Rh1BG245200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011168
Physical Location & Seq
Forward (+)
37161754 .. 37180726
18973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG245200.1

Sequence Viewer

Length: 1083 bp
ATGGCCCAGCCACCACCAGTAAAACCGGTGCTGCAGAAGCCGCCGGGGTACAGAGACCCGAACCAACCTCCTAGACCGGTTCCAGGGCAGGTTCCCAGAAAACCTGTCCCTCTCCCTCCCTCATTTCATCCACAGCCGAAGTCCAGGCGCAGCAGCTGCTGCCGTGTCTTTTGCTGGGTGTGTTGCATTTTGATCCTTGTGATTATTGTCGTCGTCGCGCTGGCAGCCGGAATATTCTTCCTCTTATTCGATCCGAGGCTCCCGCTGGTTTACTTGCGGTCGTTTCGGATACCGCTCTTCAACACCACGGTGAAACCCGGCGGGACTTACCTCGACGCATGGACAGTTCCGGGGATGGAGGTGAAAAACCCCAACGGTAAGTTGGACATATTCTACTCAGGGGTGCAGGCCTACGTCAGCGTCGGGGACCCCAACGACGTAGGGTTGGTGTTGGGGATGAAAGACCTGACAGGGTTTACGCAGAAGTCGAGTAACACGACAAGTGTTAAGTTCGATTATGTGGTGAAGAACCGGCAGCTGAACGACGAGGTGGCGAAGAAGCTGAAGAGTCAGTATGTGAGCAAAGTGATGAGGGTTGGGGTGGAGGTGAAGGCCAAGTTGGGTTATGTTGTGAAGGGGTGGAGGCTAGGGACGATGAATATTGATGTGCTGTGTGGGGGTGTCACGATGAAGGAGATTCATGCTGGTCCGGTTGCTGAAGACATGTTTCATTGGCAAGCGACGATAATGGGCCCTCCTGACAGTCCTTATGCAGGGGGTGTCTTTCTAGTTACCATTCATTTCCCTCCTGATTATCCGTTTAAACCACCTAAGGTTGCGTTTAGGACTAAGGTCTTTCATCCAAATATCAACAGCAATGGAAGTATCTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCTCTGACCATATCCAAGGTGTTACTATCCATTTGTTCCCTGTTGACGGACCCCAACCCGGATGATCCCCTGGTGCCAGAAATTGCTCACATGTACAAGACAGACCGGTCAAAGTACGAGACAACTGCTAGGAGCTGGACCCAGAAGTATGCTATGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

360

Amino Acids

40.0

Weight (kDa)

9.46

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 230 - 353 1.6e-49 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01453 AT1G01453 AT2G46300 AT4G01110
fragaria_vesca FvH4_7g15840 FvH4_7g15840
malus_domestica MD01G1075000.v1.1 MD07G1144100.v1.1
prunus_persica Prupe.2G183000_v2.0.a1
pyrus_communis pycom01g10400
rosa_chinensis RchiOBHm_Chr1g0358651
rosa_laevigata RLG00000027938
rosa_roxburghii Rroxscaffold_4G00297730
rosa_rugosa Rorug01G0263800 Rorug01G0263900
rosa_samantha Rh1AG278400 Rh1BG245200 Rh1CG261900 Rh1DG273400
rosa_wichuraiana Rw1G024710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1027
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 994
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 41, 263, 277, 293, 321
AclWI GGATC 3 cut(s) 187, 245, 980
AcuI CTGAAG 2 cut(s) 584, 738
AfaI GTAC 3 cut(s) 50, 1016, 1037
AfiI CCNNNNNNNGG 4 cut(s) 83, 773, 967, 979
AflIII ACRYGT 2 cut(s) 723, 1011
AgeI ACCGGT 3 cut(s) 25, 76, 1026
AgsI TTSAA 2 cut(s) 301, 904
AjnI CCWGG 3 cut(s) 82, 143, 990
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 4 cut(s) 156, 538, 562, 1056
AluI AGCT 4 cut(s) 156, 538, 562, 1056
Alw26I GTCTC 2 cut(s) 48, 1034
AlwI GGATC 3 cut(s) 187, 245, 980
AlwNI CAGNNNCTG 2 cut(s) 156, 159
AoxI GGCC 4 cut(s) 3, 408, 612, 751
ApaI GGGCCC 1 cut(s) 755
ApeKI GCWGC 7 cut(s) 31, 150, 153, 156, 159, 224, 535
AsiGI ACCGGT 3 cut(s) 25, 76, 1026
AspLEI GCGC 2 cut(s) 150, 220
AspS9I GGNCC 7 cut(s) 4, 427, 707, 751, 752, 970, 1059
AsuC2I CCSGG 4 cut(s) 45, 318, 351, 980
AsuHPI GGTGA 4 cut(s) 322, 373, 535, 619
AvaII GGWCC 4 cut(s) 427, 707, 970, 1059
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 755
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 755, 920
BbsI GAAGAC 1 cut(s) 726
BbvI GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BciT130I CCWGG 3 cut(s) 84, 145, 992
BciVI GTATCC 1 cut(s) 282
BcnI CCSGG 4 cut(s) 45, 318, 351, 980
BcoDI GTCTC 2 cut(s) 48, 1034
BfaI CTAG 4 cut(s) 72, 647, 788, 1050
BfmI CTRYAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
BlsI GCNGC 8 cut(s) 33, 42, 152, 155, 158, 161, 226, 537
Bme1390I CCNGG 7 cut(s) 45, 84, 145, 318, 351, 980, 992
Bme18I GGWCC 4 cut(s) 427, 707, 970, 1059
BmgT120I GGNCC 7 cut(s) 4, 427, 707, 751, 752, 970, 1059
BmrFI CCNGG 7 cut(s) 45, 84, 145, 318, 351, 980, 992
BoxI GACNNNNGTC 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 726
BplI GAGNNNNNCTC 2 cut(s) 907, 939
BpuMI CCSGG 4 cut(s) 45, 318, 351, 980
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 7 cut(s) 44, 83, 254, 306, 350, 936, 990
BsaWI WCCGGW 4 cut(s) 25, 76, 709, 1026
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 773, 967, 979
Bse118I RCCGGY 4 cut(s) 25, 76, 531, 1026
Bse1I ACTGG 1 cut(s) 17
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 883
BseBI CCWGG 3 cut(s) 84, 145, 992
BseDI CCNNGG 7 cut(s) 44, 83, 254, 306, 350, 936, 990
BseGI GGATG 5 cut(s) 127, 360, 462, 859, 988
BseLI CCNNNNNNNGG 4 cut(s) 83, 773, 967, 979
BseMI GCAATG 1 cut(s) 883
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BseYI CCCAGC 2 cut(s) 6, 174
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 4 cut(s) 5, 410, 614, 753
BshNI GGYRCC 1 cut(s) 994
BshTI ACCGGT 3 cut(s) 25, 76, 1026
BsiEI CGRYCG 1 cut(s) 281
BslFI GGGAC 4 cut(s) 92, 337, 440, 664
BslI CCNNNNNNNGG 4 cut(s) 83, 773, 967, 979
BsmAI GTCTC 2 cut(s) 48, 1034
BsmFI GGGAC 4 cut(s) 92, 337, 440, 664
BsnI GGCC 4 cut(s) 5, 410, 614, 753
Bso31I GGTCTC 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 755, 920
Bsp1407I TGTACA 1 cut(s) 1014
Bsp143I GATC 3 cut(s) 192, 250, 985
BspACI CCGC 5 cut(s) 41, 263, 277, 293, 321
BspANI GGCC 4 cut(s) 5, 410, 614, 753
BspCNI CTCAG 1 cut(s) 410
BspFNI CGCG 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 3 cut(s) 187, 245, 980
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 883
BsrFI RCCGGY 4 cut(s) 25, 76, 531, 1026
BsrGI TGTACA 1 cut(s) 1014
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 4 cut(s) 25, 76, 531, 1026
BssECI CCNNGG 7 cut(s) 44, 83, 254, 306, 350, 936, 990
BssMI GATC 3 cut(s) 192, 250, 985
BssT1I CCWWGG 1 cut(s) 936
Bst2UI CCWGG 3 cut(s) 84, 145, 992
Bst4CI ACNGT 4 cut(s) 310, 346, 377, 764
Bst6I CTCTTC 2 cut(s) 302, 560
BstAPI GCANNNNNTGC 2 cut(s) 156, 159
BstAUI TGTACA 1 cut(s) 1014
BstC8I GCNNGC 3 cut(s) 222, 408, 738
BstDEI CTNAG 3 cut(s) 397, 831, 849
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 127, 360, 462, 859, 988
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 2 cut(s) 150, 220
BstKTI GATC 3 cut(s) 195, 253, 988
BstMAI GTCTC 2 cut(s) 48, 1034
BstMBI GATC 3 cut(s) 192, 250, 985
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
BstNI CCWGG 3 cut(s) 84, 145, 992
BstNSI RCATGY 2 cut(s) 727, 1015
BstPAI GACNNNNGTC 1 cut(s) 851
BstSCI CCNGG 7 cut(s) 43, 82, 143, 316, 349, 978, 990
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 755
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
BstV2I GAAGAC 1 cut(s) 726
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 4 cut(s) 5, 410, 614, 753
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 5 cut(s) 127, 360, 462, 859, 988
BtsI GCAGTG 1 cut(s) 917
BtsIMutI CAGTG 1 cut(s) 917
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 3 cut(s) 222, 408, 738
CaiI CAGNNNCTG 2 cut(s) 156, 159
CfoI GCGC 2 cut(s) 150, 220
Cfr10I RCCGGY 4 cut(s) 25, 76, 531, 1026
Cfr13I GGNCC 7 cut(s) 4, 427, 707, 751, 752, 970, 1059
CseI GACGC 2 cut(s) 344, 409
Csp6I GTAC 3 cut(s) 49, 1015, 1036
CspAI ACCGGT 3 cut(s) 25, 76, 1026
CviAII CATG 4 cut(s) 339, 701, 724, 1012
CviQI GTAC 3 cut(s) 49, 1015, 1036
DdeI CTNAG 3 cut(s) 397, 831, 849
DpnI GATC 3 cut(s) 194, 252, 987
DpnII GATC 3 cut(s) 192, 250, 985
DraI TTTAAA 1 cut(s) 823
DrdI GACNNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1027
Eam1104I CTCTTC 2 cut(s) 302, 560
EarI CTCTTC 2 cut(s) 302, 560
Eco130I CCWWGG 1 cut(s) 936
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 2 cut(s) 755, 920
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 4 cut(s) 427, 707, 970, 1059
Eco57I CTGAAG 2 cut(s) 584, 738
Eco81I CCTNAGG 1 cut(s) 831
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO109I RGGNCCY 2 cut(s) 427, 752
EcoRII CCWGG 3 cut(s) 82, 143, 990
EcoT14I CCWWGG 1 cut(s) 936
EcoT38I GRGCYC 2 cut(s) 755, 920
ErhI CCWWGG 1 cut(s) 936
FaeI CATG 4 cut(s) 342, 704, 727, 1015
FaqI GGGAC 4 cut(s) 92, 337, 440, 664
FatI CATG 4 cut(s) 338, 700, 723, 1011
FauI CCCGC 2 cut(s) 270, 314
Fnu4HI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
FokI GGATG 5 cut(s) 114, 367, 469, 846, 995
FriOI GRGCYC 2 cut(s) 755, 920
Fsp4HI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
FspBI CTAG 4 cut(s) 72, 647, 788, 1050
GlaI GCGC 2 cut(s) 149, 219
GluI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
GsaI CCCAGC 2 cut(s) 10, 178
HaeIII GGCC 4 cut(s) 5, 410, 614, 753
HgaI GACGC 2 cut(s) 344, 409
HhaI GCGC 2 cut(s) 150, 220
Hin1II CATG 4 cut(s) 342, 704, 727, 1015
Hin6I GCGC 2 cut(s) 148, 218
HinP1I GCGC 2 cut(s) 148, 218
HincII GTYRAC 1 cut(s) 966
HindII GTYRAC 1 cut(s) 966
HinfI GANTC 2 cut(s) 568, 697
HphI GGTGA 4 cut(s) 322, 373, 535, 619
Hpy166II GTNNAC 3 cut(s) 271, 477, 966
Hpy188I TCNGA 3 cut(s) 255, 288, 927
Hpy188III TCNNGA 3 cut(s) 685, 758, 809
Hpy8I GTNNAC 3 cut(s) 271, 477, 966
Hpy99I CGWCG 7 cut(s) 215, 218, 338, 425, 440, 548, 745
HpyAV CCTTC 3 cut(s) 604, 628, 685
HpyCH4III ACNGT 4 cut(s) 310, 346, 377, 764
HpyCH4IV ACGT 2 cut(s) 414, 438
HpyCH4V TGCA 4 cut(s) 34, 186, 406, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
HpyF3I CTNAG 3 cut(s) 397, 831, 849
HpySE526I ACGT 2 cut(s) 414, 438
Hsp92II CATG 4 cut(s) 342, 704, 727, 1015
HspAI GCGC 2 cut(s) 148, 218
KflI GGGWCCC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 192, 250, 985
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 3 cut(s) 264, 915, 1053
Lsp1109I GCAGC 7 cut(s) 18, 143, 146, 162, 165, 236, 547
MaeI CTAG 4 cut(s) 72, 647, 788, 1050
MaeII ACGT 2 cut(s) 414, 438
MaeIII GTNAC 4 cut(s) 491, 682, 790, 942
MalI GATC 3 cut(s) 194, 252, 987
MbiI CCGCTC 1 cut(s) 295
MboI GATC 3 cut(s) 192, 250, 985
MboII GAAGA 6 cut(s) 229, 289, 538, 568, 577, 731
MhlI GDGCHC 2 cut(s) 755, 920
MluCI AATT 1 cut(s) 1002
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 1 cut(s) 363
MseI TTAA 2 cut(s) 507, 822
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 3 cut(s) 156, 265, 538
MspR9I CCNGG 7 cut(s) 45, 84, 145, 318, 351, 980, 992
MssI GTTTAAAC 1 cut(s) 823
MvaI CCWGG 3 cut(s) 84, 145, 992
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 5 cut(s) 37, 40, 156, 159, 224
NciI CCSGG 4 cut(s) 45, 318, 351, 980
NdeII GATC 3 cut(s) 192, 250, 985
NlaIII CATG 4 cut(s) 342, 704, 727, 1015
NmuCI GTSAC 1 cut(s) 682
NspI RCATGY 2 cut(s) 727, 1015
OliI CACNNNNGTG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 410
PciI ACATGT 2 cut(s) 723, 1011
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 494
PfeI GAWTC 1 cut(s) 697
PinAI ACCGGT 3 cut(s) 25, 76, 1026
PkrI GCNGC 8 cut(s) 33, 42, 152, 155, 158, 161, 226, 537
PleI GAGTC 1 cut(s) 576
PmeI GTTTAAAC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 427
PscI ACATGT 2 cut(s) 723, 1011
PshAI GACNNNNGTC 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 82, 143, 990
PspFI CCCAGC 2 cut(s) 6, 174
PspGI CCWGG 3 cut(s) 82, 143, 990
PspOMI GGGCCC 1 cut(s) 751
PspPI GGNCC 7 cut(s) 4, 427, 707, 751, 752, 970, 1059
PspPPI RGGWCCY 1 cut(s) 427
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 156, 159
PvuII CAGCTG 2 cut(s) 156, 538
RsaI GTAC 3 cut(s) 50, 1016, 1037
RsaNI GTAC 3 cut(s) 49, 1015, 1036
RseI CAYNNNNRTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 507, 822
SatI GCNGC 8 cut(s) 32, 41, 151, 154, 157, 160, 225, 536
Sau3AI GATC 3 cut(s) 192, 250, 985
Sau96I GGNCC 7 cut(s) 4, 427, 707, 751, 752, 970, 1059
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 7 cut(s) 45, 84, 145, 318, 351, 980, 992
SduI GDGCHC 2 cut(s) 755, 920
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 4 cut(s) 427, 707, 970, 1059
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 1 cut(s) 1002
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 5 cut(s) 41, 263, 277, 293, 321
SspI AATATT 2 cut(s) 234, 661
SspMI CTAG 4 cut(s) 72, 647, 788, 1050
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 7 cut(s) 43, 82, 143, 316, 349, 978, 990
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 4 cut(s) 310, 346, 377, 764
TaiI ACGT 2 cut(s) 417, 441
TaqI TCGA 4 cut(s) 249, 333, 488, 513
TasI AATT 1 cut(s) 1002
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 2 cut(s) 507, 822
Tru9I TTAA 2 cut(s) 507, 822
TscAI CASTG 1 cut(s) 917
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 7 cut(s) 31, 150, 153, 156, 159, 224, 535
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 8 cut(s) 116, 473, 671, 689, 704, 719, 788, 848
TspGWI ACGGA 2 cut(s) 807, 983
TspRI CASTG 1 cut(s) 917
VpaK11BI GGWCC 4 cut(s) 427, 707, 970, 1059
XagI CCTNNNNNAGG 1 cut(s) 771
XceI RCATGY 2 cut(s) 727, 1015
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 4 cut(s) 72, 647, 788, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.