MD01G1075000.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011168
Physical Location & Seq
Forward (+)
18111095 .. 18113483
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1075000.v1.1.491

Sequence Viewer

Length: 756 bp
ATGATGCAACAACCGCCCATTAAACCGGTTCTCCAGAAACCTCCAGGATACGGATACCCGCACCAACCGGGCCGGCCCGTACCCAGTCCGCCAGGCCGAAAGCCCAACATCCCCCCTTCCTTCCGCCCACAGCGCACCCGGCGGAGTAGCTGCTACTGCATATGCTGCTGCGTCTTCTGCGCCTTCCTCCTCATCGTCATCATCCTCGCCGCCCTCGCCGGCGGCATCTTCTACCTCCTATTTGACCCCCGGCTCCCGGCCTTCTACCTCCTCTCCTTCCAGATCCCCAAATTCGAACCCGTCTCCAAACCTGATGGGACCCACCTCGACGTCCAGGCTGTCACCAGTGTCGAGGTGAGGAACCCCAACCCGAAACTCGACATCTTCTACCGCGAGGGGATCGAGATGCACGCGATCCTCGGGGACGAGAACGACGTAGGTTTGGGGCTGGGTTCAAAGCTGCTCAAAGGGTTCACGCATAGGCACCGGAACACGACGAATTTCAAGATGGATATGAGGGTGAGGAACAAAGTGGTGGATCAGACGGTGGGGAGAAGGCTGGCGGCGCAGCTGAAGAGTAAGGAGATAAAGGTGGCGGTGGAGGGAAAGACGAGGATTGGGTACGTGATCAAAGGGTGGAGGGTTGGGACGATGCAGATCAATGTCTTGTGTGGTGGCGTGAAGTTGAAGGTTGTTGATGCAGGGGAAATGCCCAAGTGTACCATCAATGCATTCAAATGGATCAACATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

252

Amino Acids

28.14

Weight (kDa)

9.91

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 117 - 215 1.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 483
AccII CGCG 2 cut(s) 393, 413
AclWI GGATC 5 cut(s) 277, 407, 409, 546, 749
AcsI RAATTY 2 cut(s) 290, 499
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 3 cut(s) 81, 623, 721
AfiI CCNNNNNNNGG 2 cut(s) 50, 256
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 4 cut(s) 456, 505, 688, 736
AjnI CCWGG 3 cut(s) 43, 91, 333
AluBI AGCT 3 cut(s) 150, 460, 571
AluI AGCT 3 cut(s) 150, 460, 571
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 5 cut(s) 277, 407, 409, 546, 749
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 4 cut(s) 70, 74, 94, 258
ApeKI GCWGC 5 cut(s) 150, 165, 168, 460, 568
ApoI RAATTY 2 cut(s) 290, 499
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 135, 182, 568
AspS9I GGNCC 3 cut(s) 70, 75, 318
AsuC2I CCSGG 4 cut(s) 69, 139, 250, 257
AsuHPI GGTGA 3 cut(s) 334, 367, 532
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 5 cut(s) 137, 152, 155, 447, 580
BccI CCATC 3 cut(s) 308, 502, 731
BciT130I CCWGG 3 cut(s) 45, 93, 335
BciVI GTATCC 2 cut(s) 41, 47
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 4 cut(s) 69, 139, 250, 257
BcoDI GTCTC 1 cut(s) 307
BfuI GTATCC 2 cut(s) 41, 47
BisI GCNGC 8 cut(s) 151, 166, 169, 210, 223, 461, 564, 569
BlsI GCNGC 8 cut(s) 152, 167, 170, 211, 224, 462, 565, 570
Bme1390I CCNGG 7 cut(s) 45, 69, 93, 139, 250, 257, 335
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 3 cut(s) 70, 75, 318
BmiI GGNNCC 5 cut(s) 254, 319, 320, 362, 485
BmrFI CCNGG 7 cut(s) 45, 69, 93, 139, 250, 257, 335
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 4 cut(s) 234, 396, 642, 688
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 17, 27
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 4 cut(s) 69, 139, 250, 257
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 656
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 248, 418
BsaWI WCCGGW 2 cut(s) 25, 486
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 257, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 256
Bse118I RCCGGY 3 cut(s) 25, 72, 218
Bse1I ACTGG 2 cut(s) 84, 345
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 3 cut(s) 45, 93, 335
BseDI CCNNGG 2 cut(s) 248, 418
BseGI GGATG 2 cut(s) 108, 201
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 2 cut(s) 50, 256
BseNI ACTGG 2 cut(s) 84, 345
BseRI GAGGAG 2 cut(s) 179, 260
BseXI GCAGC 5 cut(s) 137, 152, 155, 447, 580
BseYI CCCAGC 1 cut(s) 448
Bsh1236I CGCG 2 cut(s) 393, 413
BshFI GGCC 4 cut(s) 72, 76, 96, 260
BshNI GGYRCC 1 cut(s) 483
BshTI ACCGGT 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 8 cut(s) 26, 68, 73, 139, 219, 250, 257, 487
BslFI GGGAC 3 cut(s) 331, 437, 661
BslI CCNNNNNNNGG 2 cut(s) 50, 256
BsmAI GTCTC 1 cut(s) 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 3 cut(s) 331, 437, 661
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 4 cut(s) 72, 76, 96, 260
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BspANI GGCC 4 cut(s) 72, 76, 96, 260
BspFNI CGCG 2 cut(s) 393, 413
BspLI GGNNCC 5 cut(s) 254, 319, 320, 362, 485
BspPI GGATC 5 cut(s) 277, 407, 409, 546, 749
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 483
BsrFI RCCGGY 3 cut(s) 25, 72, 218
BsrI ACTGG 2 cut(s) 84, 345
BssAI RCCGGY 3 cut(s) 25, 72, 218
BssECI CCNNGG 2 cut(s) 248, 418
BssMI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 45, 93, 335
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 625
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 4 cut(s) 74, 220, 411, 561
BstF5I GGATG 2 cut(s) 108, 201
BstFNI CGCG 2 cut(s) 393, 413
BstHHI GCGC 3 cut(s) 135, 182, 568
BstKTI GATC 7 cut(s) 285, 402, 417, 541, 630, 660, 744
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BstMWI GCNNNNNNNGC 8 cut(s) 13, 132, 139, 156, 165, 177, 215, 565
BstNI CCWGG 3 cut(s) 45, 93, 335
BstSCI CCNGG 7 cut(s) 43, 67, 91, 137, 248, 255, 333
BstUI CGCG 2 cut(s) 393, 413
BstV1I GCAGC 5 cut(s) 137, 152, 155, 447, 580
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 2 cut(s) 41, 47
BsuRI GGCC 4 cut(s) 72, 76, 96, 260
BtsCI GGATG 2 cut(s) 108, 201
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 4 cut(s) 74, 220, 411, 561
CfoI GCGC 3 cut(s) 135, 182, 568
Cfr10I RCCGGY 3 cut(s) 25, 72, 218
Cfr13I GGNCC 3 cut(s) 70, 75, 318
CseI GACGC 1 cut(s) 160
Csp6I GTAC 3 cut(s) 80, 622, 720
CspAI ACCGGT 1 cut(s) 25
CviQI GTAC 3 cut(s) 80, 622, 720
DpnI GATC 7 cut(s) 284, 401, 416, 540, 629, 659, 743
DpnII GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
EciI GGCGGA 3 cut(s) 78, 113, 157
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 43, 91, 333
EcoT22I ATGCAT 1 cut(s) 733
Esp3I CGTCTC 1 cut(s) 307
FaiI YATR 4 cut(s) 161, 163, 480, 515
FaqI GGGAC 3 cut(s) 331, 437, 661
FauI CCCGC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 627
Fnu4HI GCNGC 8 cut(s) 151, 166, 169, 210, 223, 461, 564, 569
FokI GGATG 2 cut(s) 95, 188
FseI GGCCGGCC 1 cut(s) 76
Fsp4HI GCNGC 8 cut(s) 151, 166, 169, 210, 223, 461, 564, 569
GlaI GCGC 3 cut(s) 134, 181, 567
GluI GCNGC 8 cut(s) 151, 166, 169, 210, 223, 461, 564, 569
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 2 cut(s) 17, 27
HaeIII GGCC 4 cut(s) 72, 76, 96, 260
HapII CCGG 8 cut(s) 26, 68, 73, 139, 219, 250, 257, 487
HgaI GACGC 1 cut(s) 160
HhaI GCGC 3 cut(s) 135, 182, 568
Hin1I GRCGYC 1 cut(s) 330
Hin6I GCGC 3 cut(s) 133, 180, 566
HinP1I GCGC 3 cut(s) 133, 180, 566
HpaII CCGG 8 cut(s) 26, 68, 73, 139, 219, 250, 257, 487
HphI GGTGA 3 cut(s) 334, 367, 532
Hpy166II GTNNAC 2 cut(s) 474, 720
Hpy188I TCNGA 1 cut(s) 543
Hpy188III TCNNGA 4 cut(s) 34, 280, 403, 505
Hpy8I GTNNAC 2 cut(s) 474, 720
Hpy99I CGWCG 3 cut(s) 332, 437, 499
HpyAV CCTTC 7 cut(s) 126, 130, 193, 271, 286, 549, 682
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 330, 435, 624
HpyCH4V TGCA 6 cut(s) 7, 159, 409, 655, 701, 731
HpyF10VI GCNNNNNNNGC 8 cut(s) 13, 132, 139, 156, 165, 177, 215, 565
HpySE526I ACGT 3 cut(s) 330, 435, 624
Hsp92I GRCGYC 1 cut(s) 330
HspAI GCGC 3 cut(s) 133, 180, 566
KflI GGGWCCC 1 cut(s) 318
KroI GCCGGC 2 cut(s) 72, 218
KroNI GCCGGC 2 cut(s) 74, 220
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 5 cut(s) 137, 152, 155, 447, 580
LweI GCATC 4 cut(s) 234, 396, 642, 688
MaeII ACGT 3 cut(s) 330, 435, 624
MaeIII GTNAC 1 cut(s) 340
MalI GATC 7 cut(s) 284, 401, 416, 540, 629, 659, 743
MboI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
MboII GAAGA 4 cut(s) 166, 220, 376, 586
MflI RGATCY 1 cut(s) 282
MluCI AATT 2 cut(s) 290, 499
Mph1103I ATGCAT 1 cut(s) 733
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 2 cut(s) 72, 218
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 736
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 8 cut(s) 26, 68, 73, 139, 219, 250, 257, 487
MspR9I CCNGG 7 cut(s) 45, 69, 93, 139, 250, 257, 335
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 3 cut(s) 45, 93, 335
MvnI CGCG 2 cut(s) 393, 413
MwoI GCNNNNNNNGC 8 cut(s) 13, 132, 139, 156, 165, 177, 215, 565
NaeI GCCGGC 2 cut(s) 74, 220
NciI CCSGG 4 cut(s) 69, 139, 250, 257
NdeI CATATG 1 cut(s) 161
NdeII GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
NgoMIV GCCGGC 2 cut(s) 72, 218
NlaIV GGNNCC 5 cut(s) 254, 319, 320, 362, 485
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 733
NspV TTCGAA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 1 cut(s) 731
PdiI GCCGGC 2 cut(s) 74, 220
PfoI TCCNGGA 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 8 cut(s) 152, 167, 170, 211, 224, 462, 565, 570
Ppu21I YACGTR 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 43, 91, 333
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 3 cut(s) 43, 91, 333
PspN4I GGNNCC 5 cut(s) 254, 319, 320, 362, 485
PspPI GGNCC 3 cut(s) 70, 75, 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 571
RigI GGCCGGCC 1 cut(s) 76
RsaI GTAC 3 cut(s) 81, 623, 721
RsaNI GTAC 3 cut(s) 80, 622, 720
RseI CAYNNNNRTG 1 cut(s) 736
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 8 cut(s) 151, 166, 169, 210, 223, 461, 564, 569
Sau3AI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
Sau96I GGNCC 3 cut(s) 70, 75, 318
ScrFI CCNGG 7 cut(s) 45, 69, 93, 139, 250, 257, 335
SfaNI GCATC 4 cut(s) 234, 396, 642, 688
SfuI TTCGAA 1 cut(s) 294
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 736
Sse9I AATT 2 cut(s) 290, 499
StyD4I CCNGG 7 cut(s) 43, 67, 91, 137, 248, 255, 333
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 333, 438, 627
TaqI TCGA 5 cut(s) 294, 327, 351, 378, 402
TasI AATT 2 cut(s) 290, 499
TauI GCSGC 3 cut(s) 212, 225, 566
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 5 cut(s) 150, 165, 168, 460, 568
Tsp45I GTSAC 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 290, 499
ZraI GACGTC 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.