Rh1CG138900

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001355
Physical Location & Seq
Reverse (-)
30352683 .. 30353869
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG138900.1

Sequence Viewer

Length: 510 bp
ATGACTATGAGTGGCATAGATCAAGCTTTAAGTTCTTGTTCTCGGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACTCCTGTAGATTCAATGCAAGAGTTGCCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATAGCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATATCATGTCAAATGTAACGAAAAGAGATCATGCAGTTCAGTTCCTCATTGTAATCAGAAGCAAGATAAATAGAAGGATGGAATTTGTATTTGCAAGTCACGATTTTGATGTTTGGGAGATTTGGATGTTGGAAGGTTCTCTGGATGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATTCTGGCCACTGTAGGGGAAGATGATGGGGTAACACGCTGGCTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

169

Amino Acids

19.1

Weight (kDa)

6.31

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 474
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 26, 118, 185
AluI AGCT 3 cut(s) 26, 118, 185
AoxI GGCC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 167
BalI TGGCCA 1 cut(s) 467
BbsI GAAGAC 2 cut(s) 66, 203
BccI CCATC 3 cut(s) 164, 328, 479
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 3 cut(s) 129, 254, 508
BfmI CTRYAG 3 cut(s) 84, 421, 471
Bme1390I CCNGG 2 cut(s) 153, 207
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 153, 207
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 66, 203
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 5 cut(s) 175, 339, 387, 406, 451
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 438
BshFI GGCC 1 cut(s) 467
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 474
BsnI GGCC 1 cut(s) 467
Bsp143I GATC 2 cut(s) 19, 283
BspANI GGCC 1 cut(s) 467
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 19, 283
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 162, 422, 472
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 500
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 175, 339, 387, 406, 451
BstKTI GATC 2 cut(s) 22, 286
BstMBI GATC 2 cut(s) 19, 283
BstMWI GCNNNNNNNGC 2 cut(s) 103, 191
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 205
BstSFI CTRYAG 3 cut(s) 84, 421, 471
BstV2I GAAGAC 2 cut(s) 66, 203
BsuRI GGCC 1 cut(s) 467
BtsCI GGATG 5 cut(s) 175, 339, 387, 406, 451
BtsIMutI CAGTG 2 cut(s) 431, 468
Cac8I GCNNGC 1 cut(s) 500
CviAII CATG 3 cut(s) 215, 262, 287
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 21, 285
DpnII GATC 2 cut(s) 19, 283
EaeI YGGCCR 1 cut(s) 465
Eco32I GATATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 259
FaeI CATG 3 cut(s) 218, 265, 290
FaiI YATR 8 cut(s) 8, 17, 177, 190, 192, 216, 263, 288
FatI CATG 3 cut(s) 214, 261, 286
FokI GGATG 5 cut(s) 182, 346, 394, 413, 458
FspBI CTAG 3 cut(s) 129, 254, 508
HaeIII GGCC 1 cut(s) 467
HapII CCGG 1 cut(s) 207
Hin1II CATG 3 cut(s) 218, 265, 290
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 62, 89, 460
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 158, 418
Hpy188I TCNGA 2 cut(s) 112, 314
Hpy188III TCNNGA 5 cut(s) 66, 129, 356, 398, 457
Hpy8I GTNNAC 2 cut(s) 158, 418
HpyAV CCTTC 3 cut(s) 117, 324, 383
HpyCH4III ACNGT 3 cut(s) 162, 422, 472
HpyCH4V TGCA 4 cut(s) 97, 194, 290, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 191
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 3 cut(s) 218, 265, 290
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 19, 283
LweI GCATC 1 cut(s) 462
MaeI CTAG 3 cut(s) 129, 254, 508
MaeIII GTNAC 3 cut(s) 271, 353, 490
MalI GATC 2 cut(s) 21, 285
MboI GATC 2 cut(s) 19, 283
MboII GAAGA 3 cut(s) 71, 203, 491
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 1 cut(s) 338
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 135, 366
MnlI CCTC 2 cut(s) 129, 311
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 29, 164, 234, 417
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 153, 207
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 103, 191
NciI CCSGG 1 cut(s) 207
NdeII GATC 2 cut(s) 19, 283
NlaIII CATG 3 cut(s) 218, 265, 290
NlaIV GGNNCC 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 89, 460
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 251
SaqAI TTAA 4 cut(s) 29, 164, 234, 417
Sau3AI GATC 2 cut(s) 19, 283
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 153, 207
SetI ASST 5 cut(s) 28, 120, 187, 241, 394
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 3 cut(s) 84, 421, 471
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 129, 254, 508
StyD4I CCNGG 2 cut(s) 151, 205
TaaI ACNGT 3 cut(s) 162, 422, 472
TaqI TCGA 1 cut(s) 456
TasI AATT 1 cut(s) 338
TfiI GAWTC 2 cut(s) 89, 460
Tru1I TTAA 4 cut(s) 29, 164, 234, 417
Tru9I TTAA 4 cut(s) 29, 164, 234, 417
TscAI CASTG 2 cut(s) 438, 475
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 2 cut(s) 438, 475
XapI RAATTY 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 128
XspI CTAG 3 cut(s) 129, 254, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.