RchiOBHm_Chr1g0357901

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50127600 .. 50129483
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58310

Sequence Viewer

Length: 861 bp
ATGAATAATCGGTTGAGTCTAATAAGCCTTGAGCTGGAGCGAGTTCTGGTTAGTGTTTTATCTTACTACAAGGAGCAGTGCCGGGGCTTGGTTTTGGGGATTATCGGTAGATCTGCGGCGGCGAGGTCTATGGTTACTAGGAGATTGGCCTTCAAGATCAGTGTGCTGTTTTTTGATGTAGAGGTGAACGGAAAAGTGAGTAAGTCTTATGGCTTTCCTTCTGCTGCCCGAAAGATGGATACTCTAAATGACTTACTTGCTGCGAGTGACCTCATTTCACTTCACTGTCCTCTGACAAATGAAACAATTCAGATTCTGAATGCTGAATGTTTACAGCACGTAAAGGCTGGTATATTTATCTTCCATCTTGGTCCTTGTTTAAGGAACATATTTGGTTCTTTCTTCTTCTTTTTTCTTTTGATTGATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCCCAATGTATTGATACTTCCGCACAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGAAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGTAACCAATCAATCCAAAGAGTCTCCTAGCCAGCAAGGTTCGGGTTTATCTCAAAATTCAACTACTCGGTCTGATGGAAGACGAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

286

Amino Acids

31.79

Weight (kDa)

5.08

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 23 - 176 2.3e-16 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 116, 119, 467, 518
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 2 cut(s) 480, 704
AfiI CCNNNNNNNGG 3 cut(s) 34, 88, 235
AgsI TTSAA 2 cut(s) 154, 828
AluBI AGCT 4 cut(s) 34, 437, 706, 756
AluI AGCT 4 cut(s) 34, 437, 706, 756
Alw26I GTCTC 1 cut(s) 795
AlwNI CAGNNNCTG 1 cut(s) 316
AoxI GGCC 2 cut(s) 147, 464
ApeKI GCWGC 2 cut(s) 224, 260
ApoI RAATTY 1 cut(s) 823
Asp700I GAANNNNTTC 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 371, 464
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 196, 668
AvaII GGWCC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbsI GAAGAC 1 cut(s) 853
BbvI GCAGC 2 cut(s) 211, 247
BccI CCATC 7 cut(s) 229, 372, 419, 446, 469, 593, 836
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 2 cut(s) 138, 795
BfuI GTATCC 1 cut(s) 232
BglII AGATCT 1 cut(s) 110
BisI GCNGC 5 cut(s) 117, 120, 225, 261, 467
BlsI GCNGC 5 cut(s) 118, 121, 226, 262, 468
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 371, 464
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 853
BpmI CTGGAG 2 cut(s) 56, 572
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 88, 235
Bse3DI GCAATG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 457, 480, 640
BseLI CCNNNNNNNGG 3 cut(s) 34, 88, 235
BseMI GCAATG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 211, 247
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 2 cut(s) 149, 466
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 34, 88, 235
BsmAI GTCTC 1 cut(s) 795
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 149, 466
Bsp143I GATC 2 cut(s) 110, 156
BspACI CCGC 4 cut(s) 116, 119, 467, 518
BspANI GGCC 2 cut(s) 149, 466
BsrDI GCAATG 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 110, 156
Bst4CI ACNGT 2 cut(s) 287, 524
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 800
BstF5I GGATG 3 cut(s) 457, 480, 640
BstKTI GATC 2 cut(s) 113, 159
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 2 cut(s) 110, 156
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 211, 247
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 2 cut(s) 149, 466
BtsCI GGATG 3 cut(s) 457, 480, 640
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 4 cut(s) 83, 166, 283, 529
Cac8I GCNNGC 1 cut(s) 800
CaiI CAGNNNCTG 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 371, 464
CviAII CATG 2 cut(s) 483, 740
DpnI GATC 2 cut(s) 112, 158
DpnII GATC 2 cut(s) 110, 156
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 480, 704
FaeI CATG 2 cut(s) 486, 743
FaiI YATR 8 cut(s) 131, 210, 353, 389, 484, 534, 547, 741
FatI CATG 2 cut(s) 482, 739
Fnu4HI GCNGC 5 cut(s) 117, 120, 225, 261, 467
FokI GGATG 3 cut(s) 464, 487, 647
Fsp4HI GCNGC 5 cut(s) 117, 120, 225, 261, 467
FspBI CTAG 2 cut(s) 138, 795
GluI GCNGC 5 cut(s) 117, 120, 225, 261, 467
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 56, 572
HaeIII GGCC 2 cut(s) 149, 466
HapII CCGG 1 cut(s) 82
Hin1II CATG 2 cut(s) 486, 743
HinfI GANTC 3 cut(s) 16, 313, 788
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 196, 668
Hpy166II GTNNAC 2 cut(s) 187, 332
Hpy188I TCNGA 6 cut(s) 294, 312, 318, 628, 676, 841
Hpy188III TCNNGA 2 cut(s) 154, 749
Hpy8I GTNNAC 2 cut(s) 187, 332
HpyAV CCTTC 3 cut(s) 160, 228, 455
HpyCH4III ACNGT 2 cut(s) 287, 524
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 527, 583, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 2 cut(s) 486, 743
Kzo9I GATC 2 cut(s) 110, 156
LmnI GCTCC 3 cut(s) 37, 73, 761
LpnPI CCDG 9 cut(s) 20, 32, 95, 333, 423, 536, 762, 773, 812
Lsp1109I GCAGC 2 cut(s) 211, 247
LweI GCATC 1 cut(s) 486
MaeI CTAG 2 cut(s) 138, 795
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 133, 266, 769
MalI GATC 2 cut(s) 112, 158
MboI GATC 2 cut(s) 110, 156
MboII GAAGA 6 cut(s) 352, 394, 397, 551, 583, 858
MflI RGATCY 1 cut(s) 110
MluCI AATT 3 cut(s) 306, 722, 823
MlyI GAGTC 2 cut(s) 25, 797
MnlI CCTC 8 cut(s) 117, 175, 281, 300, 625, 631, 634, 682
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 2 cut(s) 380, 725
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 110, 156
NlaIII CATG 2 cut(s) 486, 743
NmuCI GTSAC 1 cut(s) 266
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 5 cut(s) 118, 121, 226, 262, 468
PleI GAGTC 2 cut(s) 24, 796
PpsI GAGTC 2 cut(s) 24, 796
Ppu21I YACGTR 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 371, 464
PstNI CAGNNNCTG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 2 cut(s) 380, 725
SatI GCNGC 5 cut(s) 117, 120, 225, 261, 467
Sau3AI GATC 2 cut(s) 110, 156
Sau96I GGNCC 2 cut(s) 371, 464
SchI GAGTC 2 cut(s) 25, 797
ScrFI CCNGG 1 cut(s) 83
SfaNI GCATC 1 cut(s) 486
SinI GGWCC 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 306, 722, 823
SsiI CCGC 4 cut(s) 116, 119, 467, 518
SspMI CTAG 2 cut(s) 138, 795
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 287, 524
TaiI ACGT 1 cut(s) 342
TaqII GACCGA 1 cut(s) 825
TasI AATT 3 cut(s) 306, 722, 823
TauI GCSGC 3 cut(s) 119, 122, 469
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 380, 725
Tru9I TTAA 2 cut(s) 380, 725
TscAI CASTG 4 cut(s) 83, 166, 290, 529
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 224, 260
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 4 cut(s) 17, 315, 675, 681
TspGWI ACGGA 2 cut(s) 204, 565
TspRI CASTG 4 cut(s) 83, 166, 290, 529
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 138, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.