Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009790

Physical Location & Seq

Genomic Coordinates Forward (+)

185033 .. 187135

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATTTCGAAAGATCACCTTCATCATCTGGATCCTCTGGGTACAACCAAATCGTACCACATGAATACCTCCACCGTATCGCCGCCGTCTCCGGCATCATCAATTTCGTTGTCGCAATCGGCGTGGCTGGAGGTTCGTTTGTTCTACGTCCGTATCGCTCCTTGCGTCGTTGAGAACGTCCCTGACTTCCTCACCCTCCGTCACCCTCGTCGCGAAACCGGTGCTTCTCTTGAGGTTAACGGCGTTCGCGTTCCTTCGTCGCAGACGGCGTCGCTTAAACTCCGCCGTGACAGAGTCGACCGGGAATCGTCGGAGGTGACTTACGTGAGCACTGAGACCGTTCGCGTTACCGGATGCGTTGATTTCGAGGTTTATGATAACGAGGATATGGTCTTGTGTGGGAACCTAGATAGAATCGAAGGTGCTTGGAACAATGGAACTGTGAGTGATCCCAAGACTGGATGGGGCATGGATTGTTACATTGCTATGGGAAACGGACACGTGTCAGGTCCTTCTGCCTCTGTGTTTTTCCAGCCAAAGTTTGGAGTCTCGTCTCCGTCCGTCGAGGTTTATATAGCTGGTTGTTGTGGTGGTGTCCCGGTGATATTGACCAAGACGATTCAGGCGAGTCCGAGGAGGAAGGTGGCTAGGCACGTGACACTCGACGCTATCCCTGAGGATGAGGAAGTTGGCAAAGAGCAAGACATTGGTACCATTGGTGATGAATTGGCCCGTCAAAGCAAAGTACAGATGATGGAATCAGAAGTTGATGAATACGATGACTCAGATATGAAAATGGCACAGAGATATTACCCTGAAGGAATGTACGTTGATGAGGATGGTCAGCTCTCATGGTTCAATGCAGGAGTCAGAGTCGGAGTTGGGATAGGCCTTGGGATGTGTCTTGGTGTAGGCATTGGAGTTGGATTACTCATGCGTTCGTATCAAGCAACAACTAGTAACCTTCGTAGGAGGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

35.93

Weight (kDa)

5.25

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01500
fragaria_vesca	FvH4_7g15170
malus_domestica	MD01G1070200.v1.1 MD07G1132200.v1.1
prunus_persica	Prupe.2G176400_v2.0.a1
pyrus_communis	pycom01g09940
rosa_chinensis	RchiOBHm_Chr1g0357481 RchiOBHm_Chr1g0357581 RchiOBHm_Chr1g0358021
rosa_laevigata	RLG00000028019
rosa_multiflora	Rmu_sc0005812.1_g000011 Rmu_sc0010521.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298730 Rroxscaffold_4G00298740
rosa_rugosa	Rorug01G0256700 Rorug01G0256800
rosa_samantha	Rh1AG271000 Rh1BG237800 Rh1CG254700 Rh1DG265800
rosa_wichuraiana	Rw1G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	297
AccII	CGCG	3 cut(s)	213, 249, 345
AciI	CCGC	2 cut(s)	83, 283
AclWI	GGATC	3 cut(s)	26, 39, 443
AcuI	CTGAAG	1 cut(s)	837
AcvI	CACGTG	2 cut(s)	502, 655
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	5 cut(s)	43, 56, 712, 747, 827
AfiI	CCNNNNNNNGG	2 cut(s)	458, 542
AflIII	ACRYGT	2 cut(s)	499, 501
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	859
AhlI	ACTAGT	1 cut(s)	956
AluBI	AGCT	2 cut(s)	578, 847
AluI	AGCT	2 cut(s)	578, 847
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	4 cut(s)	93, 329, 553, 558
AlwI	GGATC	3 cut(s)	26, 39, 443
AoxI	GGCC	2 cut(s)	729, 889
AsiGI	ACCGGT	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	509, 730
AsuC2I	CCSGG	2 cut(s)	302, 599
AsuHPI	GGTGA	6 cut(s)	8, 184, 194, 328, 613, 731
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	675
BaeI	ACNNNNGTAYC	4 cut(s)	136, 169, 694, 727
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	710
BbrPI	CACGTG	2 cut(s)	502, 655
Bbv12I	GWGCWC	1 cut(s)	332
BccI	CCATC	3 cut(s)	456, 748, 833
BceAI	ACGGC	4 cut(s)	70, 256, 270, 282
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BcnI	CCSGG	2 cut(s)	302, 599
BcoDI	GTCTC	4 cut(s)	93, 329, 553, 558
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	3 cut(s)	407, 648, 957
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	302, 599
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	509, 730
BmiI	GGNNCC	3 cut(s)	33, 404, 712
BmrFI	CCNGG	2 cut(s)	302, 599
BmsI	GCATC	2 cut(s)	104, 344
BoxI	GACNNNNGTC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	302, 599
BsaAI	YACGTR	3 cut(s)	325, 502, 655
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	632, 892
BsaWI	WCCGGW	2 cut(s)	218, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 542
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	463
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	632, 892
BseGI	GGATG	5 cut(s)	359, 467, 685, 844, 903
BseLI	CCNNNNNNNGG	2 cut(s)	458, 542
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	324, 666, 798
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	649
Bsh1236I	CGCG	3 cut(s)	213, 249, 345
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	731, 891
BshNI	GGYRCC	1 cut(s)	710
BshTI	ACCGGT	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	5 cut(s)	92, 219, 301, 351, 599
BslFI	GGGAC	2 cut(s)	164, 581
BslI	CCNNNNNNNGG	2 cut(s)	458, 542
BsmAI	GTCTC	4 cut(s)	93, 329, 553, 558
BsmBI	CGTCTC	2 cut(s)	93, 558
BsmFI	GGGAC	2 cut(s)	164, 581
BsnI	GGCC	2 cut(s)	731, 891
Bso31I	GGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	13, 31, 448
Bsp68I	TCGCGA	1 cut(s)	213
BspACI	CCGC	2 cut(s)	83, 283
BspANI	GGCC	2 cut(s)	731, 891
BspCNI	CTCAG	3 cut(s)	325, 667, 797
BspFNI	CGCG	3 cut(s)	213, 249, 345
BspLI	GGNNCC	3 cut(s)	33, 404, 712
BspPI	GGATC	3 cut(s)	26, 39, 443
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	710
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	632, 892
BssMI	GATC	3 cut(s)	13, 31, 448
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	892
Bst4CI	ACNGT	3 cut(s)	76, 340, 442
BstACI	GRCGYC	1 cut(s)	269
BstBAI	YACGTR	3 cut(s)	325, 502, 655
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	333, 675, 784
BstF5I	GGATG	5 cut(s)	359, 467, 685, 844, 903
BstFNI	CGCG	3 cut(s)	213, 249, 345
BstKTI	GATC	3 cut(s)	16, 34, 451
BstMAI	GTCTC	4 cut(s)	93, 329, 553, 558
BstMBI	GATC	3 cut(s)	13, 31, 448
BstMCI	CGRYCG	1 cut(s)	301
BstPAI	GACNNNNGTC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	300, 597
BstUI	CGCG	3 cut(s)	213, 249, 345
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	731, 891
BtsCI	GGATG	5 cut(s)	359, 467, 685, 844, 903
BtsIMutI	CAGTG	1 cut(s)	330
BtuMI	TCGCGA	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	509, 730
CseI	GACGC	3 cut(s)	154, 258, 674
Csp6I	GTAC	5 cut(s)	42, 55, 711, 746, 826
CspAI	ACCGGT	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	104, 139
CviAII	CATG	4 cut(s)	61, 469, 852, 934
CviJI	RGCY	7 cut(s)	127, 535, 578, 647, 731, 847, 891
CviKI_1	RGCY	7 cut(s)	127, 535, 578, 647, 731, 847, 891
CviQI	GTAC	5 cut(s)	42, 55, 711, 746, 826
DdeI	CTNAG	3 cut(s)	333, 675, 784
DpnI	GATC	3 cut(s)	15, 33, 450
DpnII	GATC	3 cut(s)	13, 31, 448
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	892
Eco147I	AGGCCT	1 cut(s)	891
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	837
Eco72I	CACGTG	2 cut(s)	502, 655
Eco81I	CCTNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	892
ErhI	CCWWGG	1 cut(s)	892
Esp3I	CGTCTC	2 cut(s)	93, 558
FaeI	CATG	4 cut(s)	64, 472, 855, 937
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	2 cut(s)	164, 581
FatI	CATG	4 cut(s)	60, 468, 851, 933
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	5 cut(s)	366, 474, 692, 851, 910
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	3 cut(s)	407, 648, 957
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	731, 891
HapII	CCGG	5 cut(s)	92, 219, 301, 351, 599
HgaI	GACGC	3 cut(s)	154, 258, 674
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	64, 472, 855, 937
HincII	GTYRAC	2 cut(s)	238, 298
HindII	GTYRAC	2 cut(s)	238, 298
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	5 cut(s)	92, 219, 301, 351, 599
HphI	GGTGA	6 cut(s)	8, 184, 194, 328, 613, 731
Hpy166II	GTNNAC	2 cut(s)	238, 298
Hpy188I	TCNGA	7 cut(s)	313, 633, 763, 787, 872, 878, 983
Hpy188III	TCNNGA	3 cut(s)	29, 212, 230
Hpy8I	GTNNAC	2 cut(s)	238, 298
Hpy99I	CGWCG	7 cut(s)	170, 213, 262, 274, 313, 566, 668
HpyAV	CCTTC	7 cut(s)	29, 264, 413, 522, 634, 812, 974
HpyCH4III	ACNGT	3 cut(s)	76, 340, 442
HpyCH4IV	ACGT	6 cut(s)	147, 177, 324, 501, 654, 828
HpyCH4V	TGCA	1 cut(s)	863
HpyF3I	CTNAG	3 cut(s)	333, 675, 784
HpySE526I	ACGT	6 cut(s)	147, 177, 324, 501, 654, 828
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	64, 472, 855, 937
KpnI	GGTACC	1 cut(s)	714
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	13, 31, 448
LmnI	GCTCC	1 cut(s)	163
LweI	GCATC	2 cut(s)	104, 344
MaeI	CTAG	3 cut(s)	407, 648, 957
MaeII	ACGT	6 cut(s)	147, 177, 324, 501, 654, 828
MaeIII	GTNAC	7 cut(s)	200, 287, 316, 346, 476, 655, 959
MalI	GATC	3 cut(s)	15, 33, 450
MboI	GATC	3 cut(s)	13, 31, 448
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	102, 725
MlyI	GAGTC	6 cut(s)	303, 555, 637, 776, 876, 882
MmeI	TCCRAC	3 cut(s)	291, 856, 904
MseI	TTAA	2 cut(s)	237, 276
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	5 cut(s)	92, 219, 301, 351, 599
MspR9I	CCNGG	2 cut(s)	302, 599
MvnI	CGCG	3 cut(s)	213, 249, 345
NciI	CCSGG	2 cut(s)	302, 599
NdeII	GATC	3 cut(s)	13, 31, 448
NlaIII	CATG	4 cut(s)	64, 472, 855, 937
NlaIV	GGNNCC	3 cut(s)	33, 404, 712
NmuCI	GTSAC	4 cut(s)	200, 287, 316, 655
NruI	TCGCGA	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	7 cut(s)	119, 162, 174, 246, 266, 623, 660
PfeI	GAWTC	4 cut(s)	305, 414, 619, 758
PflFI	GACNNNGTC	2 cut(s)	268, 293
PflMI	CCANNNNNTGG	1 cut(s)	542
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	6 cut(s)	302, 554, 636, 776, 875, 881
PmaCI	CACGTG	2 cut(s)	502, 655
PmlI	CACGTG	2 cut(s)	502, 655
PpsI	GAGTC	6 cut(s)	302, 554, 636, 776, 875, 881
Ppu21I	YACGTR	3 cut(s)	325, 502, 655
PpuMI	RGGWCCY	1 cut(s)	509
PshAI	GACNNNNGTC	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	509
PspCI	CACGTG	2 cut(s)	502, 655
PspN4I	GGNNCC	3 cut(s)	33, 404, 712
PspPI	GGNCC	2 cut(s)	509, 730
PspPPI	RGGWCCY	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	31
PsyI	GACNNNGTC	2 cut(s)	268, 293
RruI	TCGCGA	1 cut(s)	213
RsaI	GTAC	5 cut(s)	43, 56, 712, 747, 827
RsaNI	GTAC	5 cut(s)	42, 55, 711, 746, 826
RseI	CAYNNNNRTG	1 cut(s)	485
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	237, 276
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	3 cut(s)	13, 31, 448
Sau96I	GGNCC	2 cut(s)	509, 730
SchI	GAGTC	6 cut(s)	303, 555, 637, 776, 876, 882
ScrFI	CCNGG	2 cut(s)	302, 599
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	2 cut(s)	104, 344
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	956
Sse9I	AATT	2 cut(s)	102, 725
SseBI	AGGCCT	1 cut(s)	891
SsiI	CCGC	2 cut(s)	83, 283
SspMI	CTAG	3 cut(s)	407, 648, 957
StuI	AGGCCT	1 cut(s)	891
StyD4I	CCNGG	2 cut(s)	300, 597
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	3 cut(s)	76, 340, 442
TaiI	ACGT	6 cut(s)	150, 180, 327, 504, 657, 831
TaqI	TCGA	6 cut(s)	8, 297, 366, 417, 564, 663
TasI	AATT	2 cut(s)	102, 725
TatI	WGTACW	1 cut(s)	745
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	4 cut(s)	305, 414, 619, 758
Tru1I	TTAA	2 cut(s)	237, 276
Tru9I	TTAA	2 cut(s)	237, 276
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	4 cut(s)	200, 287, 316, 655
Tsp45I	GTSAC	4 cut(s)	200, 287, 316, 655
TspDTI	ATGAA	5 cut(s)	11, 77, 738, 786, 806
TspGWI	ACGGA	5 cut(s)	140, 188, 510, 546, 550
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	2 cut(s)	268, 293
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	3 cut(s)	407, 648, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.