Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001355

Physical Location & Seq

Genomic Coordinates Reverse (-)

50100000 .. 50129557

Gene Structure 29558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATGTATGGAGCATTTCTTGTAAACACGGGTAGCAGTCAGCTGTTGGATGATTGTTTTGTGAAACCGCTTTTGATTTATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCTCAATGTATTGATACTTCCGCACAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGCAGAAAGCAATATCCGTATTGCAAACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGTCTCCTAGCCAGCAAGGTTCGAGTTTGTCTCAAAATTCAACTACTCGGTCTGATGGAAGACGAAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

170

Amino Acids

18.86

Weight (kDa)

4.3

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01510
fragaria_vesca	FvH4_7g15180 FvH4_7g15180
malus_domestica	MD01G1070100.v1.1 MD07G1132400.v1.1
prunus_persica	Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1
pyrus_communis	pycom01g09930 pycom07g12920
rosa_chinensis	RchiOBHm_Chr1g0356181 RchiOBHm_Chr1g0357601 RchiOBHm_Chr1g0357901 RchiOBHm_Chr1g0357951 RchiOBHm_Chr1g0357961 RchiOBHm_Chr1g0358001 RchiOBHm_Chr1g0358011 RchiOBHm_Chr1g0358061 RchiOBHm_Chr1g0358071 RchiOBHm_Chr1g0358081 RchiOBHm_Chr1g0358101 RchiOBHm_Chr1g0358111 RchiOBHm_Chr1g0358151 RchiOBHm_Chr1g0358161 RchiOBHm_Chr5g0017371
rosa_laevigata	RLG00000027986 RLG00000028016 RLG00000028017 RLG00000028018
rosa_multiflora	Rmu_co8139580.1_g000001 Rmu_sc0005812.1_g000010 Rmu_sc0007849.1_g000010 Rmu_sc0010521.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298390 Rroxscaffold_4G00298410
rosa_rugosa	Rorug01G0256800
rosa_samantha	Rh1AG147500 Rh1AG271100 Rh1AG273300 Rh1BG237900 Rh1CG138900 Rh1CG254800 Rh1DG265900 Rh1DG269100 Rh1DG269300 Rh1DG269400 Rh4CG143200 Rh5BG417100 Rh5CG441600 Rh6BG411700
rosa_wichuraiana	Rw1G024130 Rw1G024150 Rw1G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	68, 122, 173
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	480
AluBI	AGCT	4 cut(s)	43, 92, 361, 411
AluI	AGCT	4 cut(s)	43, 92, 361, 411
Alw26I	GTCTC	2 cut(s)	447, 474
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	323
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
BbsI	GAAGAC	1 cut(s)	505
BccI	CCATC	4 cut(s)	101, 124, 248, 488
BcoDI	GTCTC	2 cut(s)	447, 474
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	505
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
BpmI	CTGGAG	2 cut(s)	227, 359
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	131
BseGI	GGATG	4 cut(s)	55, 112, 135, 295
BseMI	GCAATG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	447, 474
BsnI	GGCC	1 cut(s)	121
BspACI	CCGC	3 cut(s)	68, 122, 173
BspANI	GGCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	55, 112, 135, 295
BstMAI	GTCTC	2 cut(s)	447, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	505
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	4 cut(s)	55, 112, 135, 295
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	2 cut(s)	138, 395
CviJI	RGCY	7 cut(s)	43, 92, 121, 205, 361, 411, 450
CviKI_1	RGCY	7 cut(s)	43, 92, 121, 205, 361, 411, 450
Eco57I	CTGAAG	1 cut(s)	135
FaeI	CATG	2 cut(s)	141, 398
FaiI	YATR	6 cut(s)	9, 81, 139, 189, 202, 396
FatI	CATG	2 cut(s)	137, 394
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	4 cut(s)	62, 119, 142, 302
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	96
GsuI	CTGGAG	2 cut(s)	227, 359
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	141, 398
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	283, 331, 493
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	182, 238, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	141, 398
LmnI	GCTCC	3 cut(s)	11, 340, 416
LpnPI	CCDG	6 cut(s)	78, 191, 323, 417, 428, 464
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	447
MboII	GAAGA	3 cut(s)	206, 238, 510
MluCI	AATT	2 cut(s)	377, 475
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	280, 286, 289, 337
MseI	TTAA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	141, 398
PkrI	GCNGC	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	6 cut(s)	45, 94, 313, 363, 413, 460
SfaNI	GCATC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	377, 475
SsiI	CCGC	3 cut(s)	68, 122, 173
SspMI	CTAG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	461
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	2 cut(s)	377, 475
TauI	GCSGC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	330, 336
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	1 cut(s)	475
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.