Rorug01G0263800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011168
Physical Location & Seq
Forward (+)
37393719 .. 37395196
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0263800.1

Sequence Viewer

Length: 1167 bp
ATGGGTTTTGTAGCATGTGCCCGTAATCATAGCCTCTCATATTCTGAGGGCTACAATATCTCACATTGGGATGAAAAATGCCCCGTGAAAGATGCTGATCCAAAGACCTTCGATTTTGGTATCTATTTATACGCTCTTCAGTCTGATGTGGCCAATTTTTCGAAGCCTCTCTCACAAAGGGTGTTCCAATCTTTCTGGTGGGCGCTACGAAATTTGAGTTCTTTTGGTTCAAACCTAACTAGTAGCATGGATACGTTGGAAATCTTCTTCTCTGTTTTGATATCTATAAGTGGCATGGCGCTATTTCTAGTATATCTCAATGCAAGGGTGCAGGAGTCCCAAGAAAGATCAAATAAGCTTTTGTTGAAAGAGAAGAAACAATTGATGAAACCAGATATCGATTTGTGGTTATCAAAAAATAACCTCTCTAAGGATATGGAAACAGTAGTGACCAAAAAGAAAAAGAAAAATTTGAAGACAGTGATCATGGAAAACATCCACAAACTTGAAGAAAACAGTGATCTTGATGCGCAAAATATACTTTCTGTTCTTCCAATAAAAGAGAAACAAAACATCATGTGCGTTCTTTTCTTAGCTTCACTGAAAAAGGCCCAAGTGTTTCAAACCATAAATGAAAGGGTGTTGAAAGAAATTTGTCATCATCTTGTGCCAGTGACCTACACTGAAGATAGCTACATTGTTCAAAAAGGGAAGCCACTTGGGAAAATGCTACTATTCATTCAAGGCACCGCAGTCACCTGCTCCTATAGTGAAACCAGCAGTGGTTCCTCAAGTAACAAGTGGCTTAAAAAAGAGGATTTTTATGGCGATGAACTCCTAAATTGGGCATTCAAATCTCCCTTGCTCTCTGATATACCCATCTCGACTACCAATGTCATCGCCCAAGAAAAGGTTGAAGCATTTGCTATTAGAGCCAACGACTTGAAGAGTATTTGCTTTAAATTCTGGTGGCTTTTTAGCAGAGAAGTAAATGCCTCTCAATTGGAGCCGTGGCAGCATCTGGCAGCTTCTTCCATACTGGCAACCTGGCGCAGTCGTCAAGCAAGGATCCGTTTGGCAGCTTCTTACGTACCACCGACCAGATGGTTTCATCGTCGAGCAAGGACTAAAAACCCAACTCACTGGAACAGATTTGTCATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

388

Amino Acids

44.73

Weight (kDa)

9.39

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 767
Acc16I TGCGCA 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 746
AciI CCGC 1 cut(s) 750
AclWI GGATC 3 cut(s) 92, 1063, 1076
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 4 cut(s) 211, 469, 651, 962
AcuI CTGAAG 2 cut(s) 122, 705
AfaI GTAC 1 cut(s) 1092
AfiI CCNNNNNNNGG 3 cut(s) 430, 844, 910
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 1046
AluBI AGCT 5 cut(s) 358, 596, 693, 1028, 1082
AluI AGCT 5 cut(s) 358, 596, 693, 1028, 1082
AlwI GGATC 3 cut(s) 92, 1063, 1076
AlwNI CAGNNNCTG 1 cut(s) 1021
AoxI GGCC 2 cut(s) 150, 609
ApeKI GCWGC 3 cut(s) 1015, 1025, 1079
ApoI RAATTY 4 cut(s) 211, 469, 651, 962
AspLEI GCGC 4 cut(s) 205, 301, 532, 1053
AspS9I GGNCC 1 cut(s) 610
AsuHPI GGTGA 1 cut(s) 748
AsuII TTCGAA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 1068
BanI GGYRCC 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 1027, 1037, 1091
BccI CCATC 2 cut(s) 887, 1098
BceAI ACGGC 1 cut(s) 994
BciT130I CCWGG 1 cut(s) 1048
BciVI GTATCC 1 cut(s) 244
BclI TGATCA 1 cut(s) 483
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 308
BfmI CTRYAG 1 cut(s) 766
BfoI RGCGCY 2 cut(s) 206, 302
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 3 cut(s) 1016, 1026, 1080
BlsI GCNGC 3 cut(s) 1017, 1027, 1081
Bme1390I CCNGG 1 cut(s) 1048
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 4 cut(s) 748, 787, 1008, 1070
BmrFI CCNGG 1 cut(s) 1048
BmsI GCATC 3 cut(s) 82, 517, 1027
BpiI GAAGAC 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 775
Bsa29I ATCGAT 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 1090
BsaBI GATNNNNATC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 1010
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 844, 910
Bse1I ACTGG 3 cut(s) 671, 1044, 1148
Bse8I GATNNNNATC 1 cut(s) 96
BseBI CCWGG 1 cut(s) 1048
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 1010
BseGI GGATG 2 cut(s) 76, 495
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 3 cut(s) 430, 844, 910
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 3 cut(s) 671, 1044, 1148
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 3 cut(s) 1027, 1037, 1091
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 2 cut(s) 152, 611
BshNI GGYRCC 1 cut(s) 746
BshVI ATCGAT 1 cut(s) 399
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 430, 844, 910
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 2 cut(s) 152, 611
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 5 cut(s) 97, 347, 483, 520, 1068
BspACI CCGC 1 cut(s) 750
BspANI GGCC 2 cut(s) 152, 611
BspCNI CTCAG 1 cut(s) 37
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 4 cut(s) 748, 787, 1008, 1070
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 3 cut(s) 92, 1063, 1076
BspQI GCTCTTC 1 cut(s) 141
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 746
BsrI ACTGG 3 cut(s) 671, 1044, 1148
BssECI CCNNGG 1 cut(s) 1010
BssMI GATC 5 cut(s) 97, 347, 483, 520, 1068
Bst2UI CCWGG 1 cut(s) 1048
Bst4CI ACNGT 3 cut(s) 445, 481, 518
Bst6I CTCTTC 2 cut(s) 141, 941
BstBAI YACGTR 1 cut(s) 1090
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 45, 429, 592
BstDSI CCRYGG 1 cut(s) 1010
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 76, 495
BstH2I RGCGCY 2 cut(s) 206, 302
BstHHI GCGC 4 cut(s) 205, 301, 532, 1053
BstKTI GATC 5 cut(s) 100, 350, 486, 523, 1071
BstMBI GATC 5 cut(s) 97, 347, 483, 520, 1068
BstMWI GCNNNNNNNGC 2 cut(s) 932, 1015
BstNI CCWGG 1 cut(s) 1048
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 1046
BstSFI CTRYAG 1 cut(s) 766
BstSLI GKGCMC 1 cut(s) 22
BstSNI TACGTA 1 cut(s) 1090
BstV1I GCAGC 3 cut(s) 1027, 1037, 1091
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 1068
BstXI CCANNNNNNTGG 1 cut(s) 1143
BstYI RGATCY 1 cut(s) 1068
Bsu15I ATCGAT 1 cut(s) 399
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 152, 611
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 1010
BtgZI GCGATG 2 cut(s) 843, 883
BtsCI GGATG 2 cut(s) 76, 495
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 7 cut(s) 486, 523, 599, 678, 681, 787, 1141
BveI ACCTGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 1021
CfoI GCGC 4 cut(s) 205, 301, 532, 1053
Cfr13I GGNCC 1 cut(s) 610
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 1091
CviAII CATG 5 cut(s) 15, 247, 295, 487, 577
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 3 cut(s) 45, 429, 592
DpnI GATC 5 cut(s) 99, 349, 485, 522, 1070
DpnII GATC 5 cut(s) 97, 347, 483, 520, 1068
DraI TTTAAA 1 cut(s) 961
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 141, 941
EarI CTCTTC 2 cut(s) 141, 941
Eco105I TACGTA 1 cut(s) 1090
Eco32I GATATC 2 cut(s) 282, 397
Eco57I CTGAAG 2 cut(s) 122, 705
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 1046
EcoRV GATATC 2 cut(s) 282, 397
FaeI CATG 5 cut(s) 18, 250, 298, 490, 580
FaqI GGGAC 1 cut(s) 322
FatI CATG 5 cut(s) 14, 246, 294, 486, 576
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 1016, 1026, 1080
FokI GGATG 2 cut(s) 83, 482
Fsp4HI GCNGC 3 cut(s) 1016, 1026, 1080
FspBI CTAG 2 cut(s) 240, 308
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 4 cut(s) 204, 300, 531, 1052
GluI GCNGC 3 cut(s) 1016, 1026, 1080
HaeII RGCGCY 2 cut(s) 206, 302
HaeIII GGCC 2 cut(s) 152, 611
HhaI GCGC 4 cut(s) 205, 301, 532, 1053
Hin1II CATG 5 cut(s) 18, 250, 298, 490, 580
Hin6I GCGC 4 cut(s) 203, 299, 530, 1051
HinP1I GCGC 4 cut(s) 203, 299, 530, 1051
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 335
HphI GGTGA 1 cut(s) 748
Hpy188I TCNGA 3 cut(s) 46, 145, 871
Hpy188III TCNNGA 2 cut(s) 524, 883
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 3 cut(s) 445, 481, 518
HpyCH4IV ACGT 2 cut(s) 254, 1089
HpyCH4V TGCA 2 cut(s) 323, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 932, 1015
HpyF3I CTNAG 3 cut(s) 45, 429, 592
HpySE526I ACGT 2 cut(s) 254, 1089
Hsp92II CATG 5 cut(s) 18, 250, 298, 490, 580
HspAI GCGC 4 cut(s) 203, 299, 530, 1051
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 97, 347, 483, 520, 1068
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 767, 1006
Lsp1109I GCAGC 3 cut(s) 1027, 1037, 1091
LweI GCATC 3 cut(s) 82, 517, 1027
MaeI CTAG 2 cut(s) 240, 308
MaeII ACGT 2 cut(s) 254, 1089
MaeIII GTNAC 4 cut(s) 448, 673, 754, 794
MalI GATC 5 cut(s) 99, 349, 485, 522, 1070
MboI GATC 5 cut(s) 97, 347, 483, 520, 1068
MfeI CAATTG 2 cut(s) 380, 1001
MflI RGATCY 1 cut(s) 1068
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 9 cut(s) 154, 211, 380, 469, 651, 841, 962, 1001, 1162
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 7 cut(s) 40, 44, 177, 434, 799, 808, 1006
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 2 cut(s) 807, 960
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 1048
MunI CAATTG 2 cut(s) 380, 1001
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 1 cut(s) 1048
MwoI GCNNNNNNNGC 2 cut(s) 932, 1015
NdeII GATC 5 cut(s) 97, 347, 483, 520, 1068
NlaIII CATG 5 cut(s) 18, 250, 298, 490, 580
NlaIV GGNNCC 4 cut(s) 748, 787, 1008, 1070
NmuCI GTSAC 3 cut(s) 448, 673, 754
NsbI TGCGCA 1 cut(s) 531
NspI RCATGY 1 cut(s) 18
NspV TTCGAA 1 cut(s) 161
PaqCI CACCTGC 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 848
PkrI GCNGC 3 cut(s) 1017, 1027, 1081
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Ppu21I YACGTR 1 cut(s) 1090
Psp6I CCWGG 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 1046
PspN4I GGNNCC 4 cut(s) 748, 787, 1008, 1070
PspPI GGNCC 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 1068
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
RseI CAYNNNNRTG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 807, 960
SatI GCNGC 3 cut(s) 1016, 1026, 1080
Sau3AI GATC 5 cut(s) 97, 347, 483, 520, 1068
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 1048
SduI GDGCHC 1 cut(s) 22
SfaNI GCATC 3 cut(s) 82, 517, 1027
SfcI CTRYAG 1 cut(s) 766
SfuI TTCGAA 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
SnaBI TACGTA 1 cut(s) 1090
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 9 cut(s) 154, 211, 380, 469, 651, 841, 962, 1001, 1162
SsiI CCGC 1 cut(s) 750
SspMI CTAG 2 cut(s) 240, 308
StyD4I CCNGG 1 cut(s) 1046
TaaI ACNGT 3 cut(s) 445, 481, 518
TaiI ACGT 2 cut(s) 257, 1092
TaqI TCGA 5 cut(s) 111, 161, 399, 884, 1117
TasI AATT 9 cut(s) 154, 211, 380, 469, 651, 841, 962, 1001, 1162
Tru1I TTAA 2 cut(s) 807, 960
Tru9I TTAA 2 cut(s) 807, 960
TscAI CASTG 7 cut(s) 486, 523, 606, 678, 688, 787, 1148
TseFI GTSAC 3 cut(s) 448, 673, 754
TseI GCWGC 3 cut(s) 1015, 1025, 1079
Tsp45I GTSAC 3 cut(s) 448, 673, 754
TspDTI ATGAA 6 cut(s) 87, 401, 648, 727, 846, 1100
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 7 cut(s) 486, 523, 606, 678, 688, 787, 1148
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 4 cut(s) 211, 469, 651, 962
XceI RCATGY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 1101
XspI CTAG 2 cut(s) 240, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.