RLG00000028019

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
17771119 .. 17772976
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028019

Sequence Viewer

Length: 951 bp
ATGGAACCTCAGCATGACAAGGACGCGTCGTCCATGGCGGCCAAGATGAAGAGCGCCAATTCATACCAGATGCTGAACGGGCCGTCGCTGACGCACTCGGCCTGGTTCGAAATCCGGTTGTTCTACGTCCGGATCGCGCCTTGCGTCATCGACAGCGTGCCGGACCACCTCACGCTCTGCCACCTCCGCCGCGACATCGGCGTGTCTCTCGAGATCAACGGCGCCAGGATTCCGAACTCCGACTCGGCGTCGCTGACGCTCCGCCGCGACCGGCTGGACAAGGAGTCGTCGGAGGTGACGTACGTGGCCACCGACAGCGTGAGGGTCACCGGCGGGGTGGAGTTTGAGGTCTACGAGAACAATGACATGGTGCTGTGCGGGTCGTTGGAGAGGATGGAAGGCGTTTGGCTCAATGGGAATGCGGGGATGGAGAATGATTCCAAGACGGGTTGGAGTATGGATTGTTATATGGCTGCGTCTATTAATTCCGGCTCTTCGGCGTTTTTCCGGCCGAAACTCGGGGTTTCGGCGCCGTCTATAGAGGTTTATATCGCCGGGTGCTGCTCTGGTGTGCCGGTGATATTGACAAAGACGATACAGATTAGTCCCAGGCGGAAGTGCCCAAGGCACGCCACGCTGGATGCGATTCCCGAGGAGGAGGAGGTTGGGAAGGAGCATAGTAAGAGCTGTAATGGGTTAATTCGTCAGCGAAAAGTGCAGATGACAGAATCTGAAATTGATGAGTATGAATCAGATGGTAAAATTGGACATGGTTTCTACTCTGATGAAATGTACACTGGTGAAGATGGTCAACTCACATGGTTCAATGCTGGTGTTAGAGTTGGTGTTGGAATTGGTCTTGGGATGTGCCTTGGAATTGGTATTGGTGTTGGACTGCTCATGCGTTCCTATCAAGCGACCACTAGTAATTTCAGGAGGAGGTTTCTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

34.8

Weight (kDa)

5.59

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 529
AccI GTMKAC 1 cut(s) 351
AccII CGCG 4 cut(s) 26, 137, 192, 267
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 9 cut(s) 38, 187, 190, 262, 265, 333, 378, 422, 613
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 3 cut(s) 39, 306, 509
AcyI GRCGYC 3 cut(s) 222, 248, 530
AfaI GTAC 2 cut(s) 302, 794
AfiI CCNNNNNNNGG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 826
AhdI GACNNNNNGTC 3 cut(s) 28, 247, 283
AhlI ACTAGT 1 cut(s) 923
AjnI CCWGG 3 cut(s) 101, 224, 608
AluBI AGCT 1 cut(s) 687
AluI AGCT 1 cut(s) 687
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 2 cut(s) 73, 731
Ama87I CYCGRG 3 cut(s) 209, 518, 650
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 5 cut(s) 39, 80, 99, 306, 509
ApeKI GCWGC 2 cut(s) 473, 561
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 4 cut(s) 56, 139, 224, 532
AspS9I GGNCC 2 cut(s) 80, 163
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 4 cut(s) 307, 319, 589, 812
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 3 cut(s) 209, 518, 650
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 2 cut(s) 221, 529
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 460, 548
BccI CCATC 4 cut(s) 388, 421, 749, 800
BceAI ACGGC 3 cut(s) 67, 235, 517
BciT130I CCWGG 3 cut(s) 103, 226, 610
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 2 cut(s) 537, 947
BfoI RGCGCY 3 cut(s) 57, 225, 533
BisI GCNGC 5 cut(s) 39, 190, 265, 474, 562
BlsI GCNGC 5 cut(s) 40, 191, 266, 475, 563
Bme1390I CCNGG 4 cut(s) 103, 226, 556, 610
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 3 cut(s) 28, 247, 283
BmeT110I CYCGRG 3 cut(s) 209, 518, 650
BmgT120I GGNCC 2 cut(s) 80, 163
BmiI GGNNCC 3 cut(s) 6, 223, 531
BmrFI CCNGG 4 cut(s) 103, 226, 556, 610
BmsI GCATC 2 cut(s) 60, 631
Bpu10I CCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 3 cut(s) 222, 248, 530
BsaJI CCNNGG 5 cut(s) 33, 608, 623, 651, 871
BsaWI WCCGGW 2 cut(s) 114, 129
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse118I RCCGGY 3 cut(s) 270, 329, 574
Bse1I ACTGG 1 cut(s) 802
BseAI TCCGGA 1 cut(s) 129
BseBI CCWGG 3 cut(s) 103, 226, 610
BseDI CCNNGG 5 cut(s) 33, 608, 623, 651, 871
BseGI GGATG 4 cut(s) 399, 432, 646, 870
BseLI CCNNNNNNNGG 1 cut(s) 518
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 3 cut(s) 668, 671, 674
BseSI GKGCMC 1 cut(s) 623
BseX3I CGGCCG 1 cut(s) 509
BseXI GCAGC 2 cut(s) 460, 548
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 4 cut(s) 26, 137, 192, 267
Bsh1285I CGRYCG 2 cut(s) 271, 512
BshFI GGCC 5 cut(s) 41, 82, 101, 308, 511
BshNI GGYRCC 2 cut(s) 221, 529
BsiEI CGRYCG 2 cut(s) 271, 512
BsiHKCI CYCGRG 3 cut(s) 209, 518, 650
BsiSI CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 5 cut(s) 41, 82, 101, 308, 511
BsoBI CYCGRG 3 cut(s) 209, 518, 650
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 623
Bsp13I TCCGGA 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 2 cut(s) 132, 213
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 9 cut(s) 38, 187, 190, 262, 265, 333, 378, 422, 613
BspANI GGCC 5 cut(s) 41, 82, 101, 308, 511
BspCNI CTCAG 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 4 cut(s) 26, 137, 192, 267
BspLI GGNNCC 3 cut(s) 6, 223, 531
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 2 cut(s) 44, 499
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 221, 529
BsrFI RCCGGY 3 cut(s) 270, 329, 574
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 1 cut(s) 802
BssAI RCCGGY 3 cut(s) 270, 329, 574
BssECI CCNNGG 5 cut(s) 33, 608, 623, 651, 871
BssMI GATC 2 cut(s) 132, 213
BssNI GRCGYC 3 cut(s) 222, 248, 530
BssT1I CCWWGG 3 cut(s) 33, 623, 871
Bst2UI CCWGG 3 cut(s) 103, 226, 610
Bst6I CTCTTC 2 cut(s) 44, 499
BstACI GRCGYC 3 cut(s) 222, 248, 530
BstAUI TGTACA 1 cut(s) 792
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 158, 630
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 4 cut(s) 399, 432, 646, 870
BstFNI CGCG 4 cut(s) 26, 137, 192, 267
BstH2I RGCGCY 3 cut(s) 57, 225, 533
BstHHI GCGC 4 cut(s) 56, 139, 224, 532
BstKTI GATC 2 cut(s) 135, 216
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 132, 213
BstMCI CGRYCG 2 cut(s) 271, 512
BstMWI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
BstNI CCWGG 3 cut(s) 103, 226, 610
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 4 cut(s) 101, 224, 554, 608
BstSFI CTRYAG 2 cut(s) 537, 947
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 4 cut(s) 26, 137, 192, 267
BstV1I GCAGC 2 cut(s) 460, 548
BstZI CGGCCG 1 cut(s) 509
BsuRI GGCC 5 cut(s) 41, 82, 101, 308, 511
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 399, 432, 646, 870
BtsIMutI CAGTG 1 cut(s) 795
Cac8I GCNNGC 2 cut(s) 158, 630
CaiI CAGNNNCTG 2 cut(s) 73, 731
CfoI GCGC 4 cut(s) 56, 139, 224, 532
Cfr10I RCCGGY 3 cut(s) 270, 329, 574
Cfr13I GGNCC 2 cut(s) 80, 163
CseI GACGC 7 cut(s) 15, 32, 100, 133, 237, 265, 465
Csp6I GTAC 2 cut(s) 301, 793
CviAII CATG 6 cut(s) 14, 34, 367, 770, 819, 901
CviQI GTAC 2 cut(s) 301, 793
DdeI CTNAG 1 cut(s) 9
DinI GGCGCC 2 cut(s) 223, 531
DpnI GATC 2 cut(s) 134, 215
DpnII GATC 2 cut(s) 132, 213
DriI GACNNNNNGTC 3 cut(s) 28, 247, 283
EaeI YGGCCR 3 cut(s) 39, 306, 509
EagI CGGCCG 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 44, 499
Eam1105I GACNNNNNGTC 3 cut(s) 28, 247, 283
EarI CTCTTC 2 cut(s) 44, 499
EciI GGCGGA 3 cut(s) 176, 251, 628
EclXI CGGCCG 1 cut(s) 509
Eco130I CCWWGG 3 cut(s) 33, 623, 871
Eco47I GGWCC 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 509
Eco88I CYCGRG 3 cut(s) 209, 518, 650
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 101, 224, 608
EcoT14I CCWWGG 3 cut(s) 33, 623, 871
EgeI GGCGCC 2 cut(s) 223, 531
EheI GGCGCC 2 cut(s) 223, 531
ErhI CCWWGG 3 cut(s) 33, 623, 871
FaeI CATG 6 cut(s) 17, 37, 370, 773, 822, 904
FaqI GGGAC 1 cut(s) 591
FatI CATG 6 cut(s) 13, 33, 366, 769, 818, 900
FauI CCCGC 3 cut(s) 326, 371, 415
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 39, 190, 265, 474, 562
FokI GGATG 4 cut(s) 406, 439, 653, 877
Fsp4HI GCNGC 5 cut(s) 39, 190, 265, 474, 562
FspBI CTAG 1 cut(s) 924
GlaI GCGC 4 cut(s) 55, 138, 223, 531
GluI GCNGC 5 cut(s) 39, 190, 265, 474, 562
HaeII RGCGCY 3 cut(s) 57, 225, 533
HaeIII GGCC 5 cut(s) 41, 82, 101, 308, 511
HapII CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
HgaI GACGC 7 cut(s) 15, 32, 100, 133, 237, 265, 465
HhaI GCGC 4 cut(s) 56, 139, 224, 532
Hin1I GRCGYC 3 cut(s) 222, 248, 530
Hin1II CATG 6 cut(s) 17, 37, 370, 773, 822, 904
Hin6I GCGC 4 cut(s) 54, 137, 222, 530
HinP1I GCGC 4 cut(s) 54, 137, 222, 530
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HinfI GANTC 7 cut(s) 229, 242, 284, 437, 646, 728, 749
HpaII CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
HphI GGTGA 4 cut(s) 307, 319, 589, 812
Hpy166II GTNNAC 3 cut(s) 352, 795, 812
Hpy188I TCNGA 6 cut(s) 234, 241, 292, 733, 754, 784
Hpy188III TCNNGA 5 cut(s) 130, 209, 211, 650, 934
Hpy8I GTNNAC 3 cut(s) 352, 795, 812
Hpy99I CGWCG 4 cut(s) 31, 88, 253, 292
HpyAV CCTTC 2 cut(s) 392, 664
HpyCH4IV ACGT 3 cut(s) 126, 299, 303
HpyCH4V TGCA 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 3 cut(s) 126, 299, 303
Hsp92I GRCGYC 3 cut(s) 222, 248, 530
Hsp92II CATG 6 cut(s) 17, 37, 370, 773, 822, 904
HspAI GCGC 4 cut(s) 54, 137, 222, 530
KasI GGCGCC 2 cut(s) 221, 529
Kpn2I TCCGGA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 132, 213
LguI GCTCTTC 2 cut(s) 44, 499
LmnI GCTCC 2 cut(s) 264, 673
Lsp1109I GCAGC 2 cut(s) 460, 548
LweI GCATC 2 cut(s) 60, 631
MaeI CTAG 1 cut(s) 924
MaeII ACGT 3 cut(s) 126, 299, 303
MaeIII GTNAC 2 cut(s) 295, 325
MalI GATC 2 cut(s) 134, 215
MboI GATC 2 cut(s) 132, 213
MboII GAAGA 3 cut(s) 61, 486, 815
MhlI GDGCHC 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 8 cut(s) 58, 484, 699, 735, 762, 852, 876, 928
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 2 cut(s) 222, 530
MlyI GAGTC 2 cut(s) 236, 293
MmeI TCCRAC 6 cut(s) 264, 270, 366, 431, 829, 871
Mox20I TGGCCA 1 cut(s) 308
MroI TCCGGA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 483, 698
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
MspR9I CCNGG 4 cut(s) 103, 226, 556, 610
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 103, 226, 610
MvnI CGCG 4 cut(s) 26, 137, 192, 267
MwoI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
NarI GGCGCC 2 cut(s) 222, 530
NciI CCSGG 1 cut(s) 556
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 132, 213
NlaIII CATG 6 cut(s) 17, 37, 370, 773, 822, 904
NlaIV GGNNCC 3 cut(s) 6, 223, 531
NmeAIII GCCGAG 2 cut(s) 77, 224
NmuCI GTSAC 2 cut(s) 295, 325
NspV TTCGAA 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 209
PciSI GCTCTTC 2 cut(s) 44, 499
PcsI WCGNNNNNNNCGW 4 cut(s) 141, 296, 309, 641
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 5 cut(s) 229, 437, 646, 728, 749
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 5 cut(s) 40, 191, 266, 475, 563
PleI GAGTC 2 cut(s) 236, 292
PluTI GGCGCC 2 cut(s) 225, 533
PpsI GAGTC 2 cut(s) 236, 292
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 3 cut(s) 101, 224, 608
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 101, 224, 608
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 6, 223, 531
PspPI GGNCC 2 cut(s) 80, 163
PstNI CAGNNNCTG 2 cut(s) 73, 731
RsaI GTAC 2 cut(s) 302, 794
RsaNI GTAC 2 cut(s) 301, 793
RseI CAYNNNNRTG 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 44, 499
SaqAI TTAA 2 cut(s) 483, 698
SatI GCNGC 5 cut(s) 39, 190, 265, 474, 562
Sau3AI GATC 2 cut(s) 132, 213
Sau96I GGNCC 2 cut(s) 80, 163
SchI GAGTC 2 cut(s) 236, 293
ScrFI CCNGG 4 cut(s) 103, 226, 556, 610
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 2 cut(s) 60, 631
SfcI CTRYAG 2 cut(s) 537, 947
SfoI GGCGCC 2 cut(s) 223, 531
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SpeI ACTAGT 1 cut(s) 923
Sse9I AATT 8 cut(s) 58, 484, 699, 735, 762, 852, 876, 928
SsiI CCGC 9 cut(s) 38, 187, 190, 262, 265, 333, 378, 422, 613
SspDI GGCGCC 2 cut(s) 221, 529
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 101, 224, 554, 608
StyI CCWWGG 3 cut(s) 33, 623, 871
TaiI ACGT 3 cut(s) 129, 302, 306
TaqI TCGA 3 cut(s) 108, 150, 210
TasI AATT 8 cut(s) 58, 484, 699, 735, 762, 852, 876, 928
TatI WGTACW 1 cut(s) 792
TauI GCSGC 3 cut(s) 41, 192, 267
TfiI GAWTC 5 cut(s) 229, 437, 646, 728, 749
Tru1I TTAA 2 cut(s) 483, 698
Tru9I TTAA 2 cut(s) 483, 698
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 2 cut(s) 295, 325
TseI GCWGC 2 cut(s) 473, 561
Tsp45I GTSAC 2 cut(s) 295, 325
TspDTI ATGAA 4 cut(s) 51, 62, 762, 801
TspRI CASTG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.