AT2G46300

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011168
Physical Location & Seq
Forward (+)
19008175 .. 19009651
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46300.1

Sequence Viewer

Length: 759 bp
ATGGCAGATTATCAGATGAACCCGGTTCTTCAAAAGCCACCAGGTTACAGAGATCCAAACATGTCCTCTCCTCCTCCTCCTCCACCTCCCATTCAACAACAACCTATGAGAAAAGCCGTCCCTATGCCTACTTCTTACCGACCAAAGAAAAAACGTAGAAGCTGTTGTCGTTTCTGTTGCTGTTGCATCTGCATTACTCTTGTTCTCTTCATCTTCCTCCTCTTGGTCGGAACAGCTGTTTTCTACCTCTGGTTCGATCCTAAGCTTCCCACTTTCAGCCTCGCTTCCTTCCGTCTCGACGGCTTCAAACTCGCCGACGATCCCGACGGCGCGTCTCTCTCCGCCACCGCCGTTGCCCGCGTTGAGATGAAGAATCCGAACTCGAAACTCGTTTTTTACTACGGAAACACTGCCGTTGATTTGAGCGTTGGTTCGGGAAACGATGAGACCGGGATGGGAGAGACGACGATGAATGGATTCCGACAAGGTCCCAAAAACTCGACGAGCGTGAAAGTGGAGACGACGGTGAAGAATCAGCTCGTGGAGAGAGGATTGGCTAAGAGACTCGCTGCGAAATTTCAGAGCAAAGATTTGGTCATTAACGTTGTTGCCAAGACTAAAGTTGGATTAGGTGTCGGCGGTATTAAGATCGGAATGCTCGCCGTTAATTTGAGATGCGGTGGCGTTAGCTTGAACAAGCTTGATACTGATTCACCTAAATGCATTCTCAATACACTCAAATGGGTAACTATACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

252

Amino Acids

27.56

Weight (kDa)

9.6

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 121 - 217 2.6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 332, 360
AciI CCGC 5 cut(s) 342, 348, 358, 639, 678
AclI AACGTT 1 cut(s) 603
AclWI GGATC 3 cut(s) 47, 251, 314
AcsI RAATTY 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 32, 95, 307, 694
AhdI GACNNNNNGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 6 cut(s) 162, 236, 265, 538, 690, 700
AluI AGCT 6 cut(s) 162, 236, 265, 538, 690, 700
Alw26I GTCTC 6 cut(s) 299, 339, 440, 455, 512, 556
AlwI GGATC 3 cut(s) 47, 251, 314
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 1 cut(s) 575
ArsI GACNNNNNNTTYG 2 cut(s) 579, 611
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 488
AsuC2I CCSGG 2 cut(s) 23, 451
AsuHPI GGTGA 2 cut(s) 538, 705
AvaII GGWCC 1 cut(s) 488
BauI CACGAG 1 cut(s) 539
BbvI GCAGC 1 cut(s) 556
BccI CCATC 1 cut(s) 448
BceAI ACGGC 6 cut(s) 101, 316, 335, 343, 398, 647
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 2 cut(s) 23, 451
BcoDI GTCTC 6 cut(s) 299, 339, 440, 455, 512, 556
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 23, 42, 451
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 3 cut(s) 23, 42, 451
BmsI GCATC 2 cut(s) 195, 665
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 23, 451
BsaI GGTCTC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 223
BseRI GAGGAG 5 cut(s) 60, 63, 66, 69, 209
BseXI GCAGC 1 cut(s) 556
Bsh1236I CGCG 2 cut(s) 332, 360
BsiSI CCGG 2 cut(s) 23, 450
BslFI GGGAC 2 cut(s) 104, 474
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 6 cut(s) 299, 339, 440, 455, 512, 556
BsmBI CGTCTC 4 cut(s) 299, 339, 455, 512
BsmFI GGGAC 2 cut(s) 104, 474
BsmI GAATGC 2 cut(s) 660, 723
Bso31I GGTCTC 1 cut(s) 440
Bsp143I GATC 4 cut(s) 52, 256, 319, 648
BspACI CCGC 5 cut(s) 342, 348, 358, 639, 678
BspFNI CGCG 2 cut(s) 332, 360
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 3 cut(s) 47, 251, 314
BspTNI GGTCTC 1 cut(s) 440
BssMI GATC 4 cut(s) 52, 256, 319, 648
BssSI CACGAG 1 cut(s) 539
Bst2BI CACGAG 1 cut(s) 539
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 526, 756
Bst6I CTCTTC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 358, 660
BstDEI CTNAG 2 cut(s) 261, 558
BstF5I GGATG 1 cut(s) 459
BstFNI CGCG 2 cut(s) 332, 360
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 55, 259, 322, 651
BstMAI GTCTC 6 cut(s) 299, 339, 440, 455, 512, 556
BstMBI GATC 4 cut(s) 52, 256, 319, 648
BstNI CCWGG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 3 cut(s) 21, 40, 449
BstUI CGCG 2 cut(s) 332, 360
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BtsCI GGATG 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 358, 660
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 488
CseI GACGC 1 cut(s) 321
CsiI ACCWGGT 1 cut(s) 40
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 61
DdeI CTNAG 2 cut(s) 261, 558
DpnI GATC 4 cut(s) 54, 258, 321, 650
DpnII GATC 4 cut(s) 52, 256, 319, 648
DriI GACNNNNNGTC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 725
Esp3I CGTCTC 4 cut(s) 299, 339, 455, 512
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 107, 125, 752
FaqI GGGAC 2 cut(s) 104, 474
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 570
GlaI GCGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 570
HapII CCGG 2 cut(s) 23, 450
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 332
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 263, 698
HinfI GANTC 5 cut(s) 373, 477, 532, 564, 710
HpaII CCGG 2 cut(s) 23, 450
HphI GGTGA 2 cut(s) 538, 705
Hpy188I TCNGA 6 cut(s) 15, 230, 378, 482, 582, 653
Hpy188III TCNNGA 3 cut(s) 296, 323, 435
Hpy99I CGWCG 6 cut(s) 302, 320, 329, 469, 505, 526
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 526, 756
HpyCH4IV ACGT 2 cut(s) 154, 603
HpyCH4V TGCA 3 cut(s) 186, 192, 723
HpyF3I CTNAG 2 cut(s) 261, 558
HpySE526I ACGT 2 cut(s) 154, 603
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 52, 256, 319, 648
LpnPI CCDG 5 cut(s) 27, 36, 54, 235, 463
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 2 cut(s) 195, 665
MabI ACCWGGT 1 cut(s) 40
MaeII ACGT 2 cut(s) 154, 603
MaeIII GTNAC 2 cut(s) 44, 745
MalI GATC 4 cut(s) 54, 258, 321, 650
MboI GATC 4 cut(s) 52, 256, 319, 648
MboII GAAGA 5 cut(s) 20, 199, 205, 382, 541
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 575, 667
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 3 cut(s) 208, 505, 604
Mph1103I ATGCAT 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 3 cut(s) 600, 645, 666
MslI CAYNNNNRTG 2 cut(s) 718, 739
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 23, 450
MspR9I CCNGG 3 cut(s) 23, 42, 451
Mva1269I GAATGC 2 cut(s) 660, 723
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 2 cut(s) 332, 360
NciI CCSGG 2 cut(s) 23, 451
NdeII GATC 4 cut(s) 52, 256, 319, 648
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 725
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PctI GAATGC 2 cut(s) 660, 723
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 4 cut(s) 373, 477, 532, 710
PflFI GACNNNGTC 1 cut(s) 486
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 488
PscI ACATGT 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 488
PspPPI RGGWCCY 1 cut(s) 488
PsuI RGATCY 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 236
RseI CAYNNNNRTG 2 cut(s) 718, 739
SaqAI TTAA 3 cut(s) 600, 645, 666
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 4 cut(s) 52, 256, 319, 648
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 3 cut(s) 23, 42, 451
SexAI ACCWGGT 1 cut(s) 40
SfaNI GCATC 2 cut(s) 195, 665
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 718, 739
Sse9I AATT 2 cut(s) 575, 667
SsiI CCGC 5 cut(s) 342, 348, 358, 639, 678
StyD4I CCNGG 3 cut(s) 21, 40, 449
TaaI ACNGT 2 cut(s) 526, 756
TaiI ACGT 2 cut(s) 157, 606
TaqI TCGA 4 cut(s) 255, 297, 383, 500
TasI AATT 2 cut(s) 575, 667
TfiI GAWTC 4 cut(s) 373, 477, 532, 710
Tru1I TTAA 3 cut(s) 600, 645, 666
Tru9I TTAA 3 cut(s) 600, 645, 666
TscAI CASTG 1 cut(s) 415
TseI GCWGC 1 cut(s) 569
TspDTI ATGAA 4 cut(s) 32, 199, 383, 485
TspGWI ACGGA 2 cut(s) 281, 417
TspRI CASTG 1 cut(s) 415
Tth111I GACNNNGTC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.