AT4G01110

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011168
Physical Location & Seq
Reverse (-)
479963 .. 481160
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01110.1

Sequence Viewer

Length: 786 bp
ATGGCGGGAGAGACTCTACTTAAACCGGTGCTTCAAAAACCACCAGGCTACCGTGAGCTCCACTCGCAACCTCAAACTCCACTCGGTTCATCTTCATCATCATCATCAATGCTTCGTCGCCCACCAAAACATGCCATTCCTGCGGCGTTTTATCCGACGAAGAAGAGACAATGGAGTCGTTGCCGCGTCTTTTGCTGCTGCGTCTGCATCACCGTCGCCATTGTCATTCTCCTCCTTATCCTCACCGTCTCCGTTTTCTTTCTTTATTACAGCCCGAGACTCCCCGTCGTACGTCTCTCCTCTTTCCGCGTCAGCAATTTCAACTTTTCCGGTGGGAAAGCCGGCGACGGTTTATCGCAGTTGACGGCGGAGGCTACAGCGAGGCTTGATTTCAGAAACCCTAACGGGAAGTTACGTTACTATTACGGTAACGTTGACGTGGCGGTGAGTGTAGGAGAAGATGATTTCGAAACGAGTCTCGGGTCAACGAAAGTCAAAGGATTTGTGGAGAAGCCAGGGAATCGGACGGTTGTGATTGTTCCGATAAAAGTGAAGAAGCAACAGGTGGATGATCCGACGGTTAAGAGGCTAAGAGCGGACATGAAGAGTAAAAAGTTGGTGGTGAAAGTGATGGCTAAAACGAAGGTAGGATTGGGTGTGGGAAGGCGTAAGATTGTTACGGTGGGGGTTACTATCAGTTGCGGTGGCGTGAGATTACAAACGCTTGATTCAAAGATGAGTAAATGCACCATCAAAATGCTTAAATGGATTAAATTGCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

261

Amino Acids

28.84

Weight (kDa)

10.25

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 129 - 225 1.2e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AccBSI CCGCTC 1 cut(s) 596
AccII CGCG 2 cut(s) 186, 309
AciI CCGC 8 cut(s) 5, 143, 184, 307, 368, 443, 596, 702
AclI AACGTT 1 cut(s) 432
AclWI GGATC 1 cut(s) 566
AfaI GTAC 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 35, 322, 732
AhdI GACNNNNNGTC 1 cut(s) 284
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 2 cut(s) 43, 514
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 6 cut(s) 5, 160, 253, 271, 299, 482
AlwI GGATC 1 cut(s) 566
Ama87I CYCGRG 2 cut(s) 274, 479
ApeKI GCWGC 2 cut(s) 195, 198
AsiGI ACCGGT 1 cut(s) 25
AsuHPI GGTGA 4 cut(s) 202, 235, 457, 634
AsuII TTCGAA 1 cut(s) 468
AvaI CYCGRG 2 cut(s) 274, 479
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 182, 185
BccI CCATC 2 cut(s) 625, 758
BceAI ACGGC 1 cut(s) 381
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 45, 516
BcoDI GTCTC 6 cut(s) 5, 160, 253, 271, 299, 482
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 4 cut(s) 144, 184, 196, 199
BlsI GCNGC 4 cut(s) 145, 185, 197, 200
Bme1390I CCNGG 2 cut(s) 45, 516
BmeRI GACNNNNNGTC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 274, 479
BmgBI CACGTC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 45, 516
BmsI GCATC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu14I TTCGAA 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 515
BsaWI WCCGGW 2 cut(s) 25, 329
Bse118I RCCGGY 2 cut(s) 25, 341
BseBI CCWGG 2 cut(s) 45, 516
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 574
BseRI GAGGAG 2 cut(s) 221, 289
BseXI GCAGC 2 cut(s) 182, 185
Bsh1236I CGCG 2 cut(s) 186, 309
BshTI ACCGGT 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 2 cut(s) 274, 479
BsiSI CCGG 3 cut(s) 26, 330, 342
BsiWI CGTACG 1 cut(s) 289
BsmAI GTCTC 6 cut(s) 5, 160, 253, 271, 299, 482
BsmBI CGTCTC 2 cut(s) 253, 299
BsoBI CYCGRG 2 cut(s) 274, 479
Bsp119I TTCGAA 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 571
BspACI CCGC 8 cut(s) 5, 143, 184, 307, 368, 443, 596, 702
BspFNI CGCG 2 cut(s) 186, 309
BspPI GGATC 1 cut(s) 566
BspT104I TTCGAA 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 596
BsrFI RCCGGY 2 cut(s) 25, 341
BssAI RCCGGY 2 cut(s) 25, 341
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 45, 516
Bst4CI ACNGT 8 cut(s) 53, 214, 247, 350, 428, 529, 580, 682
Bst6I CTCTTC 2 cut(s) 158, 599
BstBI TTCGAA 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 2 cut(s) 186, 309
BstKTI GATC 1 cut(s) 574
BstMAI GTCTC 6 cut(s) 5, 160, 253, 271, 299, 482
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 64, 140, 192, 204
BstNI CCWGG 2 cut(s) 45, 516
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 43, 514
BstSFI CTRYAG 1 cut(s) 375
BstUI CGCG 2 cut(s) 186, 309
BstV1I GCAGC 2 cut(s) 182, 185
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 343
Cfr10I RCCGGY 2 cut(s) 25, 341
CseI GACGC 3 cut(s) 175, 190, 298
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 2 cut(s) 131, 601
CviJI RGCY 9 cut(s) 48, 58, 273, 341, 374, 385, 514, 589, 635
CviKI_1 RGCY 9 cut(s) 48, 58, 273, 341, 374, 385, 514, 589, 635
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 590
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
DrdI GACNNNNNNGTC 1 cut(s) 174
DriI GACNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 158, 599
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 2 cut(s) 158, 599
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 58
Eco88I CYCGRG 2 cut(s) 274, 479
EcoICRI GAGCTC 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 43, 514
EcoT38I GRGCYC 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 253, 299
FaeI CATG 2 cut(s) 134, 604
FaiI YATR 3 cut(s) 132, 602, 784
FatI CATG 2 cut(s) 130, 600
Fnu4HI GCNGC 4 cut(s) 144, 184, 196, 199
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 144, 184, 196, 199
GluI GCNGC 4 cut(s) 144, 184, 196, 199
HapII CCGG 3 cut(s) 26, 330, 342
HgaI GACGC 3 cut(s) 175, 190, 298
Hin1II CATG 2 cut(s) 134, 604
HincII GTYRAC 3 cut(s) 363, 436, 486
HindII GTYRAC 3 cut(s) 363, 436, 486
HinfI GANTC 6 cut(s) 13, 175, 279, 475, 520, 728
HpaII CCGG 3 cut(s) 26, 330, 342
HphI GGTGA 4 cut(s) 202, 235, 457, 634
Hpy166II GTNNAC 3 cut(s) 363, 436, 486
Hpy188I TCNGA 5 cut(s) 156, 395, 525, 543, 576
Hpy8I GTNNAC 3 cut(s) 363, 436, 486
Hpy99I CGWCG 6 cut(s) 120, 160, 218, 290, 350, 580
HpyAV CCTTC 2 cut(s) 637, 657
HpyCH4III ACNGT 8 cut(s) 53, 214, 247, 350, 428, 529, 580, 682
HpyCH4IV ACGT 4 cut(s) 292, 415, 432, 438
HpyCH4V TGCA 3 cut(s) 207, 747, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 140, 192, 204
HpyF3I CTNAG 1 cut(s) 590
HpySE526I ACGT 4 cut(s) 292, 415, 432, 438
Hsp92II CATG 2 cut(s) 134, 604
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 9 cut(s) 30, 39, 57, 153, 343, 355, 501, 528, 548
Lsp1109I GCAGC 2 cut(s) 182, 185
LweI GCATC 1 cut(s) 216
MaeII ACGT 4 cut(s) 292, 415, 432, 438
MaeIII GTNAC 5 cut(s) 411, 416, 428, 676, 688
MalI GATC 1 cut(s) 573
MbiI CCGCTC 1 cut(s) 596
MboI GATC 1 cut(s) 571
MboII GAAGA 6 cut(s) 84, 172, 175, 470, 565, 616
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 316, 773
MlyI GAGTC 4 cut(s) 7, 184, 273, 484
MmeI TCCRAC 2 cut(s) 179, 599
MnlI CCTC 7 cut(s) 81, 242, 251, 310, 364, 375, 579
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 4 cut(s) 21, 582, 762, 771
MslI CAYNNNNRTG 1 cut(s) 755
MspI CCGG 3 cut(s) 26, 330, 342
MspR9I CCNGG 2 cut(s) 45, 516
MvaI CCWGG 2 cut(s) 45, 516
MvnI CGCG 2 cut(s) 186, 309
MwoI GCNNNNNNNGC 4 cut(s) 64, 140, 192, 204
NaeI GCCGGC 1 cut(s) 343
NdeII GATC 1 cut(s) 571
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 134, 604
NspI RCATGY 1 cut(s) 134
NspV TTCGAA 1 cut(s) 468
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 520, 728
Pfl23II CGTACG 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 4 cut(s) 145, 185, 197, 200
PleI GAGTC 4 cut(s) 7, 183, 273, 483
PpsI GAGTC 4 cut(s) 7, 183, 273, 483
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 43, 514
PspGI CCWGG 2 cut(s) 43, 514
PspLI CGTACG 1 cut(s) 289
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 4 cut(s) 21, 582, 762, 771
SatI GCNGC 4 cut(s) 144, 184, 196, 199
Sau3AI GATC 1 cut(s) 571
SchI GAGTC 4 cut(s) 7, 184, 273, 484
ScrFI CCNGG 2 cut(s) 45, 516
SduI GDGCHC 1 cut(s) 60
SetI ASST 8 cut(s) 60, 73, 295, 418, 435, 441, 567, 648
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 375
SfuI TTCGAA 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 2 cut(s) 316, 773
SsiI CCGC 8 cut(s) 5, 143, 184, 307, 368, 443, 596, 702
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 43, 514
TaaI ACNGT 8 cut(s) 53, 214, 247, 350, 428, 529, 580, 682
TaiI ACGT 4 cut(s) 295, 418, 435, 441
TaqI TCGA 1 cut(s) 468
TasI AATT 2 cut(s) 316, 773
TauI GCSGC 2 cut(s) 146, 186
TfiI GAWTC 2 cut(s) 520, 728
Tru1I TTAA 4 cut(s) 21, 582, 762, 771
Tru9I TTAA 4 cut(s) 21, 582, 762, 771
TseI GCWGC 2 cut(s) 195, 198
TspDTI ATGAA 3 cut(s) 78, 84, 617
TspGWI ACGGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.