MD07G1144100.v1.1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011168
Physical Location & Seq
Forward (+)
20996769 .. 20998574
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1144100.v1.1.491

Sequence Viewer

Length: 756 bp
ATGGCGCAACAACCGCCAATAAGACCGGTGGTGCACAAACCGCCGGGATACCGAGACCCATATCAACCGGGCCGACCCGTACCCGGACAACCACCCCGGAAACCCAATGTCCCCCCTTCCTTCCGCCCAAAGCGCAGCCGGGGGAGTAGATGCTGCCGCATATGCTGCTGCGTCTTCTGCACCTTCCTCCTCATCGTCATCATCGTCGTCGCCCTCGCCGGCGGTATCTTCTACCTCTACTTCGACCCCCGCCTCCCGGCCTTCTACCTCCTCTCCTTCCAGATCCCCAAATTCGACCCCGTCTCCAAGACCGACGGGACCCACCTGGACGTCCAGGCTGTTACCAGCGTCGAGGTGAGGAACCCCAACCCGAAACTCGACATCTTCTACGGCGAGGGGATCGAGATGCACGCGATCCTTGGGGACGAGAACGACGTCGGGATGGGGCTGGGGTCGAAGCAGCTTAGAAGGTTCACGCAGATGCACCGGAACACGACGAATTTCAAGATGGATATGAGGGTGAGGAATAAAGTGGTGGATCAGACGGTCGGGCGGAGGCTGGCGGCGCAGCTGAAGAGTAAGGAGATAAAAGTGGCGGTGGAGGGAAAGACGAGGGTTGGGTACGTGATCAAAGGGTGGAGGATTGGGACGGTGAAGATCAATGTACTGTGCGGCGGCGTGAAGTTGAAGGTGGTTGATGCAGGGGAGATGCCTAAGTGCACCATCAATGCATTCAAATGGATCAACATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

252

Amino Acids

28.23

Weight (kDa)

10.03

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 117 - 215 2.7e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 333, 438
AccII CGCG 1 cut(s) 413
AclWI GGATC 5 cut(s) 277, 407, 409, 546, 749
AcsI RAATTY 2 cut(s) 290, 499
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 2 cut(s) 330, 435
AfaI GTAC 3 cut(s) 81, 623, 666
AfiI CCNNNNNNNGG 2 cut(s) 83, 256
AgeI ACCGGT 1 cut(s) 25
AgsI TTSAA 3 cut(s) 505, 688, 736
AjnI CCWGG 2 cut(s) 324, 333
AluBI AGCT 2 cut(s) 463, 571
AluI AGCT 2 cut(s) 463, 571
Alw21I GWGCWC 2 cut(s) 36, 722
Alw26I GTCTC 2 cut(s) 48, 307
Alw44I GTGCAC 2 cut(s) 32, 718
AlwI GGATC 5 cut(s) 277, 407, 409, 546, 749
AoxI GGCC 2 cut(s) 70, 258
ApaLI GTGCAC 2 cut(s) 32, 718
ApeKI GCWGC 6 cut(s) 135, 153, 165, 168, 460, 568
ApoI RAATTY 2 cut(s) 290, 499
AsiGI ACCGGT 1 cut(s) 25
AspLEI GCGC 3 cut(s) 7, 135, 568
AspS9I GGNCC 2 cut(s) 70, 318
AsuC2I CCSGG 6 cut(s) 45, 69, 84, 97, 140, 257
AsuHPI GGTGA 3 cut(s) 367, 532, 664
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 2 cut(s) 36, 722
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 36, 722
BbvI GCAGC 6 cut(s) 140, 147, 152, 155, 472, 580
BccI CCATC 3 cut(s) 436, 502, 731
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 326, 335
BciVI GTATCC 1 cut(s) 41
BclI TGATCA 1 cut(s) 627
BcnI CCSGG 6 cut(s) 45, 69, 84, 97, 140, 257
BcoDI GTCTC 2 cut(s) 48, 307
BfuI GTATCC 1 cut(s) 41
Bme1390I CCNGG 8 cut(s) 45, 69, 84, 97, 140, 257, 326, 335
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 70, 318
BmiI GGNNCC 3 cut(s) 319, 320, 362
BmrFI CCNGG 8 cut(s) 45, 69, 84, 97, 140, 257, 326, 335
BmsI GCATC 5 cut(s) 140, 396, 471, 688, 699
BpiI GAAGAC 1 cut(s) 166
BpuMI CCSGG 6 cut(s) 45, 69, 84, 97, 140, 257
BsaAI YACGTR 1 cut(s) 625
BsaHI GRCGYC 2 cut(s) 330, 435
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 95, 139, 418
BsaWI WCCGGW 2 cut(s) 25, 486
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 256
Bse118I RCCGGY 2 cut(s) 25, 218
BseBI CCWGG 2 cut(s) 326, 335
BseDI CCNNGG 3 cut(s) 95, 139, 418
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 2 cut(s) 83, 256
BseRI GAGGAG 2 cut(s) 179, 260
BseSI GKGCMC 2 cut(s) 36, 722
BseXI GCAGC 6 cut(s) 140, 147, 152, 155, 472, 580
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 549
BshFI GGCC 2 cut(s) 72, 260
BshTI ACCGGT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 549
BsiHKAI GWGCWC 2 cut(s) 36, 722
BsiSI CCGG 9 cut(s) 26, 44, 68, 84, 97, 139, 219, 257, 487
BslFI GGGAC 4 cut(s) 95, 331, 437, 661
BslI CCNNNNNNNGG 2 cut(s) 83, 256
BsmAI GTCTC 2 cut(s) 48, 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 4 cut(s) 95, 331, 437, 661
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 2 cut(s) 72, 260
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 36, 722
Bsp143I GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BspANI GGCC 2 cut(s) 72, 260
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 3 cut(s) 319, 320, 362
BspPI GGATC 5 cut(s) 277, 407, 409, 546, 749
BspTNI GGTCTC 1 cut(s) 48
BsrFI RCCGGY 2 cut(s) 25, 218
BssAI RCCGGY 2 cut(s) 25, 218
BssECI CCNNGG 3 cut(s) 95, 139, 418
BssMI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BssNI GRCGYC 2 cut(s) 330, 435
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 326, 335
Bst4CI ACNGT 3 cut(s) 547, 652, 669
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 2 cut(s) 330, 435
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 220, 411, 561
BstDEI CTNAG 2 cut(s) 464, 714
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 3 cut(s) 7, 135, 568
BstKTI GATC 7 cut(s) 285, 402, 417, 541, 630, 660, 744
BstMAI GTCTC 2 cut(s) 48, 307
BstMBI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
BstMCI CGRYCG 1 cut(s) 549
BstMWI GCNNNNNNNGC 7 cut(s) 13, 40, 132, 162, 165, 177, 565
BstNI CCWGG 2 cut(s) 326, 335
BstSCI CCNGG 8 cut(s) 43, 67, 82, 95, 138, 255, 324, 333
BstSLI GKGCMC 2 cut(s) 36, 722
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 6 cut(s) 140, 147, 152, 155, 472, 580
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 2 cut(s) 72, 260
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 220, 411, 561
CfoI GCGC 3 cut(s) 7, 135, 568
Cfr10I RCCGGY 2 cut(s) 25, 218
Cfr13I GGNCC 2 cut(s) 70, 318
CseI GACGC 2 cut(s) 160, 337
Csp6I GTAC 3 cut(s) 80, 622, 665
CspAI ACCGGT 1 cut(s) 25
CviJI RGCY 8 cut(s) 72, 138, 260, 338, 448, 463, 559, 571
CviKI_1 RGCY 8 cut(s) 72, 138, 260, 338, 448, 463, 559, 571
CviQI GTAC 3 cut(s) 80, 622, 665
DdeI CTNAG 2 cut(s) 464, 714
DpnI GATC 7 cut(s) 284, 401, 416, 540, 629, 659, 743
DpnII GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
EciI GGCGGA 2 cut(s) 113, 568
Eco130I CCWWGG 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 324, 333
EcoT14I CCWWGG 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 307
FaiI YATR 4 cut(s) 61, 161, 163, 515
FaqI GGGAC 4 cut(s) 95, 331, 437, 661
FauI CCCGC 1 cut(s) 257
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 627
FokI GGATG 1 cut(s) 454
GlaI GCGC 3 cut(s) 6, 134, 567
GsaI CCCAGC 1 cut(s) 452
HaeIII GGCC 2 cut(s) 72, 260
HapII CCGG 9 cut(s) 26, 44, 68, 84, 97, 139, 219, 257, 487
HgaI GACGC 2 cut(s) 160, 337
HhaI GCGC 3 cut(s) 7, 135, 568
Hin1I GRCGYC 2 cut(s) 330, 435
Hin6I GCGC 3 cut(s) 5, 133, 566
HinP1I GCGC 3 cut(s) 5, 133, 566
HpaII CCGG 9 cut(s) 26, 44, 68, 84, 97, 139, 219, 257, 487
HphI GGTGA 3 cut(s) 367, 532, 664
Hpy166II GTNNAC 3 cut(s) 34, 474, 720
Hpy188I TCNGA 1 cut(s) 543
Hpy188III TCNNGA 4 cut(s) 280, 403, 439, 505
Hpy8I GTNNAC 3 cut(s) 34, 474, 720
Hpy99I CGWCG 7 cut(s) 209, 212, 317, 353, 437, 440, 499
HpyAV CCTTC 7 cut(s) 126, 130, 193, 271, 286, 462, 682
HpyCH4III ACNGT 3 cut(s) 547, 652, 669
HpyCH4IV ACGT 3 cut(s) 330, 435, 624
HpyCH4V TGCA 7 cut(s) 34, 180, 409, 484, 701, 720, 731
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 40, 132, 162, 165, 177, 565
HpyF3I CTNAG 2 cut(s) 464, 714
HpySE526I ACGT 3 cut(s) 330, 435, 624
Hsp92I GRCGYC 2 cut(s) 330, 435
HspAI GCGC 3 cut(s) 5, 133, 566
KflI GGGWCCC 1 cut(s) 318
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
Lsp1109I GCAGC 6 cut(s) 140, 147, 152, 155, 472, 580
LweI GCATC 5 cut(s) 140, 396, 471, 688, 699
MaeII ACGT 3 cut(s) 330, 435, 624
MaeIII GTNAC 1 cut(s) 340
MalI GATC 7 cut(s) 284, 401, 416, 540, 629, 659, 743
MboI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
MboII GAAGA 5 cut(s) 166, 220, 376, 586, 667
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 36, 722
MluCI AATT 2 cut(s) 290, 499
Mph1103I ATGCAT 1 cut(s) 733
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 479, 736
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 9 cut(s) 26, 44, 68, 84, 97, 139, 219, 257, 487
MspR9I CCNGG 8 cut(s) 45, 69, 84, 97, 140, 257, 326, 335
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 326, 335
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 7 cut(s) 13, 40, 132, 162, 165, 177, 565
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 6 cut(s) 45, 69, 84, 97, 140, 257
NdeI CATATG 1 cut(s) 161
NdeII GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
NgoMIV GCCGGC 1 cut(s) 218
NlaIV GGNNCC 3 cut(s) 319, 320, 362
NsiI ATGCAT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 432
PctI GAATGC 1 cut(s) 731
PdiI GCCGGC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 324, 333
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 2 cut(s) 324, 333
PspN4I GGNNCC 3 cut(s) 319, 320, 362
PspPI GGNCC 2 cut(s) 70, 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 3 cut(s) 81, 623, 666
RsaNI GTAC 3 cut(s) 80, 622, 665
RseI CAYNNNNRTG 2 cut(s) 479, 736
Sau3AI GATC 7 cut(s) 282, 399, 414, 538, 627, 657, 741
Sau96I GGNCC 2 cut(s) 70, 318
ScrFI CCNGG 8 cut(s) 45, 69, 84, 97, 140, 257, 326, 335
SduI GDGCHC 2 cut(s) 36, 722
SfaNI GCATC 5 cut(s) 140, 396, 471, 688, 699
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 479, 736
Sse9I AATT 2 cut(s) 290, 499
StyD4I CCNGG 8 cut(s) 43, 67, 82, 95, 138, 255, 324, 333
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 3 cut(s) 547, 652, 669
TaiI ACGT 3 cut(s) 333, 438, 627
TaqI TCGA 6 cut(s) 243, 294, 351, 378, 402, 455
TaqII GACCGA 1 cut(s) 326
TasI AATT 2 cut(s) 290, 499
TatI WGTACW 1 cut(s) 664
TauI GCSGC 4 cut(s) 159, 566, 675, 678
TseI GCWGC 6 cut(s) 135, 153, 165, 168, 460, 568
Tth111I GACNNNGTC 1 cut(s) 299
VneI GTGCAC 2 cut(s) 32, 718
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 290, 499
ZraI GACGTC 2 cut(s) 331, 436
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.