Rorug01G0256700

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009790
Physical Location & Seq
Reverse (-)
36627288 .. 36636534
9247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0256700.1

Sequence Viewer

Length: 648 bp
ATGGTGCGAGGCAAAACCCAGATGAGGCGGATAGAGAACGCCACGAGCCGTCAAGTCACCTTCTCGAAGCGCCGAAGCGGTCTTCTGAAGAAGGCTTTCGAGCTCTCCATTCTCTGCGACGCTGAGGTTGCGCTCATCATCTTCTCTCCGAGAGGAAAGCTCTACGAATTCGCAAGCTCCAGCATGCAGACAACTATAGAACGTTATGAGAAGCATACAAAAGACAACCAAGCCAACAACAAATCTGTTGCCAGTGAACAAAATGTGCAGCAGCTCAAGCATGAAGCAACTAGCATGATGAAGCAGATAGAGCATCTTGAAGTTTCGAAACGGAAACTATTGGGAGAGAGTCTAGGACTATGCAGCATTGACGAACTGCAAGAAATAGAGCAACAGTTGGAGAGGAGTGTGAACAGCATTCGAGCAAGGAAGGCACAGGTTTACAAGGAACAGATTGAGCAATTGAGAGAAAAGGAAAGAGTCCTCACAGCTGAAAATCAGAGGCTAAATGAGAAGTGTGAGACTATGCAACCGAGGCAACCAGTAAGTGAGCAGAGAGAAAACTTAGCCTGCCCTGAAAGTAGTCCAAGTTCAGATGTTGAGACTGAATTGTTCATTGGACTGCCAGAAAGAAGATCGAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

215

Amino Acids

24.85

Weight (kDa)

8.86

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 6.4e-27 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 85 - 173 3.3e-25 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 78
AclI AACGTT 1 cut(s) 202
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
AluBI AGCT 5 cut(s) 103, 160, 177, 274, 491
AluI AGCT 5 cut(s) 103, 160, 177, 274, 491
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 515, 596
ApeKI GCWGC 3 cut(s) 268, 271, 363
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 72, 133
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 326
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 280, 283, 375
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 515, 596
BfaI CTAG 3 cut(s) 291, 353, 646
BfmI CTRYAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 3 cut(s) 269, 272, 364
BlsI GCNGC 3 cut(s) 270, 273, 365
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 533
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 252, 542
BseDI CCNNGG 1 cut(s) 533
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 252, 542
BseRI GAGGAG 1 cut(s) 418
BseXI GCAGC 3 cut(s) 280, 283, 375
BsgI GTGCAG 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 515, 596
BsmI GAATGC 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 635
BspACI CCGC 2 cut(s) 28, 78
BspCNI CTCAG 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 326
BsrI ACTGG 2 cut(s) 252, 542
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 1 cut(s) 635
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 175, 185, 571
BstDEI CTNAG 2 cut(s) 123, 565
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 133
BstKTI GATC 1 cut(s) 638
BstMAI GTCTC 2 cut(s) 515, 596
BstMBI GATC 1 cut(s) 635
BstMWI GCNNNNNNNGC 5 cut(s) 128, 277, 310, 431, 535
BstNSI RCATGY 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 280, 283, 375
BstV2I GAAGAC 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 175, 185, 571
CfoI GCGC 2 cut(s) 72, 133
CseI GACGC 1 cut(s) 128
CviAII CATG 3 cut(s) 184, 281, 295
DdeI CTNAG 2 cut(s) 123, 565
DpnI GATC 1 cut(s) 637
DpnII GATC 1 cut(s) 635
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 3 cut(s) 187, 284, 298
FaiI YATR 8 cut(s) 185, 197, 207, 216, 282, 296, 361, 527
FatI CATG 3 cut(s) 183, 280, 294
Fnu4HI GCNGC 3 cut(s) 269, 272, 364
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 269, 272, 364
FspBI CTAG 3 cut(s) 291, 353, 646
GlaI GCGC 2 cut(s) 71, 132
GluI GCNGC 3 cut(s) 269, 272, 364
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 73
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 72, 133
Hin1II CATG 3 cut(s) 187, 284, 298
Hin6I GCGC 2 cut(s) 70, 131
HinP1I GCGC 2 cut(s) 70, 131
HinfI GANTC 2 cut(s) 349, 480
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 3 cut(s) 257, 412, 442
Hpy188I TCNGA 4 cut(s) 87, 150, 501, 595
Hpy188III TCNNGA 2 cut(s) 64, 317
Hpy8I GTNNAC 3 cut(s) 257, 412, 442
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 70, 85, 424
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 5 cut(s) 187, 268, 363, 379, 529
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 277, 310, 431, 535
HpyF3I CTNAG 2 cut(s) 123, 565
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 3 cut(s) 187, 284, 298
HspAI GCGC 2 cut(s) 70, 131
Kzo9I GATC 1 cut(s) 635
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 32, 193, 265, 422, 555, 583, 588, 639
Lsp1109I GCAGC 3 cut(s) 280, 283, 375
LweI GCATC 1 cut(s) 322
MaeI CTAG 3 cut(s) 291, 353, 646
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 637
MboI GATC 1 cut(s) 635
MboII GAAGA 4 cut(s) 74, 100, 133, 645
MfeI CAATTG 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 167, 461, 608
MlyI GAGTC 2 cut(s) 358, 489
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 18, 118, 146, 396, 494, 495, 528
MroXI GAANNNNTTC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 491
MunI CAATTG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 5 cut(s) 128, 277, 310, 431, 535
NdeII GATC 1 cut(s) 635
NlaIII CATG 3 cut(s) 187, 284, 298
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 326
PaeI GCATGC 1 cut(s) 187
PctI GAATGC 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 270, 273, 365
PleI GAGTC 2 cut(s) 357, 488
PpsI GAGTC 2 cut(s) 357, 488
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PvuII CAGCTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 3 cut(s) 269, 272, 364
Sau3AI GATC 1 cut(s) 635
SchI GAGTC 2 cut(s) 358, 489
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 62, 105, 129, 162, 179, 205, 276, 441, 493
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 187
Sse9I AATT 3 cut(s) 167, 461, 608
SsiI CCGC 2 cut(s) 28, 78
SspMI CTAG 3 cut(s) 291, 353, 646
SstI GAGCTC 1 cut(s) 105
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 205
TaqI TCGA 5 cut(s) 65, 99, 326, 421, 638
TasI AATT 3 cut(s) 167, 461, 608
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 268, 271, 363
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 297, 314, 604
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 3 cut(s) 291, 353, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.