Rorug01G0256800

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001355
Physical Location & Seq
Forward (+)
36659081 .. 36660868
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0256800.1

Sequence Viewer

Length: 1101 bp
ATGGAAAGGCCTTCATCTTACACATTTATCACAGACAAGCAAAAAGGTTTGGGGATGGCCATAACTGAATTATTTCCTGGGGCAGAACATAGACACTGTGTCCGACACCTATACAACAACTTTAAGGCCAAGCATCCGGGTGAAGGGCTGAAGAAACTAGTGTGGGATGCAGCTAGATCAAGCACCAGGGTTTGGTTCAATAAACACATGGATGAGATGAAAGGGTTGCATGATGAGGCATGGACTTGGTTTCAGGACAAGTCTCCAGAACAATGGAGTATGGCTTATTTTAGGGATGATTCAAGGTGTGACCTTTTGTTGCACAATCTTTGTGAGTCATTCAATACAGCAATCCTCCCAGCTAGGGACAAGCCTATTATAACAATGTTGGAGAAGATAAGGATGGATATGATGGTAAGGATGGCAAACAGAAGAGTGGCAGATCAAAGATGGACTGATATGGTTGGTCCAAGGATTAGGAAGATATTAGAGAAGGTGGCAGAAAGGAGCAGCTGTTATAGAGCTTATCACTCTGGTGAATTTGAGTTCCAAATAACTGGAGGGGGAGATAATGGCAGCAAGCATACAGTGGACCTAAGGCTTCACAGTTGCACATGTAGGAGGTGGCAGATAAGTGGAATACCATGTGTCCATGCCATTTGTGCCATCAGAAGCAAAAAGGCAGACCCTGCTCTTTTTTGTGATGATTACTTGATGCCAAGTACTTATATGGAATCCTATAATCCCATTATTCATCATATTGTTGGTGAGGATGATTGGGACCAAGTGGACTACCTTATAGCACCTCCCCCATATAAGAAGCAAGCCGGCAGACCAAAAATGAAGAGAACCAAGGAGCCCGATGAGAAGAAACAGCTTCTACCAGCCCCAATTGATAAATCAAAGATGACAAGAACCTACACAAAGATGACATGCCAAGTCTGCTTCAAAAAAGGCCATAACAGGTTGGGTTGCCCAATCACAAAGGCCAAAAAAGCAGCAGCTGCACAACAAGGAGGGGAAGGGAGTTCCATTGCACCCCAGCAAACTAAGAAGAGACAAAGGCAGCAGTTCAAGGTTCAAATGGCAATGGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

366

Amino Acids

42.23

Weight (kDa)

9.46

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 4 - 40 3e-06 MULE transposase domain
SWIM PF04434 195 - 223 2.4e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 1093
AccB7I CCANNNNNTGG 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 724
AfiI CCNNNNNNNGG 3 cut(s) 143, 192, 364
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 6 cut(s) 199, 303, 343, 949, 1075, 1082
AhdI GACNNNNNGTC 1 cut(s) 98
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 2 cut(s) 76, 185
AleI CACNNNNGTG 1 cut(s) 534
AluBI AGCT 6 cut(s) 173, 362, 513, 524, 877, 1004
AluI AGCT 6 cut(s) 173, 362, 513, 524, 877, 1004
Alw26I GTCTC 2 cut(s) 267, 1051
AlwNI CAGNNNCTG 2 cut(s) 689, 1004
AoxI GGCC 5 cut(s) 8, 57, 126, 955, 987
ApeKI GCWGC 7 cut(s) 170, 510, 576, 998, 1001, 1004, 1066
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 467, 592, 781
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 152, 548, 779
AvaII GGWCC 3 cut(s) 467, 592, 781
AxyI CCTNAGG 1 cut(s) 596
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 861
BbvI GCAGC 7 cut(s) 182, 522, 588, 991, 1010, 1013, 1078
BccI CCATC 6 cut(s) 49, 397, 406, 415, 444, 674
BciT130I CCWGG 2 cut(s) 78, 187
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 267, 1051
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 174, 363
BisI GCNGC 7 cut(s) 171, 511, 577, 999, 1002, 1005, 1067
BlsI GCNGC 7 cut(s) 172, 512, 578, 1000, 1003, 1006, 1068
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 3 cut(s) 78, 138, 187
Bme18I GGWCC 3 cut(s) 467, 592, 781
BmeRI GACNNNNNGTC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 467, 592, 781
BmiI GGNNCC 3 cut(s) 782, 858, 1095
BmrFI CCNGG 3 cut(s) 78, 138, 187
BmsI GCATC 3 cut(s) 142, 157, 705
BpmI CTGGAG 2 cut(s) 249, 579
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 77, 186, 470, 852
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 192, 364
Bse118I RCCGGY 1 cut(s) 827
Bse1I ACTGG 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 596
Bse3DI GCAATG 2 cut(s) 1032, 1095
BseBI CCWGG 2 cut(s) 78, 187
BseDI CCNNGG 4 cut(s) 77, 186, 470, 852
BseGI GGATG 8 cut(s) 60, 133, 172, 217, 301, 408, 426, 778
BseLI CCNNNNNNNGG 3 cut(s) 143, 192, 364
BseMI GCAATG 2 cut(s) 1032, 1095
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 7 cut(s) 182, 522, 588, 991, 1010, 1013, 1078
BseYI CCCAGC 2 cut(s) 358, 1041
BsgI GTGCAG 1 cut(s) 990
BshFI GGCC 5 cut(s) 10, 59, 128, 957, 989
BshNI GGYRCC 1 cut(s) 1093
BsiSI CCGG 2 cut(s) 137, 828
BslFI GGGAC 2 cut(s) 380, 794
BslI CCNNNNNNNGG 3 cut(s) 143, 192, 364
BsmAI GTCTC 2 cut(s) 267, 1051
BsmFI GGGAC 2 cut(s) 380, 794
BsnI GGCC 5 cut(s) 10, 59, 128, 957, 989
Bsp1286I GDGCHC 1 cut(s) 861
Bsp143I GATC 2 cut(s) 176, 442
BspANI GGCC 5 cut(s) 10, 59, 128, 957, 989
BspLI GGNNCC 3 cut(s) 782, 858, 1095
BspT107I GGYRCC 1 cut(s) 1093
BsrDI GCAATG 2 cut(s) 1032, 1095
BsrFI RCCGGY 1 cut(s) 827
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 4 cut(s) 77, 186, 470, 852
BssMI GATC 2 cut(s) 176, 442
BssT1I CCWWGG 2 cut(s) 470, 852
Bst2UI CCWGG 2 cut(s) 78, 187
Bst4CI ACNGT 3 cut(s) 98, 589, 608
Bst6I CTCTTC 3 cut(s) 427, 839, 1049
BstAPI GCANNNNNTGC 2 cut(s) 689, 1004
BstC8I GCNNGC 3 cut(s) 581, 825, 829
BstDEI CTNAG 2 cut(s) 596, 1050
BstF5I GGATG 8 cut(s) 60, 133, 172, 217, 301, 408, 426, 778
BstKTI GATC 2 cut(s) 179, 445
BstMAI GTCTC 2 cut(s) 267, 1051
BstMBI GATC 2 cut(s) 176, 442
BstMWI GCNNNNNNNGC 5 cut(s) 662, 689, 942, 995, 1004
BstNI CCWGG 2 cut(s) 78, 187
BstNSI RCATGY 2 cut(s) 618, 936
BstSCI CCNGG 3 cut(s) 76, 136, 185
BstV1I GCAGC 7 cut(s) 182, 522, 588, 991, 1010, 1013, 1078
BstXI CCANNNNNNTGG 2 cut(s) 273, 557
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 5 cut(s) 10, 59, 128, 957, 989
BtsCI GGATG 8 cut(s) 60, 133, 172, 217, 301, 408, 426, 778
BtsIMutI CAGTG 2 cut(s) 94, 594
Cac8I GCNNGC 3 cut(s) 581, 825, 829
CaiI CAGNNNCTG 2 cut(s) 689, 1004
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 3 cut(s) 467, 592, 781
Csp6I GTAC 1 cut(s) 723
CviAII CATG 7 cut(s) 208, 230, 240, 615, 645, 653, 933
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 2 cut(s) 596, 1050
DpnI GATC 2 cut(s) 178, 444
DpnII GATC 2 cut(s) 176, 442
DriI GACNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 3 cut(s) 427, 839, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 98
EarI CTCTTC 3 cut(s) 427, 839, 1049
Eco130I CCWWGG 2 cut(s) 470, 852
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 3 cut(s) 467, 592, 781
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 76, 185
EcoT14I CCWWGG 2 cut(s) 470, 852
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 470, 852
FaeI CATG 7 cut(s) 211, 233, 243, 618, 648, 656, 936
FaqI GGGAC 2 cut(s) 380, 794
FatI CATG 7 cut(s) 207, 229, 239, 614, 644, 652, 932
Fnu4HI GCNGC 7 cut(s) 171, 511, 577, 999, 1002, 1005, 1067
FokI GGATG 8 cut(s) 67, 120, 179, 224, 308, 415, 433, 785
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 7 cut(s) 171, 511, 577, 999, 1002, 1005, 1067
FspBI CTAG 3 cut(s) 158, 174, 363
GluI GCNGC 7 cut(s) 171, 511, 577, 999, 1002, 1005, 1067
GsaI CCCAGC 2 cut(s) 362, 1045
GsuI CTGGAG 2 cut(s) 249, 579
HaeIII GGCC 5 cut(s) 10, 59, 128, 957, 989
HapII CCGG 2 cut(s) 137, 828
Hin1II CATG 7 cut(s) 211, 233, 243, 618, 648, 656, 936
HinfI GANTC 3 cut(s) 299, 335, 734
HpaII CCGG 2 cut(s) 137, 828
HphI GGTGA 3 cut(s) 152, 548, 779
Hpy166II GTNNAC 2 cut(s) 592, 790
Hpy188I TCNGA 2 cut(s) 104, 671
Hpy188III TCNNGA 2 cut(s) 254, 266
Hpy8I GTNNAC 2 cut(s) 592, 790
HpyAV CCTTC 4 cut(s) 21, 137, 487, 1016
HpyCH4III ACNGT 3 cut(s) 98, 589, 608
HpyCH4V TGCA 6 cut(s) 170, 229, 322, 612, 1007, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 689, 942, 995, 1004
HpyF3I CTNAG 2 cut(s) 596, 1050
Hsp92II CATG 7 cut(s) 211, 233, 243, 618, 648, 656, 936
KroI GCCGGC 1 cut(s) 827
KroNI GCCGGC 1 cut(s) 829
Kzo9I GATC 2 cut(s) 176, 442
LmnI GCTCC 2 cut(s) 507, 856
Lsp1109I GCAGC 7 cut(s) 182, 522, 588, 991, 1010, 1013, 1078
LweI GCATC 3 cut(s) 142, 157, 705
MaeI CTAG 3 cut(s) 158, 174, 363
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 178, 444
MboI GATC 2 cut(s) 176, 442
MboII GAAGA 7 cut(s) 163, 406, 444, 493, 856, 880, 1066
MfeI CAATTG 1 cut(s) 891
MhlI GDGCHC 1 cut(s) 861
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 68, 539, 891
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 127, 369
MnlI CCTC 7 cut(s) 229, 365, 554, 615, 763, 816, 1010
Mox20I TGGCCA 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 827
MroXI GAANNNNTTC 1 cut(s) 72
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 4 cut(s) 138, 210, 534, 926
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 513, 1004
MspI CCGG 2 cut(s) 137, 828
MspR9I CCNGG 3 cut(s) 78, 138, 187
MunI CAATTG 1 cut(s) 891
MvaI CCWGG 2 cut(s) 78, 187
MwoI GCNNNNNNNGC 5 cut(s) 662, 689, 942, 995, 1004
NaeI GCCGGC 1 cut(s) 829
NciI CCSGG 1 cut(s) 138
NdeII GATC 2 cut(s) 176, 442
NgoMIV GCCGGC 1 cut(s) 827
NlaIII CATG 7 cut(s) 211, 233, 243, 618, 648, 656, 936
NlaIV GGNNCC 3 cut(s) 782, 858, 1095
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 2 cut(s) 618, 936
OliI CACNNNNGTG 1 cut(s) 534
PceI AGGCCT 1 cut(s) 10
PciI ACATGT 1 cut(s) 614
PdiI GCCGGC 1 cut(s) 829
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 299, 734
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 7 cut(s) 172, 512, 578, 1000, 1003, 1006, 1068
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PscI ACATGT 1 cut(s) 614
PsiI TTATAA 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 76, 185
PspFI CCCAGC 2 cut(s) 358, 1041
PspGI CCWGG 2 cut(s) 76, 185
PspN4I GGNNCC 3 cut(s) 782, 858, 1095
PspPI GGNCC 3 cut(s) 467, 592, 781
PstNI CAGNNNCTG 2 cut(s) 689, 1004
PvuII CAGCTG 2 cut(s) 513, 1004
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
RseI CAYNNNNRTG 4 cut(s) 138, 210, 534, 926
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 7 cut(s) 171, 511, 577, 999, 1002, 1005, 1067
Sau3AI GATC 2 cut(s) 176, 442
Sau96I GGNCC 3 cut(s) 467, 592, 781
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 78, 138, 187
SduI GDGCHC 1 cut(s) 861
SfaNI GCATC 3 cut(s) 142, 157, 705
SinI GGWCC 3 cut(s) 467, 592, 781
SmiMI CAYNNNNRTG 4 cut(s) 138, 210, 534, 926
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 3 cut(s) 68, 539, 891
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 3 cut(s) 158, 174, 363
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 76, 136, 185
StyI CCWWGG 2 cut(s) 470, 852
TaaI ACNGT 3 cut(s) 98, 589, 608
TasI AATT 3 cut(s) 68, 539, 891
TatI WGTACW 1 cut(s) 722
TfiI GAWTC 2 cut(s) 299, 734
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 2 cut(s) 101, 594
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 7 cut(s) 170, 510, 576, 998, 1001, 1004, 1066
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 233, 743, 857
TspRI CASTG 2 cut(s) 101, 594
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 3 cut(s) 467, 592, 781
XapI RAATTY 1 cut(s) 539
XceI RCATGY 2 cut(s) 618, 936
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 3 cut(s) 158, 174, 363
ZrmI AGTACT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.