RchiOBHm_Chr1g0357951

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50170338 .. 50171290
953 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58315

Sequence Viewer

Length: 612 bp
ATGAGTGGCACAGATCAAGCGTTTAGTTCCAGTTCTTGGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACACCTATAGAATCAATGCAAGAGTCGCCTTCCGACCAGCTTCTAAAATCCAGAAAGAGGCTGAGTGGAAAGCGTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCCGGTCTTCATGTTGCAAGGCAAAGAGTTAAAGGTAGTGATTGGTTCCTAGATACCATGTCAAATGTAATGAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAATGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGTTATGTACCTTTACTTTGTTGCATATGCTTCCATGTTCTGTCACTGCAATACAAATGCACAGTAAGAGTAATGGTCTCCTCCCCCTCCCCTCCCGAAACTTTAGACATGTCAACAAAGATAGATCACTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

9.64

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 36
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 2 cut(s) 36, 129
AflIII ACRYGT 1 cut(s) 583
AluBI AGCT 3 cut(s) 112, 179, 287
AluI AGCT 3 cut(s) 112, 179, 287
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 284, 341
ApoI RAATTY 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BbsI GAAGAC 2 cut(s) 60, 197
BbvI GCAGC 2 cut(s) 296, 328
BccI CCATC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 3 cut(s) 78, 282, 463
BisI GCNGC 2 cut(s) 285, 342
BlsI GCNGC 2 cut(s) 286, 343
Bme1390I CCNGG 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 201
BpiI GAAGAC 2 cut(s) 60, 197
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 129
Bse1I ACTGG 2 cut(s) 30, 609
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 169, 429
BseLI CCNNNNNNNGG 2 cut(s) 36, 129
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 125, 302
BseNI ACTGG 2 cut(s) 30, 609
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 2 cut(s) 296, 328
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 36, 129
BsmAI GTCTC 1 cut(s) 557
Bso31I GGTCTC 1 cut(s) 557
Bsp143I GATC 4 cut(s) 13, 277, 332, 599
BspCNI CTCAG 2 cut(s) 126, 301
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 2 cut(s) 30, 609
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 4 cut(s) 13, 277, 332, 599
Bst4CI ACNGT 5 cut(s) 156, 401, 464, 477, 539
BstDEI CTNAG 2 cut(s) 134, 288
BstF5I GGATG 2 cut(s) 169, 429
BstKTI GATC 4 cut(s) 16, 280, 335, 602
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 4 cut(s) 13, 277, 332, 599
BstMWI GCNNNNNNNGC 2 cut(s) 97, 185
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 3 cut(s) 78, 282, 463
BstV1I GCAGC 2 cut(s) 296, 328
BstV2I GAAGAC 2 cut(s) 60, 197
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BtsCI GGATG 2 cut(s) 169, 429
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 3 cut(s) 473, 519, 602
Csp6I GTAC 1 cut(s) 483
CviAII CATG 4 cut(s) 209, 256, 510, 584
CviJI RGCY 6 cut(s) 112, 133, 168, 179, 287, 454
CviKI_1 RGCY 6 cut(s) 112, 133, 168, 179, 287, 454
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 2 cut(s) 134, 288
DpnI GATC 4 cut(s) 15, 279, 334, 601
DpnII GATC 4 cut(s) 13, 277, 332, 599
Eco31I GGTCTC 1 cut(s) 557
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 196
FaeI CATG 4 cut(s) 212, 259, 513, 587
FatI CATG 4 cut(s) 208, 255, 509, 583
FauNDI CATATG 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 285, 342
FokI GGATG 2 cut(s) 176, 436
Fsp4HI GCNGC 2 cut(s) 285, 342
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 285, 342
HapII CCGG 1 cut(s) 201
Hin1II CATG 4 cut(s) 212, 259, 513, 587
HincII GTYRAC 2 cut(s) 460, 589
HindII GTYRAC 2 cut(s) 460, 589
HinfI GANTC 3 cut(s) 56, 83, 95
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 152, 460, 589
Hpy188I TCNGA 2 cut(s) 106, 308
Hpy188III TCNNGA 4 cut(s) 60, 123, 440, 570
Hpy8I GTNNAC 3 cut(s) 152, 460, 589
HpyAV CCTTC 2 cut(s) 111, 425
HpyCH4III ACNGT 5 cut(s) 156, 401, 464, 477, 539
HpyCH4V TGCA 8 cut(s) 91, 188, 215, 284, 361, 499, 524, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 185
HpyF3I CTNAG 2 cut(s) 134, 288
Hsp92II CATG 4 cut(s) 212, 259, 513, 587
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 4 cut(s) 13, 277, 332, 599
Lsp1109I GCAGC 2 cut(s) 296, 328
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 395, 517
MalI GATC 4 cut(s) 15, 279, 334, 601
MboI GATC 4 cut(s) 13, 277, 332, 599
MboII GAAGA 3 cut(s) 65, 197, 384
MflI RGATCY 1 cut(s) 277
MluCI AATT 1 cut(s) 380
MlyI GAGTC 2 cut(s) 50, 104
MmeI TCCRAC 3 cut(s) 129, 401, 408
MnlI CCTC 5 cut(s) 123, 305, 566, 572, 577
MseI TTAA 3 cut(s) 158, 228, 459
MslI CAYNNNNRTG 1 cut(s) 478
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 97, 185
NciI CCSGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 501
NdeII GATC 4 cut(s) 13, 277, 332, 599
NlaIII CATG 4 cut(s) 212, 259, 513, 587
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 2 cut(s) 395, 517
NspI RCATGY 1 cut(s) 587
PciI ACATGT 1 cut(s) 583
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 2 cut(s) 286, 343
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
PscI ACATGT 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 245
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 478
SaqAI TTAA 3 cut(s) 158, 228, 459
SatI GCNGC 2 cut(s) 285, 342
Sau3AI GATC 4 cut(s) 13, 277, 332, 599
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 1 cut(s) 201
SetI ASST 7 cut(s) 79, 114, 181, 235, 289, 436, 488
SfcI CTRYAG 3 cut(s) 78, 282, 463
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 380
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 5 cut(s) 156, 401, 464, 477, 539
TasI AATT 1 cut(s) 380
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 158, 228, 459
Tru9I TTAA 3 cut(s) 158, 228, 459
TscAI CASTG 3 cut(s) 480, 526, 609
TseFI GTSAC 2 cut(s) 395, 517
TseI GCWGC 2 cut(s) 284, 341
Tsp45I GTSAC 2 cut(s) 395, 517
TspDTI ATGAA 2 cut(s) 197, 284
TspRI CASTG 3 cut(s) 480, 526, 609
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 587
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.