Rorug01G0263900

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011168
Physical Location & Seq
Reverse (-)
37465610 .. 37466630
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0263900.1

Sequence Viewer

Length: 933 bp
ATGGAAGTTATGCAGAACACTCTTACCTCCACATCACATGGTGATCCATACAAGGACCTCTGGAAGACGTTATGGCAAGCCAAAGTACCTGGCAAGGTGAGTATTTGTGTGTGGCGTGCTTGTAATAATTTGCTTCCCACTCGAGAAAGACTGCTTACTAAAGGGTATGATGGAGATCCCAACTGCCTCCTGTGTAACCATCGCATAGAGGATGTAGTTCATTTGTTCTGGAAATGCCAGGTTGCGTCCACCATACTCTCGAATCCTCCTTTTAATCTACAGGATACTATCTTACCATCCCTTAACTTCAAGGAATGGATGTTGGAAAGGGCTGTCACTCTGAGTTCGGACAGCTTTGCACGTTTAATGATGATGATTTGGGCTATGTGGAAAAACAGAAACAACATGTTGTGGTATGGTATACAACAAACAGCCCAAGATATGCTGTTAAGCAGCTTCTCCTGGCTTGATGAGTTTCAGAAGGCTCGAGGAGGTGTGAAAAAACCTAAGGGAGGTGTTGGAGGAGTCTTACGTGATGCCTCAGGAAGATTTGTAGCAGCCTTTGCTAGTCCAGTTGAACATGCTGCGTCTCCGAAGCAATGTGAGCTCATGGCCATTCGGGCTGGTCTTGATTTACTGGTCTCCCTCCAAGTGCAACAGGTGGTGGTGGAAAGTGATAGCACAATGGCCATTGCCGAGGCTCTATGTTCTGATTACACACTATTAGCTAATGGAGGATTAATTGATGACATACGATGTGCCATGCAGAAAATCCCAAGCATCCGTCTTGAGTATCAGCCACGATCCTCCAATATGGTGGCACATAGGCTTGCTGGCATTGGGTTTGAAACTGGTAATAGTTGTGTATGGATAGGTCTAACACTTGCTTGTATTCGTGATGTTCTCAATCACGATTATCAGTACCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

310

Amino Acids

34.82

Weight (kDa)

7.55

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 14 - 84 8.6e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 166 - 278 7.7e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 421
AclWI GGATC 3 cut(s) 38, 170, 798
AcoI YGGCCR 2 cut(s) 612, 687
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 2 cut(s) 87, 923
AfiI CCNNNNNNNGG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 3 cut(s) 310, 578, 848
AjnI CCWGG 3 cut(s) 88, 237, 461
AluBI AGCT 4 cut(s) 354, 456, 607, 728
AluI AGCT 4 cut(s) 354, 456, 607, 728
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 594, 646
AlwI GGATC 3 cut(s) 38, 170, 798
Ama87I CYCGRG 2 cut(s) 141, 486
AoxI GGCC 2 cut(s) 612, 687
ApeKI GCWGC 3 cut(s) 453, 557, 584
AseI ATTAAT 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 53, 109
AvaI CYCGRG 2 cut(s) 141, 486
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 2 cut(s) 507, 541
BalI TGGCCA 2 cut(s) 614, 689
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 465, 569, 571
BccI CCATC 3 cut(s) 164, 207, 304
BciT130I CCWGG 3 cut(s) 90, 239, 463
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 594, 646
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 278
BfuI GTATCC 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 620
BisI GCNGC 3 cut(s) 454, 558, 585
BlsI GCNGC 3 cut(s) 455, 559, 586
Bme1390I CCNGG 3 cut(s) 90, 239, 463
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 2 cut(s) 141, 486
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 90, 239, 463
BmsI GCATC 2 cut(s) 526, 789
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 809
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 696
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 572, 642, 856
Bse21I CCTNAGG 2 cut(s) 507, 541
Bse3DI GCAATG 2 cut(s) 605, 690
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 3 cut(s) 90, 239, 463
BseDI CCNNGG 1 cut(s) 696
BseGI GGATG 4 cut(s) 217, 296, 324, 780
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 2 cut(s) 605, 690
BseMII CTCAG 2 cut(s) 332, 555
BseNI ACTGG 3 cut(s) 572, 642, 856
BseRI GAGGAG 2 cut(s) 504, 537
BseXI GCAGC 3 cut(s) 465, 569, 571
BshFI GGCC 2 cut(s) 614, 689
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 2 cut(s) 141, 486
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 2 cut(s) 594, 646
BsmBI CGTCTC 1 cut(s) 594
BsnI GGCC 2 cut(s) 614, 689
Bso31I GGTCTC 1 cut(s) 646
BsoBI CYCGRG 2 cut(s) 141, 486
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 3 cut(s) 43, 175, 803
BspANI GGCC 2 cut(s) 614, 689
BspCNI CTCAG 2 cut(s) 333, 554
BspPI GGATC 3 cut(s) 38, 170, 798
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 2 cut(s) 605, 690
BsrI ACTGG 3 cut(s) 572, 642, 856
BssECI CCNNGG 1 cut(s) 696
BssMI GATC 3 cut(s) 43, 175, 803
BssNAI GTATAC 1 cut(s) 422
Bst1107I GTATAC 1 cut(s) 422
Bst2UI CCWGG 3 cut(s) 90, 239, 463
BstAPI GCANNNNNTGC 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 4 cut(s) 78, 117, 831, 835
BstDEI CTNAG 3 cut(s) 341, 507, 541
BstENI CCTNNNNNAGG 1 cut(s) 510
BstF5I GGATG 4 cut(s) 217, 296, 324, 780
BstKTI GATC 3 cut(s) 46, 178, 806
BstMAI GTCTC 2 cut(s) 594, 646
BstMBI GATC 3 cut(s) 43, 175, 803
BstMWI GCNNNNNNNGC 3 cut(s) 563, 604, 620
BstNI CCWGG 3 cut(s) 90, 239, 463
BstNSI RCATGY 2 cut(s) 409, 584
BstSCI CCNGG 3 cut(s) 88, 237, 461
BstSFI CTRYAG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 465, 569, 571
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 1 cut(s) 175
BstZ17I GTATAC 1 cut(s) 422
Bsu36I CCTNAGG 2 cut(s) 507, 541
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 614, 689
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 4 cut(s) 217, 296, 324, 780
Cac8I GCNNGC 4 cut(s) 78, 117, 831, 835
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 2 cut(s) 234, 576
Csp6I GTAC 2 cut(s) 86, 922
CviAII CATG 5 cut(s) 38, 406, 581, 610, 763
CviQI GTAC 2 cut(s) 86, 922
DdeI CTNAG 3 cut(s) 341, 507, 541
DpnI GATC 3 cut(s) 45, 177, 805
DpnII GATC 3 cut(s) 43, 175, 803
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 612, 687
Ecl136II GAGCTC 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 607
Eco81I CCTNAGG 2 cut(s) 507, 541
Eco88I CYCGRG 2 cut(s) 141, 486
EcoICRI GAGCTC 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 3 cut(s) 88, 237, 461
EcoT38I GRGCYC 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 5 cut(s) 41, 409, 584, 613, 766
FatI CATG 5 cut(s) 37, 405, 580, 609, 762
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 454, 558, 585
FokI GGATG 4 cut(s) 224, 283, 331, 767
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 3 cut(s) 454, 558, 585
FspBI CTAG 1 cut(s) 567
GluI GCNGC 3 cut(s) 454, 558, 585
HaeIII GGCC 2 cut(s) 614, 689
HgaI GACGC 2 cut(s) 234, 576
Hin1II CATG 5 cut(s) 41, 409, 584, 613, 766
HinfI GANTC 2 cut(s) 262, 525
HphI GGTGA 2 cut(s) 53, 109
Hpy166II GTNNAC 2 cut(s) 249, 422
Hpy188I TCNGA 5 cut(s) 342, 349, 480, 594, 712
Hpy188III TCNNGA 9 cut(s) 61, 143, 229, 259, 543, 629, 788, 896, 911
Hpy8I GTNNAC 2 cut(s) 249, 422
HpyAV CCTTC 1 cut(s) 475
HpyCH4IV ACGT 3 cut(s) 68, 361, 532
HpyCH4V TGCA 4 cut(s) 13, 359, 655, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 563, 604, 620
HpyF3I CTNAG 3 cut(s) 341, 507, 541
HpySE526I ACGT 3 cut(s) 68, 361, 532
Hsp92II CATG 5 cut(s) 41, 409, 584, 613, 766
Kzo9I GATC 3 cut(s) 43, 175, 803
Lsp1109I GCAGC 3 cut(s) 465, 569, 571
LweI GCATC 2 cut(s) 526, 789
MaeI CTAG 1 cut(s) 567
MaeII ACGT 3 cut(s) 68, 361, 532
MaeIII GTNAC 2 cut(s) 194, 334
MalI GATC 3 cut(s) 45, 177, 805
MboI GATC 3 cut(s) 43, 175, 803
MboII GAAGA 2 cut(s) 76, 558
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 2 cut(s) 614, 689
MluCI AATT 2 cut(s) 127, 741
MluNI TGGCCA 2 cut(s) 614, 689
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 2 cut(s) 303, 499
Mox20I TGGCCA 2 cut(s) 614, 689
MscI TGGCCA 2 cut(s) 614, 689
MseI TTAA 5 cut(s) 273, 303, 365, 449, 740
Msp20I TGGCCA 2 cut(s) 614, 689
MspR9I CCNGG 3 cut(s) 90, 239, 463
MvaI CCWGG 3 cut(s) 90, 239, 463
MwoI GCNNNNNNNGC 3 cut(s) 563, 604, 620
NdeII GATC 3 cut(s) 43, 175, 803
NlaIII CATG 5 cut(s) 41, 409, 584, 613, 766
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 2 cut(s) 409, 584
PaeR7I CTCGAG 2 cut(s) 141, 486
PciI ACATGT 1 cut(s) 405
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 455, 559, 586
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 55
PscI ACATGT 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 3 cut(s) 88, 237, 461
PspGI CCWGG 3 cut(s) 88, 237, 461
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 486
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 87, 923
RsaNI GTAC 2 cut(s) 86, 922
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 5 cut(s) 273, 303, 365, 449, 740
SatI GCNGC 3 cut(s) 454, 558, 585
Sau3AI GATC 3 cut(s) 43, 175, 803
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 3 cut(s) 90, 239, 463
SduI GDGCHC 1 cut(s) 609
SfaNI GCATC 2 cut(s) 526, 789
SfcI CTRYAG 1 cut(s) 278
Sfr274I CTCGAG 2 cut(s) 141, 486
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 2 cut(s) 141, 486
SmlI CTYRAG 3 cut(s) 141, 486, 788
SmoI CTYRAG 3 cut(s) 141, 486, 788
Sse9I AATT 2 cut(s) 127, 741
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 88, 237, 461
TaiI ACGT 3 cut(s) 71, 364, 535
TaqI TCGA 3 cut(s) 142, 260, 487
TasI AATT 2 cut(s) 127, 741
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 5 cut(s) 273, 303, 365, 449, 740
Tru9I TTAA 5 cut(s) 273, 303, 365, 449, 740
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 453, 557, 584
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 773
VpaK11BI GGWCC 1 cut(s) 55
VspI ATTAAT 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 510
XceI RCATGY 2 cut(s) 409, 584
XhoI CTCGAG 2 cut(s) 141, 486
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.