Rroxscaffold_4G00298740

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
18573014 .. 18573787
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298740.1

Sequence Viewer

Length: 774 bp
ATGGAACCGCAGCATGACAAGGACGCGTCGTCCATGGCGCCCAAGACGAAGAGTGCCAATTCGTACCAAATGCTGAACGGGCCGTCGCTGACGCACTCGGCCTGGTTCGAAATCCGGTTGTTCTACTTCCGAATCGCGCCGTGCGTCATCGACAGCGTGCCGGACCACCTCACGCTCTGCCACCTCCGCCGTGACATCGGCGTGTCTCTCGAGATCAACGGTGCCAGGATTCCGAACTCCGACTCGACCTCGCTCACGCTCCGCCGCGACCGGCTGGACAAGGAGTCGTCGGAGGTGACGTACGTGGCCACCGACAGCGTGAGGGTCACCGGCGGGGTTGAGTTTGAGGTCTACGAGAACAATGACATGGTGCTGTGCGGGTCGTTGGAGAGGATGGAAGGCGTTTGGCTTAATGGGAATGCGGGGATGGAGAATGATTCCAAGACGGGTTGGAGTATGGATTGTTATATGGATGCGTCTATTAATTCCGGCTCTTTGGCATTTTTCCAGCCGAAACTCGGGGTTTCGGCGCCGTCTATAGAGGTTTATATCGTCGGGTGCTGCTCTGATGTGCCAGTGATATTGACAAAGACAATACAGATTAGTCCCAGGCGGAAGTGCCCAAGGCATGCCACTCTGGATGCTATTCCTGAGGAGGAGGAGGAGGAGGTCGGGAAGGAGCATAGCAACAGCTGTAATGAGTTAATTCGTCAACCCATTAATGGGTTGGATTTTAGGACTTCTACAAAATGTATTCCATTCACAATGCTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

28.6

Weight (kDa)

5.04

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 37, 221, 529
AccI GTMKAC 1 cut(s) 351
AccII CGCG 3 cut(s) 26, 137, 267
AciI CCGC 8 cut(s) 8, 187, 262, 265, 333, 378, 422, 613
AcoI YGGCCR 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 38, 530
AfaI GTAC 2 cut(s) 65, 302
AfiI CCNNNNNNNGG 3 cut(s) 518, 722, 723
AflIII ACRYGT 1 cut(s) 24
AhdI GACNNNNNGTC 2 cut(s) 28, 283
AjnI CCWGG 3 cut(s) 101, 224, 608
AluBI AGCT 1 cut(s) 693
AluI AGCT 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 210
Ama87I CYCGRG 2 cut(s) 209, 518
AoxI GGCC 3 cut(s) 80, 99, 306
ApeKI GCWGC 2 cut(s) 10, 561
AseI ATTAAT 2 cut(s) 483, 720
AspLEI GCGC 3 cut(s) 40, 139, 532
AspS9I GGNCC 2 cut(s) 80, 163
AsuHPI GGTGA 2 cut(s) 307, 319
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 2 cut(s) 209, 518
AvaII GGWCC 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 651
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 3 cut(s) 37, 221, 529
BbvI GCAGC 2 cut(s) 22, 548
BccI CCATC 2 cut(s) 388, 421
BceAI ACGGC 4 cut(s) 67, 124, 174, 517
BciT130I CCWGG 3 cut(s) 103, 226, 610
BcoDI GTCTC 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 2 cut(s) 41, 533
BisI GCNGC 3 cut(s) 11, 265, 562
BlsI GCNGC 3 cut(s) 12, 266, 563
Bme1390I CCNGG 3 cut(s) 103, 226, 610
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 2 cut(s) 28, 283
BmeT110I CYCGRG 2 cut(s) 209, 518
BmgT120I GGNCC 2 cut(s) 80, 163
BmiI GGNNCC 4 cut(s) 6, 39, 223, 531
BmrFI CCNGG 3 cut(s) 103, 226, 610
BmsI GCATC 2 cut(s) 463, 631
Bpu14I TTCGAA 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 38, 530
BsaJI CCNNGG 3 cut(s) 33, 608, 623
BsaWI WCCGGW 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 722, 723
Bse118I RCCGGY 2 cut(s) 270, 329
Bse1I ACTGG 1 cut(s) 575
Bse21I CCTNAGG 1 cut(s) 651
BseBI CCWGG 3 cut(s) 103, 226, 610
BseDI CCNNGG 3 cut(s) 33, 608, 623
BseGI GGATG 4 cut(s) 399, 432, 478, 646
BseLI CCNNNNNNNGG 3 cut(s) 518, 722, 723
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 575
BseRI GAGGAG 5 cut(s) 668, 671, 674, 677, 680
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 2 cut(s) 22, 548
Bsh1236I CGCG 3 cut(s) 26, 137, 267
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 82, 101, 308
BshNI GGYRCC 3 cut(s) 37, 221, 529
BsiEI CGRYCG 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 209, 518
BsiSI CCGG 5 cut(s) 115, 161, 271, 330, 489
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 3 cut(s) 518, 722, 723
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 3 cut(s) 82, 101, 308
BsoBI CYCGRG 2 cut(s) 209, 518
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 8 cut(s) 8, 187, 262, 265, 333, 378, 422, 613
BspANI GGCC 3 cut(s) 82, 101, 308
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 3 cut(s) 26, 137, 267
BspLI GGNNCC 4 cut(s) 6, 39, 223, 531
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 3 cut(s) 37, 221, 529
BsrFI RCCGGY 2 cut(s) 270, 329
BsrI ACTGG 1 cut(s) 575
BssAI RCCGGY 2 cut(s) 270, 329
BssECI CCNNGG 3 cut(s) 33, 608, 623
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 2 cut(s) 38, 530
BssT1I CCWWGG 2 cut(s) 33, 623
Bst2UI CCWGG 3 cut(s) 103, 226, 610
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 2 cut(s) 38, 530
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 158, 630
BstDEI CTNAG 1 cut(s) 651
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 4 cut(s) 399, 432, 478, 646
BstFNI CGCG 3 cut(s) 26, 137, 267
BstH2I RGCGCY 2 cut(s) 41, 533
BstHHI GCGC 3 cut(s) 40, 139, 532
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 1 cut(s) 213
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 79, 186
BstNI CCWGG 3 cut(s) 103, 226, 610
BstNSI RCATGY 1 cut(s) 632
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 101, 224, 608
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 3 cut(s) 26, 137, 267
BstV1I GCAGC 2 cut(s) 22, 548
Bsu36I CCTNAGG 1 cut(s) 651
BsuRI GGCC 3 cut(s) 82, 101, 308
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 399, 432, 478, 646
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 2 cut(s) 158, 630
CfoI GCGC 3 cut(s) 40, 139, 532
Cfr10I RCCGGY 2 cut(s) 270, 329
Cfr13I GGNCC 2 cut(s) 80, 163
CseI GACGC 5 cut(s) 15, 32, 100, 133, 465
Csp6I GTAC 2 cut(s) 64, 301
CviAII CATG 4 cut(s) 14, 34, 367, 629
CviJI RGCY 8 cut(s) 82, 101, 274, 308, 409, 492, 511, 693
CviKI_1 RGCY 8 cut(s) 82, 101, 274, 308, 409, 492, 511, 693
CviQI GTAC 2 cut(s) 64, 301
DdeI CTNAG 1 cut(s) 651
DinI GGCGCC 2 cut(s) 39, 531
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DriI GACNNNNNGTC 2 cut(s) 28, 283
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 2 cut(s) 28, 283
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 3 cut(s) 176, 251, 628
Eco130I CCWWGG 2 cut(s) 33, 623
Eco47I GGWCC 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 651
Eco88I CYCGRG 2 cut(s) 209, 518
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 101, 224, 608
EcoT14I CCWWGG 2 cut(s) 33, 623
EgeI GGCGCC 2 cut(s) 39, 531
EheI GGCGCC 2 cut(s) 39, 531
ErhI CCWWGG 2 cut(s) 33, 623
FaeI CATG 4 cut(s) 17, 37, 370, 632
FaqI GGGAC 1 cut(s) 591
FatI CATG 4 cut(s) 13, 33, 366, 628
FauI CCCGC 3 cut(s) 326, 371, 415
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 11, 265, 562
FokI GGATG 4 cut(s) 406, 439, 485, 653
Fsp4HI GCNGC 3 cut(s) 11, 265, 562
GlaI GCGC 3 cut(s) 39, 138, 531
GluI GCNGC 3 cut(s) 11, 265, 562
HaeII RGCGCY 2 cut(s) 41, 533
HaeIII GGCC 3 cut(s) 82, 101, 308
HapII CCGG 5 cut(s) 115, 161, 271, 330, 489
HgaI GACGC 5 cut(s) 15, 32, 100, 133, 465
HhaI GCGC 3 cut(s) 40, 139, 532
Hin1I GRCGYC 2 cut(s) 38, 530
Hin1II CATG 4 cut(s) 17, 37, 370, 632
Hin6I GCGC 3 cut(s) 38, 137, 530
HinP1I GCGC 3 cut(s) 38, 137, 530
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HinfI GANTC 5 cut(s) 132, 229, 242, 284, 437
HpaII CCGG 5 cut(s) 115, 161, 271, 330, 489
HphI GGTGA 2 cut(s) 307, 319
Hpy166II GTNNAC 2 cut(s) 352, 713
Hpy188I TCNGA 5 cut(s) 131, 234, 241, 292, 568
Hpy188III TCNNGA 5 cut(s) 209, 211, 638, 650, 673
Hpy8I GTNNAC 2 cut(s) 352, 713
Hpy99I CGWCG 4 cut(s) 31, 88, 292, 557
HpyAV CCTTC 2 cut(s) 392, 670
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 299, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 186
HpyF3I CTNAG 1 cut(s) 651
HpySE526I ACGT 2 cut(s) 299, 303
Hsp92I GRCGYC 2 cut(s) 38, 530
Hsp92II CATG 4 cut(s) 17, 37, 370, 632
HspAI GCGC 3 cut(s) 38, 137, 530
KasI GGCGCC 2 cut(s) 37, 529
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 264, 679
Lsp1109I GCAGC 2 cut(s) 22, 548
LweI GCATC 2 cut(s) 463, 631
MaeII ACGT 2 cut(s) 299, 303
MaeIII GTNAC 3 cut(s) 191, 295, 325
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 3 cut(s) 58, 484, 705
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 2 cut(s) 38, 530
MlyI GAGTC 2 cut(s) 236, 293
MmeI TCCRAC 5 cut(s) 264, 270, 366, 431, 708
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 411, 483, 704, 720
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 693
MspI CCGG 5 cut(s) 115, 161, 271, 330, 489
MspR9I CCNGG 3 cut(s) 103, 226, 610
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 103, 226, 610
MvnI CGCG 3 cut(s) 26, 137, 267
MwoI GCNNNNNNNGC 2 cut(s) 79, 186
NarI GGCGCC 2 cut(s) 38, 530
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 213
NlaIII CATG 4 cut(s) 17, 37, 370, 632
NlaIV GGNNCC 4 cut(s) 6, 39, 223, 531
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 3 cut(s) 191, 295, 325
NspI RCATGY 1 cut(s) 632
NspV TTCGAA 1 cut(s) 108
PaeI GCATGC 1 cut(s) 632
PaeR7I CTCGAG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 296, 309
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 3 cut(s) 132, 229, 437
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 3 cut(s) 12, 266, 563
PleI GAGTC 2 cut(s) 236, 292
PluTI GGCGCC 2 cut(s) 41, 533
PpsI GAGTC 2 cut(s) 236, 292
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 2 cut(s) 483, 720
Psp6I CCWGG 3 cut(s) 101, 224, 608
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 101, 224, 608
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 6, 39, 223, 531
PspPI GGNCC 2 cut(s) 80, 163
PvuII CAGCTG 1 cut(s) 693
RsaI GTAC 2 cut(s) 65, 302
RsaNI GTAC 2 cut(s) 64, 301
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 4 cut(s) 411, 483, 704, 720
SatI GCNGC 3 cut(s) 11, 265, 562
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 80, 163
SchI GAGTC 2 cut(s) 236, 293
ScrFI CCNGG 3 cut(s) 103, 226, 610
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 2 cut(s) 463, 631
SfcI CTRYAG 1 cut(s) 537
SfoI GGCGCC 2 cut(s) 39, 531
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SphI GCATGC 1 cut(s) 632
Sse9I AATT 3 cut(s) 58, 484, 705
SsiI CCGC 8 cut(s) 8, 187, 262, 265, 333, 378, 422, 613
SspDI GGCGCC 2 cut(s) 37, 529
StyD4I CCNGG 3 cut(s) 101, 224, 608
StyI CCWWGG 2 cut(s) 33, 623
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 2 cut(s) 302, 306
TaqI TCGA 4 cut(s) 108, 150, 210, 245
TasI AATT 3 cut(s) 58, 484, 705
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 132, 229, 437
Tru1I TTAA 4 cut(s) 411, 483, 704, 720
Tru9I TTAA 4 cut(s) 411, 483, 704, 720
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 3 cut(s) 191, 295, 325
TseI GCWGC 2 cut(s) 10, 561
Tsp45I GTSAC 3 cut(s) 191, 295, 325
TspRI CASTG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 2 cut(s) 483, 720
XceI RCATGY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.