) 82, 339
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 1 cut(s) 718
FaiI YATR 3 cut(s) 169, 630, 716
FaqI GGGAC 3 cut(s) 337, 443, 667
FatI CATG 1 cut(s) 714
FauI CCCGC 4 cut(s) 123, 221, 261, 515
FblI GTMKAC 1 cut(s) 111
FokI GGATG 2 cut(s) 194, 716
GlaI GCGC 3 cut(s) 187, 257, 603
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 3 cut(s) 17, 626, 729
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 3 cut(s) 5, 71, 266
HapII CCGG 8 cut(s) 17, 26, 44, 68, 225, 263, 493, 551
HgaI GACGC 2 cut(s) 166, 311
HhaI GCGC 3 cut(s) 188, 258, 604
Hin1I GRCGYC 2 cut(s) 303, 336
Hin1II CATG 1 cut(s) 718
Hin6I GCGC 3 cut(s) 186, 256, 602
HinP1I GCGC 3 cut(s) 186, 256, 602
HpaII CCGG 8 cut(s) 17, 26, 44, 68, 225, 263, 493, 551
HphI GGTGA 3 cut(s) 358, 481, 538
Hpy166II GTNNAC 3 cut(s) 112, 480, 726
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 34, 286, 409, 580
Hpy8I GTNNAC 3 cut(s) 112, 480, 726
Hpy99I CGWCG 7 cut(s) 206, 218, 305, 323, 338, 443, 505
HpyAV CCTTC 7 cut(s) 199, 277, 395, 457, 466, 505, 748
HpyCH4IV ACGT 3 cut(s) 336, 503, 507
HpyCH4V TGCA 3 cut(s) 162, 661, 726
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 159, 168, 183, 571
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 3 cut(s) 336, 503, 507
Hsp92I GRCGYC 2 cut(s) 303, 336
Hsp92II CATG 1 cut(s) 718
HspAI GCGC 3 cut(s) 186, 256, 602
KflI GGGWCCC 1 cut(s) 324
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 5 cut(s) 231, 288, 633, 663, 747
LmnI GCTCC 2 cut(s) 36, 544
Lsp1109I GCAGC 8 cut(s) 143, 146, 158, 161, 165, 496, 552, 559
LweI GCATC 3 cut(s) 432, 648, 694
MabI ACCWGGT 1 cut(s) 82
MaeII ACGT 3 cut(s) 336, 503, 507
MaeIII GTNAC 2 cut(s) 47, 346
MalI GATC 5 cut(s) 233, 290, 635, 665, 749
MbiI CCGCTC 1 cut(s) 522
MboI GATC 5 cut(s) 231, 288, 633, 663, 747
MboII GAAGA 7 cut(s) 172, 226, 238, 376, 571, 625, 706
MflI RGATCY 2 cut(s) 231, 288
MhlI GDGCHC 2 cut(s) 33, 728
MluCI AATT 2 cut(s) 296, 380
MmeI TCCRAC 1 cut(s) 342
MreI CGCCGGCG 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 156, 487
MspI CCGG 8 cut(s) 17, 26, 44, 68, 225, 263, 493, 551
MspR9I CCNGG 6 cut(s) 17, 45, 68, 84, 263, 341
MvaI CCWGG 2 cut(s) 84, 341
MvnI CGCG 2 cut(s) 100, 256
MwoI GCNNNNNNNGC 5 cut(s) 97, 159, 168, 183, 571
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 4 cut(s) 17, 45, 68, 263
NdeII GATC 5 cut(s) 231, 288, 633, 663, 747
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 4 cut(s) 56, 325, 326, 491
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 718
NspV TTCGAA 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 226
Pfl23II CGTACG 1 cut(s) 504
PinAI ACCGGT 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 508
PpuMI RGGWCCY 2 cut(s) 54, 324
Psp5II RGGWCCY 2 cut(s) 54, 324
Psp6I CCWGG 2 cut(s) 82, 339
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 2 cut(s) 82, 339
PspLI CGTACG 1 cut(s) 504
PspN4I GGNNCC 4 cut(s) 56, 325, 326, 491
PspPI GGNCC 5 cut(s) 4, 54, 70, 86, 324
PspPPI RGGWCCY 2 cut(s) 54, 324
PsrI GAACNNNNNNTAC 2 cut(s) 488, 520
PstNI CAGNNNCTG 1 cut(s) 159
PsuI RGATCY 2 cut(s) 231, 288
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 3 cut(s) 81, 460, 506
RsaNI GTAC 3 cut(s) 80, 459, 505
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 5 cut(s) 231, 288, 633, 663, 747
Sau96I GGNCC 5 cut(s) 4, 54, 70, 86, 324
ScrFI CCNGG 6 cut(s) 17, 45, 68, 84, 263, 341
SduI GDGCHC 2 cut(s) 33, 728
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 3 cut(s) 432, 648, 694
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 311
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 3 cut(s) 54, 86, 324
Sse9I AATT 2 cut(s) 296, 380
StyD4I CCNGG 6 cut(s) 15, 43, 66, 82, 261, 339
StyI CCWWGG 1 cut(s) 637
TaiI ACGT 3 cut(s) 339, 506, 510
TaqI TCGA 5 cut(s) 249, 300, 311, 333, 408
TasI AATT 2 cut(s) 296, 380
TauI GCSGC 4 cut(s) 94, 97, 100, 490
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 8 cut(s) 153, 156, 159, 171, 174, 484, 547, 565
Tsp45I GTSAC 1 cut(s) 346
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 3 cut(s) 54, 86, 324
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 718
XmiI GTMKAC 1 cut(s) 111
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.