Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009790

Physical Location & Seq

Genomic Coordinates Reverse (-)

17428314 .. 17431378

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1070200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGGCAGCATGACAAAAATTCGATCCAAATTCTAAACGGGCCGTCGTTGGCCCACTCCGCCTGGTTCGAAATCCGGTTGTTTTACGTCCGGGTTGCGCCCTGCGTGATTGGGAGCGTTCCCGACCACCTCACGCTCCGCCACCTCCGACGCGAGATTGGGGTATCGCTTGAAATCAACGGGACCCGGGTTCCCGCGTCGGACTCGGCCTCGCTCACGCTCCGCCGAGATCGGGTCGATAAGGAGTCGTCGGAGGTGACGTACGTCAGCACCGATAGCGTGAGGGTCACCGGTGGGGTTGAATTTGAGGTGTACGAGAACAATGACATGGTTCTGTGTGGGTCGCTGGAGCGGATGGAGGGTGTTTGGCTCAATGGAAATGCGGGGGGATTGGAGAACGATTCGAGAACCGGGTGGAGTGTGGATTGCTACATGGCCGCCTCGATCAATTCGGGTTCTTCCGCCTTTTTCCGGCCAAAACTCGGCGTCTCTGCACCGTCAATAGAGGTATATATCGCCGGGTGTTGCTCCGGGGTGCCCGTGATATTGACGAAAACCATACAGGTTAGTCCGAGGCGGAAGGGCCCGAGGCATGCAACGCTCGATGCCATTCCGGAGGATGAGGAGGTTGGGAAGGAGCACACCAAGGGCTGTAATGGGACGATTCGCCGGAAAGTTCAGATCACAGACTCTGAAATTGATGAGTATGAGGCAGAAGGGAAAATCGGACATCATTTCTACTCTGATGAAATGTACACCGGTGAAGACGGCCAACTTACATGGTTTAATGCTGGTGTTAGAGTTGGTGTTGGAATTGGCCTTGGGATGTGCCTTGGGATAGGGATTGGTGTTGGATTGCTCATGCGTTCGTATCAAGCGACTACCAGTAATTTCAGGAGGAGGTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

304

Amino Acids

33.21

Weight (kDa)

5.94

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01500
fragaria_vesca	FvH4_7g15170
malus_domestica	MD01G1070200.v1.1 MD07G1132200.v1.1
prunus_persica	Prupe.2G176400_v2.0.a1
pyrus_communis	pycom01g09940
rosa_chinensis	RchiOBHm_Chr1g0357481 RchiOBHm_Chr1g0357581 RchiOBHm_Chr1g0358021
rosa_laevigata	RLG00000028019
rosa_multiflora	Rmu_sc0005812.1_g000011 Rmu_sc0010521.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298730 Rroxscaffold_4G00298740
rosa_rugosa	Rorug01G0256700 Rorug01G0256800
rosa_samantha	Rh1AG271000 Rh1BG237800 Rh1CG254700 Rh1DG265800
rosa_wichuraiana	Rw1G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	535
AccBSI	CCGCTC	1 cut(s)	352
AccII	CGCG	2 cut(s)	153, 197
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	9 cut(s)	60, 139, 195, 223, 352, 383, 438, 462, 577
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	3 cut(s)	435, 473, 769
AcsI	RAATTY	3 cut(s)	19, 30, 302
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	3 cut(s)	263, 314, 755
AfiI	CCNNNNNNNGG	3 cut(s)	232, 471, 482
AgeI	ACCGGT	2 cut(s)	290, 758
AgsI	TTSAA	2 cut(s)	173, 302
AjnI	CCWGG	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	19
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	2 cut(s)	186, 586
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	8 cut(s)	41, 51, 207, 435, 473, 583, 769, 817
ApaI	GGGCCC	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	3 cut(s)	19, 30, 302
AsiGI	ACCGGT	2 cut(s)	290, 758
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	5 cut(s)	41, 52, 183, 583, 584
AsuC2I	CCSGG	6 cut(s)	92, 187, 188, 412, 520, 532
AsuHPI	GGTGA	3 cut(s)	268, 280, 773
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	2 cut(s)	186, 586
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	2 cut(s)	540, 587
BanI	GGYRCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	2 cut(s)	28, 784
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	6 cut(s)	92, 187, 188, 412, 520, 532
BcoDI	GTCTC	1 cut(s)	493
BisI	GCNGC	2 cut(s)	8, 438
BlsI	GCNGC	2 cut(s)	9, 439
Bme1390I	CCNGG	7 cut(s)	64, 92, 187, 188, 412, 520, 532
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	2 cut(s)	186, 586
BmgT120I	GGNCC	5 cut(s)	41, 52, 183, 583, 584
BmiI	GGNNCC	5 cut(s)	184, 185, 192, 537, 585
BmrFI	CCNGG	7 cut(s)	64, 92, 187, 188, 412, 520, 532
BmsI	GCATC	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	771
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	6 cut(s)	92, 187, 188, 412, 520, 532
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	7 cut(s)	186, 531, 572, 587, 645, 820, 832
BsaWI	WCCGGW	4 cut(s)	75, 290, 613, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 471, 482
Bse118I	RCCGGY	2 cut(s)	290, 758
Bse1I	ACTGG	1 cut(s)	885
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	7 cut(s)	186, 531, 572, 587, 645, 820, 832
BseGI	GGATG	3 cut(s)	360, 625, 831
BseLI	CCNNNNNNNGG	3 cut(s)	232, 471, 482
BseNI	ACTGG	1 cut(s)	885
BseRI	GAGGAG	1 cut(s)	638
BseSI	GKGCMC	2 cut(s)	540, 587
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	2 cut(s)	153, 197
BshFI	GGCC	8 cut(s)	43, 53, 209, 437, 475, 585, 771, 819
BshNI	GGYRCC	1 cut(s)	535
BshTI	ACCGGT	2 cut(s)	290, 758
BsiHKAI	GWGCWC	1 cut(s)	642
BsiHKCI	CYCGRG	2 cut(s)	186, 586
BsiWI	CGTACG	1 cut(s)	261
BslFI	GGGAC	2 cut(s)	196, 673
BslI	CCNNNNNNNGG	3 cut(s)	232, 471, 482
BsmAI	GTCTC	1 cut(s)	493
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	196, 673
BsnI	GGCC	8 cut(s)	43, 53, 209, 437, 475, 585, 771, 819
BsoBI	CYCGRG	2 cut(s)	186, 586
Bsp119I	TTCGAA	1 cut(s)	69
Bsp120I	GGGCCC	1 cut(s)	583
Bsp1286I	GDGCHC	3 cut(s)	540, 587, 642
Bsp13I	TCCGGA	1 cut(s)	613
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	24, 229, 444, 681
BspACI	CCGC	9 cut(s)	60, 139, 195, 223, 352, 383, 438, 462, 577
BspANI	GGCC	8 cut(s)	43, 53, 209, 437, 475, 585, 771, 819
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	153, 197
BspLI	GGNNCC	5 cut(s)	184, 185, 192, 537, 585
BspPI	GGATC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	535
BsrBI	CCGCTC	1 cut(s)	352
BsrFI	RCCGGY	2 cut(s)	290, 758
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	885
BssAI	RCCGGY	2 cut(s)	290, 758
BssECI	CCNNGG	7 cut(s)	186, 531, 572, 587, 645, 820, 832
BssMI	GATC	4 cut(s)	24, 229, 444, 681
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	3 cut(s)	645, 820, 832
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	486
BstAUI	TGTACA	1 cut(s)	753
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	594
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	360, 625, 831
BstFNI	CGCG	2 cut(s)	153, 197
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	4 cut(s)	27, 232, 447, 684
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	4 cut(s)	24, 229, 444, 681
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 276, 598
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	7 cut(s)	62, 90, 185, 186, 410, 518, 530
BstSLI	GKGCMC	2 cut(s)	540, 587
BstUI	CGCG	2 cut(s)	153, 197
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	771
BsuRI	GGCC	8 cut(s)	43, 53, 209, 437, 475, 585, 771, 819
BtsCI	GGATG	3 cut(s)	360, 625, 831
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	2 cut(s)	290, 758
Cfr13I	GGNCC	5 cut(s)	41, 52, 183, 583, 584
Cfr9I	CCCGGG	1 cut(s)	186
CseI	GACGC	3 cut(s)	159, 186, 475
Csp6I	GTAC	3 cut(s)	262, 313, 754
CspAI	ACCGGT	2 cut(s)	290, 758
CviAII	CATG	6 cut(s)	11, 328, 433, 593, 780, 862
CviQI	GTAC	3 cut(s)	262, 313, 754
DpnI	GATC	4 cut(s)	26, 231, 446, 683
DpnII	GATC	4 cut(s)	24, 229, 444, 681
EaeI	YGGCCR	3 cut(s)	435, 473, 769
EciI	GGCGGA	5 cut(s)	49, 128, 212, 451, 592
Eco130I	CCWWGG	3 cut(s)	645, 820, 832
Eco24I	GRGCYC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	183
Eco88I	CYCGRG	2 cut(s)	186, 586
Eco91I	GGTNACC	1 cut(s)	286
EcoO109I	RGGNCCY	2 cut(s)	183, 583
EcoO65I	GGTNACC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	3 cut(s)	645, 820, 832
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	3 cut(s)	645, 820, 832
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	6 cut(s)	14, 331, 436, 596, 783, 865
FaqI	GGGAC	2 cut(s)	196, 673
FatI	CATG	6 cut(s)	10, 327, 432, 592, 779, 861
FauI	CCCGC	2 cut(s)	202, 376
Fnu4HI	GCNGC	2 cut(s)	8, 438
FokI	GGATG	3 cut(s)	367, 632, 838
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	2 cut(s)	8, 438
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	8, 438
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	8 cut(s)	43, 53, 209, 437, 475, 585, 771, 819
HgaI	GACGC	3 cut(s)	159, 186, 475
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	6 cut(s)	14, 331, 436, 596, 783, 865
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	5 cut(s)	203, 245, 401, 664, 689
HphI	GGTGA	3 cut(s)	268, 280, 773
Hpy166II	GTNNAC	2 cut(s)	313, 756
Hpy188I	TCNGA	9 cut(s)	149, 202, 253, 573, 681, 694, 728, 745, 911
Hpy188III	TCNNGA	4 cut(s)	122, 405, 614, 895
Hpy8I	GTNNAC	2 cut(s)	313, 756
Hpy99I	CGWCG	4 cut(s)	49, 153, 202, 253
HpyAV	CCTTC	3 cut(s)	574, 628, 710
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	3 cut(s)	87, 260, 264
HpyCH4V	TGCA	2 cut(s)	494, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 276, 598
HpySE526I	ACGT	3 cut(s)	87, 260, 264
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	6 cut(s)	14, 331, 436, 596, 783, 865
HspAI	GCGC	1 cut(s)	98
KflI	GGGWCCC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	24, 229, 444, 681
LmnI	GCTCC	6 cut(s)	114, 141, 225, 349, 533, 637
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	595
MaeII	ACGT	3 cut(s)	87, 260, 264
MaeIII	GTNAC	2 cut(s)	256, 286
MalI	GATC	4 cut(s)	26, 231, 446, 683
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	4 cut(s)	24, 229, 444, 681
MboII	GAAGA	2 cut(s)	450, 776
MhlI	GDGCHC	3 cut(s)	540, 587, 642
MluCI	AATT	7 cut(s)	19, 30, 302, 448, 696, 813, 889
MlyI	GAGTC	3 cut(s)	197, 254, 683
MmeI	TCCRAC	5 cut(s)	172, 180, 231, 790, 832
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	1 cut(s)	786
MspR9I	CCNGG	7 cut(s)	64, 92, 187, 188, 412, 520, 532
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	2 cut(s)	153, 197
MwoI	GCNNNNNNNGC	3 cut(s)	59, 276, 598
NciI	CCSGG	6 cut(s)	92, 187, 188, 412, 520, 532
NdeII	GATC	4 cut(s)	24, 229, 444, 681
NlaIII	CATG	6 cut(s)	14, 331, 436, 596, 783, 865
NlaIV	GGNNCC	5 cut(s)	184, 185, 192, 537, 585
NmeAIII	GCCGAG	3 cut(s)	185, 251, 462
NmuCI	GTSAC	2 cut(s)	256, 286
NspI	RCATGY	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	3 cut(s)	257, 270, 875
PfeI	GAWTC	2 cut(s)	401, 664
Pfl23II	CGTACG	1 cut(s)	261
PinAI	ACCGGT	2 cut(s)	290, 758
PkrI	GCNGC	2 cut(s)	9, 439
PleI	GAGTC	3 cut(s)	197, 253, 683
PpsI	GAGTC	3 cut(s)	197, 253, 683
PpuMI	RGGWCCY	1 cut(s)	183
PshAI	GACNNNNGTC	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	62
PspLI	CGTACG	1 cut(s)	261
PspN4I	GGNNCC	5 cut(s)	184, 185, 192, 537, 585
PspOMI	GGGCCC	1 cut(s)	583
PspPI	GGNCC	5 cut(s)	41, 52, 183, 583, 584
PspPPI	RGGWCCY	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	692
RsaI	GTAC	3 cut(s)	263, 314, 755
RsaNI	GTAC	3 cut(s)	262, 313, 754
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	2 cut(s)	8, 438
Sau3AI	GATC	4 cut(s)	24, 229, 444, 681
Sau96I	GGNCC	5 cut(s)	41, 52, 183, 583, 584
SchI	GAGTC	3 cut(s)	197, 254, 683
ScrFI	CCNGG	7 cut(s)	64, 92, 187, 188, 412, 520, 532
SduI	GDGCHC	3 cut(s)	540, 587, 642
SfaNI	GCATC	1 cut(s)	595
SfuI	TTCGAA	1 cut(s)	69
SgrAI	CRCCGGYG	2 cut(s)	290, 758
SinI	GGWCC	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	7 cut(s)	19, 30, 302, 448, 696, 813, 889
SsiI	CCGC	9 cut(s)	60, 139, 195, 223, 352, 383, 438, 462, 577
StyD4I	CCNGG	7 cut(s)	62, 90, 185, 186, 410, 518, 530
StyI	CCWWGG	3 cut(s)	645, 820, 832
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	3 cut(s)	90, 263, 267
TaqI	TCGA	6 cut(s)	23, 69, 237, 404, 443, 603
TasI	AATT	7 cut(s)	19, 30, 302, 448, 696, 813, 889
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	2 cut(s)	401, 664
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TseFI	GTSAC	2 cut(s)	256, 286
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	2 cut(s)	256, 286
TspDTI	ATGAA	1 cut(s)	762
TspMI	CCCGGG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	3 cut(s)	19, 30, 302
XceI	RCATGY	1 cut(s)	596
XmaI	CCCGGG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.