Rroxscaffold_4G00297730

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011168
Physical Location & Seq
Reverse (-)
17604604 .. 17606659
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297730.1

Sequence Viewer

Length: 762 bp
ATGGCCCAGCCACCACCAGTAAAACCGGTGCTGCAGAAGCCGCCGGGGTACAGAGACCCGAACCAACCTCCTAGACCGGTTCCAGGGCAGGTTCCCAGAAAACCTGTCCCTCTCCCTCCCTCATTTCATCCACAGCCGAAGTCCCGGCGCAGCAGCTGCTGCCGTGTCTTTTGCTGGGTGTGTTGCATTTTGATCCTTGTGATTATTGTCGTCGTCGCGCTGGCAGCCGGAATATTCTTCCTCTTATACGATCCGAGGCTCCCGTTGGTTTACTTGCGGTCGTTTCAGATACCGCTCTTCAACACCACGGTGAAACCCGGCGGGACTTACCTCGACGCATGGACAGTTCCGGGGATGGAGGTGAAAAACCCCAACGGTAAGTTGGACATATTCTACTCAGGGGTGCAGGCCTACGTCAGCGTCGGGGACCCGAACGACGTAGGGTTGGTGTTGGGGATGAAAGACCTGACAGGGTTTACGCAGAAGTCGAGTAACACGACCAGTGTTAAGTTCGATTATGTGGTGAAGAACCGGCAGCTGAACGATGAGGTGGCGAAGAAGCTGAAGAGTCAGTATGTGAGCAAAGCGATGAAGGTTGGGGTGGAGGTGAAGGCCAGGTTGGGTTATGTTGTGAAGGGGTGGAGGCTAGGGACGATGAATATTGATGTGTTGTGTGGGGGTGTCACCATGAAGGAGATTCATGCTGGTAGTACAATGCCCAAGTGTACAATCTCTGCCTACAAATGGATCCAAATCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

253

Amino Acids

28.01

Weight (kDa)

9.74

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 1 cut(s) 218
AciI CCGC 4 cut(s) 41, 277, 293, 321
AclWI GGATC 4 cut(s) 187, 245, 742, 755
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 3 cut(s) 50, 712, 727
AfiI CCNNNNNNNGG 2 cut(s) 83, 744
AgeI ACCGGT 2 cut(s) 25, 76
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 82, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 3 cut(s) 156, 538, 562
AluI AGCT 3 cut(s) 156, 538, 562
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 4 cut(s) 187, 245, 742, 755
AlwNI CAGNNNCTG 2 cut(s) 156, 159
AoxI GGCC 3 cut(s) 3, 408, 612
ApeKI GCWGC 7 cut(s) 31, 150, 153, 156, 159, 224, 535
AsiGI ACCGGT 2 cut(s) 25, 76
AspLEI GCGC 2 cut(s) 150, 220
AspS9I GGNCC 2 cut(s) 4, 427
AsuC2I CCSGG 4 cut(s) 45, 145, 318, 351
AsuHPI GGTGA 5 cut(s) 322, 373, 535, 619, 676
AvaII GGWCC 1 cut(s) 427
BamHI GGATCC 1 cut(s) 747
BbvI GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 2 cut(s) 84, 616
BcnI CCSGG 4 cut(s) 45, 145, 318, 351
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 72, 647
BfmI CTRYAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
BlsI GCNGC 8 cut(s) 33, 42, 152, 155, 158, 161, 226, 537
Bme1390I CCNGG 6 cut(s) 45, 84, 145, 318, 351, 616
Bme18I GGWCC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 4, 427
BmiI GGNNCC 6 cut(s) 81, 93, 260, 428, 429, 749
BmrFI CCNGG 6 cut(s) 45, 84, 145, 318, 351, 616
BpuMI CCSGG 4 cut(s) 45, 145, 318, 351
BsaBI GATNNNNATC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 44, 83, 254, 306, 350
BsaWI WCCGGW 2 cut(s) 25, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 744
Bse118I RCCGGY 3 cut(s) 25, 76, 531
Bse1I ACTGG 2 cut(s) 17, 501
Bse8I GATNNNNATC 1 cut(s) 752
BseBI CCWGG 2 cut(s) 84, 616
BseDI CCNNGG 5 cut(s) 44, 83, 254, 306, 350
BseGI GGATG 3 cut(s) 127, 360, 462
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 2 cut(s) 83, 744
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 17, 501
BseXI GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BseYI CCCAGC 2 cut(s) 6, 174
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 3 cut(s) 5, 410, 614
BshTI ACCGGT 2 cut(s) 25, 76
BsiEI CGRYCG 1 cut(s) 281
BsiSI CCGG 8 cut(s) 26, 44, 77, 145, 228, 318, 350, 532
BslFI GGGAC 5 cut(s) 92, 127, 337, 440, 664
BslI CCNNNNNNNGG 2 cut(s) 83, 744
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 5 cut(s) 92, 127, 337, 440, 664
BsnI GGCC 3 cut(s) 5, 410, 614
Bso31I GGTCTC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 725
Bsp143I GATC 3 cut(s) 192, 250, 747
BspACI CCGC 4 cut(s) 41, 277, 293, 321
BspANI GGCC 3 cut(s) 5, 410, 614
BspCNI CTCAG 1 cut(s) 410
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 6 cut(s) 81, 93, 260, 428, 429, 749
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 4 cut(s) 187, 245, 742, 755
BspQI GCTCTTC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 25, 76, 531
BsrGI TGTACA 1 cut(s) 725
BsrI ACTGG 2 cut(s) 17, 501
BssAI RCCGGY 3 cut(s) 25, 76, 531
BssECI CCNNGG 5 cut(s) 44, 83, 254, 306, 350
BssMI GATC 3 cut(s) 192, 250, 747
Bst2UI CCWGG 2 cut(s) 84, 616
Bst4CI ACNGT 3 cut(s) 310, 346, 377
Bst6I CTCTTC 2 cut(s) 302, 560
BstAPI GCANNNNNTGC 2 cut(s) 156, 159
BstAUI TGTACA 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 222, 408
BstDEI CTNAG 1 cut(s) 397
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 127, 360, 462
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 150, 220
BstKTI GATC 3 cut(s) 195, 253, 750
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 192, 250, 747
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
BstNI CCWGG 2 cut(s) 84, 616
BstSCI CCNGG 6 cut(s) 43, 82, 143, 316, 349, 614
BstSFI CTRYAG 1 cut(s) 32
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 3 cut(s) 5, 410, 614
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 602
BtsCI GGATG 3 cut(s) 127, 360, 462
BtsIMutI CAGTG 2 cut(s) 508, 757
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 222, 408
CaiI CAGNNNCTG 2 cut(s) 156, 159
CfoI GCGC 2 cut(s) 150, 220
Cfr10I RCCGGY 3 cut(s) 25, 76, 531
Cfr13I GGNCC 2 cut(s) 4, 427
CseI GACGC 2 cut(s) 344, 409
Csp6I GTAC 3 cut(s) 49, 711, 726
CspAI ACCGGT 2 cut(s) 25, 76
CviAII CATG 3 cut(s) 339, 688, 701
CviQI GTAC 3 cut(s) 49, 711, 726
DdeI CTNAG 1 cut(s) 397
DpnI GATC 3 cut(s) 194, 252, 749
DpnII GATC 3 cut(s) 192, 250, 747
Eam1104I CTCTTC 2 cut(s) 302, 560
EarI CTCTTC 2 cut(s) 302, 560
Eco147I AGGCCT 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 82, 614
FaeI CATG 3 cut(s) 342, 691, 704
FaiI YATR 8 cut(s) 247, 340, 389, 519, 576, 627, 689, 702
FaqI GGGAC 5 cut(s) 92, 127, 337, 440, 664
FatI CATG 3 cut(s) 338, 687, 700
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
FokI GGATG 3 cut(s) 114, 367, 469
Fsp4HI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
FspBI CTAG 2 cut(s) 72, 647
GlaI GCGC 2 cut(s) 149, 219
GluI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
GsaI CCCAGC 2 cut(s) 10, 178
HaeIII GGCC 3 cut(s) 5, 410, 614
HapII CCGG 8 cut(s) 26, 44, 77, 145, 228, 318, 350, 532
HgaI GACGC 2 cut(s) 344, 409
HhaI GCGC 2 cut(s) 150, 220
Hin1II CATG 3 cut(s) 342, 691, 704
Hin6I GCGC 2 cut(s) 148, 218
HinP1I GCGC 2 cut(s) 148, 218
HinfI GANTC 2 cut(s) 568, 697
HpaII CCGG 8 cut(s) 26, 44, 77, 145, 228, 318, 350, 532
HphI GGTGA 5 cut(s) 322, 373, 535, 619, 676
Hpy166II GTNNAC 3 cut(s) 271, 477, 726
Hpy188I TCNGA 2 cut(s) 255, 288
Hpy8I GTNNAC 3 cut(s) 271, 477, 726
Hpy99I CGWCG 5 cut(s) 215, 218, 338, 425, 440
HpyAV CCTTC 4 cut(s) 586, 604, 628, 685
HpyCH4III ACNGT 3 cut(s) 310, 346, 377
HpyCH4IV ACGT 2 cut(s) 414, 438
HpyCH4V TGCA 3 cut(s) 34, 186, 406
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 2 cut(s) 414, 438
Hsp92II CATG 3 cut(s) 342, 691, 704
HspAI GCGC 2 cut(s) 148, 218
KflI GGGWCCC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 192, 250, 747
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
MaeI CTAG 2 cut(s) 72, 647
MaeII ACGT 2 cut(s) 414, 438
MaeIII GTNAC 2 cut(s) 491, 682
MalI GATC 3 cut(s) 194, 252, 749
MbiI CCGCTC 1 cut(s) 295
MboI GATC 3 cut(s) 192, 250, 747
MboII GAAGA 5 cut(s) 229, 289, 538, 568, 577
MflI RGATCY 1 cut(s) 747
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 1 cut(s) 363
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 156, 538
MspI CCGG 8 cut(s) 26, 44, 77, 145, 228, 318, 350, 532
MspR9I CCNGG 6 cut(s) 45, 84, 145, 318, 351, 616
MvaI CCWGG 2 cut(s) 84, 616
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
NciI CCSGG 4 cut(s) 45, 145, 318, 351
NdeII GATC 3 cut(s) 192, 250, 747
NlaIII CATG 3 cut(s) 342, 691, 704
NlaIV GGNNCC 6 cut(s) 81, 93, 260, 428, 429, 749
NmuCI GTSAC 1 cut(s) 682
OliI CACNNNNGTG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 494
PfeI GAWTC 1 cut(s) 697
PinAI ACCGGT 2 cut(s) 25, 76
PkrI GCNGC 8 cut(s) 33, 42, 152, 155, 158, 161, 226, 537
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 82, 614
PspFI CCCAGC 2 cut(s) 6, 174
PspGI CCWGG 2 cut(s) 82, 614
PspN4I GGNNCC 6 cut(s) 81, 93, 260, 428, 429, 749
PspPI GGNCC 2 cut(s) 4, 427
PspPPI RGGWCCY 1 cut(s) 427
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 156, 159
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 2 cut(s) 156, 538
RsaI GTAC 3 cut(s) 50, 712, 727
RsaNI GTAC 3 cut(s) 49, 711, 726
RseI CAYNNNNRTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
Sau3AI GATC 3 cut(s) 192, 250, 747
Sau96I GGNCC 2 cut(s) 4, 427
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 6 cut(s) 45, 84, 145, 318, 351, 616
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 308
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 4 cut(s) 41, 277, 293, 321
SspI AATATT 2 cut(s) 234, 661
SspMI CTAG 2 cut(s) 72, 647
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 6 cut(s) 43, 82, 143, 316, 349, 614
TaaI ACNGT 3 cut(s) 310, 346, 377
TaiI ACGT 2 cut(s) 417, 441
TaqI TCGA 3 cut(s) 333, 488, 513
TatI WGTACW 2 cut(s) 710, 725
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 7 cut(s) 31, 150, 153, 156, 159, 224, 535
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 6 cut(s) 116, 473, 605, 671, 689, 704
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 2 cut(s) 72, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.