Rw1G024130

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001355
Physical Location & Seq
Forward (+)
50351358 .. 50358443
7086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024130.1

Sequence Viewer

Length: 2859 bp
ATGGAACCGCAGCATGACAAGGACGCGTCGTCCATGGTCGCCAAGACGAAGAGCGCCAATTCGTACCAGATGCTGAACGGGCCGTCGCTGACGCACTCGGCCTGGTTCGAAATCCGGTTGTTCTACGTCCGGATCGCGCCGTGCGTCATCGACAGCGTGCCGGACCACCTCACGCTCTGCCACCTCCGCCGCGACATCGGCGTCTCTCTCGAGATCAACGGCGCCAGGATTCCGAACTCCGACTCGGCCTCGCTCACGCTCCGCCGCGACCGGCTGGACAAGGAGTCGTCGGAGGTGACGTACGTGGCCACCGACAGCGTGAGGGTCACCGGCGGGGTTGAGTTTGAGGTCTACGAGAACAATGACATGGTGCTGTGCGGGTCGTTGGAGAGAATGGAAGGCGTTTGGCTCAATGGGAATGCGGGGATGGAGAATGATTCCAAGACGGGTTGGAGTATGGATTGTTATATGGCTGCGTCTATTAATTCCGGCTCTTCGGCGTTTTTCCGGCCGAAACTCGGGGTTTCGGCGCCGTCTATAGAGGTTTATATCGCCGGGTGCTGCTCTGGTGTGCCGGTGATATTGACAAAGACGATACAGATTAGTCCCAGGCGGAAGTGCCCAAGGCACGCCACGCTGGATGCTATTCCCGAGGAGGAGGAGGTTGGGAAGGAGCATAGTAAGAGCTGTAATGGGTTAATTCGGCAGCGAAAAGTGCAGATGACAGAATCTGAAATTGATGAGTATGAATCAGATGGAAAAATTGGACATGGTTTCTACTCTGATGAAATGTACACTGGTGAAGATGGTCAACTCACTTGGTTTAATGCTGGTGTTAGAGTTGGAGTTGGAATTGGCCTTGGGATGTGCCTTGGAATAGGGATTGGTGTTGGACTGCTCATGCGTTCCTATCAAGCGACCACTAGTAATTTCAGGAGGAGCAGCGCCGGCATCGGATCCCCCGCCACAATGTCCCACCGCACCACCCAAACGACGTCGTCGCTCCCCCTCGTCGTCACTCTCAACTGCATCGACGACTTCGCCATGGAGCAAGACTGCTTGTCCGGCGTCGCCGCCGTCGAGCACGTCCCTCTCAGCCGCCTGGCCGACGGCAGGATCGAGTCCGCCTCCGCTGTGCTCCTCCAGTCCCTCGCGTACCTCCCACGCGCCGCCCAGCGTCGGCTGCGTCCTTACCAGCTCATCCTCTGCCTTGGGTCTGCTGACCGCGCCACCGACTCCGCTCTCGCCGCCGACCTCGGGCTCCGGCTCGTCCACGTGGACGCCTCCCGCGCCGAGGAGATCGCCGATACGGTTATGGCGCTGTTTCTAGGGTTGCTGAGGAGGACGCACTTGCTCTCGCGCCAAACGCTTTCGGCTTCCGGGTGGCTTGGTTCGGTTCAGCCGCTTTGCCGTGGGATGAGGCGGTGCCGGGGCTTGGTTTTGGGGATTATTGGTAGATCTGCGGCGGCGAGGTCTCTGGCTACTAGGAGCTTGGCCTTCAAGATCAGTGTGCTGTATTTCGATGTAGAGGTGAATGGAAAAGTGAGTAGGTCATATGGCTTTCCCTCTGCTGCCCGAAAGATGGATACTCTAAATGACTTACTTGCTGCGAGTGACCTCATTTCGCTTCATTGTGCTCTGACAAATGAAACAATTCAGATTCTGAATGCTGAATGTTTACAGCACGTAAAGCCTGGAGCATTTCTTGTAAACACGGGTAGCAGTCAACTGTTGGATGATTGTTTTGTGAAACAGCTTTTGATTGATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCCCAATGTGTTGATACTTCCGCACAGTGCAGATTATAGTGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGGGATGAAAATGAACACTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGGAGTCTCCTAGCCAGCAAGGTTCGGGTTTGTCTCAAAATTCAACTACTCGGTCTGAGGGAAGACGAAGTAGATCAGGTAAGAAAGCCAAAAAGAGGCACACACATCAGAAATCCCAGAAGAAATCAGATGAACCTTCACTAGCAAAAGAAAGTACCTCACAGCGGGAGGAAGATACGACTATGAGTGGCACAGATCAAGCATTAAGTTCCAGTTCTCGGTTTGCTTCCCCCGAAGACTCAAGAAGTAGGAAAACACCTATAGAATCAATGCAAGAGTCGCCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGACGGCTATGTTGTAGCTCTATATGCAAGAGATAGCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAACGAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATTAATAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGACTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGATGATGGGGTAACACGCTGGCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

952

Amino Acids

104.32

Weight (kDa)

5.74

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 439 - 623 3.5e-27 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AatII GACGTC 1 cut(s) 998
AccB1I GGYRCC 3 cut(s) 221, 529, 1425
AccBSI CCGCTC 1 cut(s) 1241
AccI GTMKAC 2 cut(s) 351, 2758
AccII CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
AccIII TCCGGA 1 cut(s) 129
AclWI GGATC 5 cut(s) 140, 951, 964, 1124, 2579
AcoI YGGCCR 4 cut(s) 306, 509, 1104, 2814
AcsI RAATTY 2 cut(s) 2164, 2687
AcuI CTGAAG 1 cut(s) 1821
AcvI CACGTG 1 cut(s) 1276
AcyI GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
AfaI GTAC 5 cut(s) 65, 302, 794, 1157, 2281
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 1501, 2169
AhdI GACNNNNNGTC 3 cut(s) 28, 283, 1060
AhlI ACTAGT 1 cut(s) 923
AjiI CACGTC 1 cut(s) 1087
AjnI CCWGG 6 cut(s) 101, 224, 608, 1101, 1693, 2452
Alw21I GWGCWC 3 cut(s) 1086, 1140, 1639
Alw26I GTCTC 4 cut(s) 208, 1479, 2136, 2163
AlwI GGATC 5 cut(s) 140, 951, 964, 1124, 2579
AlwNI CAGNNNCTG 3 cut(s) 73, 731, 1663
Ama87I CYCGRG 4 cut(s) 209, 518, 650, 1256
Aor13HI TCCGGA 1 cut(s) 129
ApoI RAATTY 2 cut(s) 2164, 2687
AseI ATTAAT 2 cut(s) 483, 2673
Asp700I GAANNNNTTC 1 cut(s) 1653
AspS9I GGNCC 3 cut(s) 80, 163, 1805
AsuC2I CCSGG 4 cut(s) 556, 1381, 1430, 2508
AsuHPI GGTGA 6 cut(s) 307, 319, 589, 812, 1543, 2468
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 4 cut(s) 209, 518, 650, 1256
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 2 cut(s) 308, 2816
BamHI GGATCC 1 cut(s) 956
BanI GGYRCC 3 cut(s) 221, 529, 1425
BanII GRGCYC 1 cut(s) 1263
BarI GAAGNNNNNNTAC 2 cut(s) 2608, 2640
BbrPI CACGTG 1 cut(s) 1276
BbsI GAAGAC 3 cut(s) 2194, 2367, 2504
Bbv12I GWGCWC 3 cut(s) 1086, 1140, 1639
BbvCI CCTCAGC 1 cut(s) 1337
BccI CCATC 9 cut(s) 421, 749, 800, 1576, 1760, 1787, 1810, 1934, 2828
BceAI ACGGC 8 cut(s) 67, 124, 235, 517, 1061, 1126, 1395, 2488
BciT130I CCWGG 6 cut(s) 103, 226, 610, 1103, 1695, 2454
BciVI GTATCC 2 cut(s) 1579, 2617
BcnI CCSGG 4 cut(s) 556, 1381, 1430, 2508
BcoDI GTCTC 4 cut(s) 208, 1479, 2136, 2163
BcuI ACTAGT 1 cut(s) 923
BfaI CTAG 7 cut(s) 924, 1328, 1485, 2136, 2267, 2430, 2555
BfmI CTRYAG 5 cut(s) 537, 2385, 2589, 2770, 2820
BfoI RGCGCY 5 cut(s) 57, 225, 533, 948, 1322
BfuI GTATCC 2 cut(s) 1579, 2617
BglII AGATCT 1 cut(s) 1457
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 3 cut(s) 28, 283, 1060
BmeT110I CYCGRG 4 cut(s) 209, 518, 650, 1256
BmgBI CACGTC 1 cut(s) 1087
BmgT120I GGNCC 3 cut(s) 80, 163, 1805
BmiI GGNNCC 7 cut(s) 6, 223, 531, 958, 1262, 1427, 2552
BmsI GCATC 6 cut(s) 60, 631, 960, 1038, 1827, 2811
BpiI GAAGAC 3 cut(s) 2194, 2367, 2504
BplI GAGNNNNNCTC 2 cut(s) 1112, 1144
BpmI CTGGAG 4 cut(s) 1127, 1716, 1913, 2045
Bpu10I CCTNAGC 1 cut(s) 1337
Bpu14I TTCGAA 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 2350
BpuMI CCSGG 4 cut(s) 556, 1381, 1430, 2508
BsaAI YACGTR 3 cut(s) 304, 1276, 1687
BsaHI GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
BsaI GGTCTC 1 cut(s) 1479
BsaWI WCCGGW 2 cut(s) 114, 129
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse118I RCCGGY 4 cut(s) 270, 329, 574, 947
Bse1I ACTGG 7 cut(s) 802, 1144, 2028, 2337, 2766, 2787, 2817
Bse3DI GCAATG 1 cut(s) 1817
BseAI TCCGGA 1 cut(s) 129
BseBI CCWGG 6 cut(s) 103, 226, 610, 1103, 1695, 2454
BseMI GCAATG 1 cut(s) 1817
BseMII CTCAG 5 cut(s) 1108, 1328, 2172, 2432, 2609
BseNI ACTGG 7 cut(s) 802, 1144, 2028, 2337, 2766, 2787, 2817
BseRI GAGGAG 8 cut(s) 668, 671, 674, 952, 1130, 1310, 1354, 1994
BseSI GKGCMC 1 cut(s) 623
BseX3I CGGCCG 1 cut(s) 509
BseYI CCCAGC 2 cut(s) 1173, 1778
BsgI GTGCAG 2 cut(s) 737, 1887
Bsh1236I CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
Bsh1285I CGRYCG 2 cut(s) 271, 512
BshNI GGYRCC 3 cut(s) 221, 529, 1425
BsiEI CGRYCG 2 cut(s) 271, 512
BsiHKAI GWGCWC 3 cut(s) 1086, 1140, 1639
BsiHKCI CYCGRG 4 cut(s) 209, 518, 650, 1256
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 4 cut(s) 591, 958, 1073, 1132
BsmAI GTCTC 4 cut(s) 208, 1479, 2136, 2163
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 4 cut(s) 591, 958, 1073, 1132
BsmI GAATGC 2 cut(s) 424, 1672
Bso31I GGTCTC 1 cut(s) 1479
BsoBI CYCGRG 4 cut(s) 209, 518, 650, 1256
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 5 cut(s) 623, 1086, 1140, 1263, 1639
Bsp13I TCCGGA 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 792
Bsp19I CCATGG 2 cut(s) 33, 1044
BspCNI CTCAG 5 cut(s) 1107, 1329, 2173, 2433, 2608
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
BspLI GGNNCC 7 cut(s) 6, 223, 531, 958, 1262, 1427, 2552
BspMAI CTGCAG 1 cut(s) 2593
BspPI GGATC 5 cut(s) 140, 951, 964, 1124, 2579
BspQI GCTCTTC 2 cut(s) 44, 499
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 3 cut(s) 221, 529, 1425
BspTNI GGTCTC 1 cut(s) 1479
BsrBI CCGCTC 1 cut(s) 1241
BsrDI GCAATG 1 cut(s) 1817
BsrFI RCCGGY 4 cut(s) 270, 329, 574, 947
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 7 cut(s) 802, 1144, 2028, 2337, 2766, 2787, 2817
BssAI RCCGGY 4 cut(s) 270, 329, 574, 947
BssNI GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
BssT1I CCWWGG 7 cut(s) 33, 623, 859, 871, 1044, 1210, 2124
Bst2UI CCWGG 6 cut(s) 103, 226, 610, 1103, 1695, 2454
Bst4CI ACNGT 7 cut(s) 1312, 1731, 1865, 2463, 2708, 2771, 2821
Bst6I CTCTTC 2 cut(s) 44, 499
BstACI GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
BstAUI TGTACA 1 cut(s) 792
BstBAI YACGTR 3 cut(s) 304, 1276, 1687
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 5 cut(s) 158, 630, 949, 2141, 2849
BstDEI CTNAG 5 cut(s) 1094, 1337, 2181, 2441, 2595
BstDSI CCRYGG 3 cut(s) 33, 1044, 1411
BstEII GGTNACC 1 cut(s) 325
BstFNI CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
BstH2I RGCGCY 5 cut(s) 57, 225, 533, 948, 1322
BstMAI GTCTC 4 cut(s) 208, 1479, 2136, 2163
BstMCI CGRYCG 2 cut(s) 271, 512
BstNI CCWGG 6 cut(s) 103, 226, 610, 1103, 1695, 2454
BstPI GGTNACC 1 cut(s) 325
BstSFI CTRYAG 5 cut(s) 537, 2385, 2589, 2770, 2820
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
BstV2I GAAGAC 3 cut(s) 2194, 2367, 2504
BstX2I RGATCY 3 cut(s) 956, 1457, 2584
BstYI RGATCY 3 cut(s) 956, 1457, 2584
BstZI CGGCCG 1 cut(s) 509
BsuI GTATCC 2 cut(s) 1579, 2617
BtgI CCRYGG 3 cut(s) 33, 1044, 1411
BtrI CACGTC 1 cut(s) 1087
BtsIMutI CAGTG 5 cut(s) 795, 1513, 1870, 2780, 2817
Cac8I GCNNGC 5 cut(s) 158, 630, 949, 2141, 2849
CaiI CAGNNNCTG 3 cut(s) 73, 731, 1663
Cfr10I RCCGGY 4 cut(s) 270, 329, 574, 947
Cfr13I GGNCC 3 cut(s) 80, 163, 1805
Csp6I GTAC 5 cut(s) 64, 301, 793, 1156, 2280
CviQI GTAC 5 cut(s) 64, 301, 793, 1156, 2280
DdeI CTNAG 5 cut(s) 1094, 1337, 2181, 2441, 2595
DinI GGCGCC 2 cut(s) 223, 531
DrdI GACNNNNNNGTC 1 cut(s) 200
DriI GACNNNNNGTC 3 cut(s) 28, 283, 1060
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 4 cut(s) 306, 509, 1104, 2814
EagI CGGCCG 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 44, 499
Eam1105I GACNNNNNGTC 3 cut(s) 28, 283, 1060
EarI CTCTTC 2 cut(s) 44, 499
EciI GGCGGA 4 cut(s) 176, 251, 628, 1114
EclXI CGGCCG 1 cut(s) 509
Eco130I CCWWGG 7 cut(s) 33, 623, 859, 871, 1044, 1210, 2124
Eco24I GRGCYC 1 cut(s) 1263
Eco31I GGTCTC 1 cut(s) 1479
Eco47I GGWCC 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 1821
Eco72I CACGTG 1 cut(s) 1276
Eco88I CYCGRG 4 cut(s) 209, 518, 650, 1256
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 6 cut(s) 101, 224, 608, 1101, 1693, 2452
EcoT14I CCWWGG 7 cut(s) 33, 623, 859, 871, 1044, 1210, 2124
EcoT38I GRGCYC 1 cut(s) 1263
EgeI GGCGCC 2 cut(s) 223, 531
EheI GGCGCC 2 cut(s) 223, 531
ErhI CCWWGG 7 cut(s) 33, 623, 859, 871, 1044, 1210, 2124
Esp3I CGTCTC 1 cut(s) 208
FaqI GGGAC 4 cut(s) 591, 958, 1073, 1132
FauI CCCGC 6 cut(s) 326, 371, 415, 970, 1295, 2283
FauNDI CATATG 1 cut(s) 1555
FblI GTMKAC 2 cut(s) 351, 2758
FriOI GRGCYC 1 cut(s) 1263
FspBI CTAG 7 cut(s) 924, 1328, 1485, 2136, 2267, 2430, 2555
GsaI CCCAGC 2 cut(s) 1177, 1782
GsuI CTGGAG 4 cut(s) 1127, 1716, 1913, 2045
HaeII RGCGCY 5 cut(s) 57, 225, 533, 948, 1322
Hin1I GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
HincII GTYRAC 3 cut(s) 812, 1727, 2767
HindII GTYRAC 3 cut(s) 812, 1727, 2767
HpaI GTTAAC 1 cut(s) 2767
HphI GGTGA 6 cut(s) 307, 319, 589, 812, 1543, 2468
HpyAV CCTTC 7 cut(s) 392, 664, 1507, 1796, 2271, 2418, 2732
HpyCH4III ACNGT 7 cut(s) 1312, 1731, 1865, 2463, 2708, 2771, 2821
HpyCH4IV ACGT 7 cut(s) 126, 299, 303, 995, 1086, 1275, 1686
HpyCH4V TGCA 9 cut(s) 718, 1029, 1868, 1924, 2084, 2398, 2495, 2591, 2668
HpyF3I CTNAG 5 cut(s) 1094, 1337, 2181, 2441, 2595
HpySE526I ACGT 7 cut(s) 126, 299, 303, 995, 1086, 1275, 1686
Hsp92I GRCGYC 6 cut(s) 201, 222, 530, 995, 1068, 1281
KasI GGCGCC 2 cut(s) 221, 529
Kpn2I TCCGGA 1 cut(s) 129
KroI GCCGGC 1 cut(s) 947
KroNI GCCGGC 1 cut(s) 949
KspAI GTTAAC 1 cut(s) 2767
LguI GCTCTTC 2 cut(s) 44, 499
LweI GCATC 6 cut(s) 60, 631, 960, 1038, 1827, 2811
MaeI CTAG 7 cut(s) 924, 1328, 1485, 2136, 2267, 2430, 2555
MaeII ACGT 7 cut(s) 126, 299, 303, 995, 1086, 1275, 1686
MaeIII GTNAC 7 cut(s) 295, 325, 1015, 1613, 2572, 2702, 2839
MbiI CCGCTC 1 cut(s) 1241
MflI RGATCY 3 cut(s) 956, 1457, 2584
MhlI GDGCHC 5 cut(s) 623, 1086, 1140, 1263, 1639
MlsI TGGCCA 2 cut(s) 308, 2816
MluI ACGCGT 1 cut(s) 24
MluNI TGGCCA 2 cut(s) 308, 2816
Mly113I GGCGCC 2 cut(s) 222, 530
MlyI GAGTC 7 cut(s) 236, 293, 1130, 1229, 2138, 2357, 2411
Mox20I TGGCCA 2 cut(s) 308, 2816
MroI TCCGGA 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 947
MroXI GAANNNNTTC 1 cut(s) 1653
MscI TGGCCA 2 cut(s) 308, 2816
MseI TTAA 9 cut(s) 483, 698, 825, 2066, 2330, 2465, 2535, 2673, 2766
Msp20I TGGCCA 2 cut(s) 308, 2816
MspA1I CMGCKG 2 cut(s) 1133, 2290
Mva1269I GAATGC 2 cut(s) 424, 1672
MvaI CCWGG 6 cut(s) 103, 226, 610, 1103, 1695, 2454
MvnI CGCG 9 cut(s) 26, 137, 192, 267, 1154, 1167, 1227, 1290, 1360
NaeI GCCGGC 1 cut(s) 949
NarI GGCGCC 2 cut(s) 222, 530
NciI CCSGG 4 cut(s) 556, 1381, 1430, 2508
NcoI CCATGG 2 cut(s) 33, 1044
NdeI CATATG 1 cut(s) 1555
NgoMIV GCCGGC 1 cut(s) 947
NlaIV GGNNCC 7 cut(s) 6, 223, 531, 958, 1262, 1427, 2552
NmeAIII GCCGAG 3 cut(s) 77, 224, 1318
NmuCI GTSAC 5 cut(s) 295, 325, 1015, 1613, 2702
NspV TTCGAA 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 209
PciSI GCTCTTC 2 cut(s) 44, 499
PcsI WCGNNNNNNNCGW 5 cut(s) 141, 296, 309, 1077, 1116
PctI GAATGC 2 cut(s) 424, 1672
PdiI GCCGGC 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 1653
PfeI GAWTC 6 cut(s) 229, 437, 728, 749, 1660, 2390
Pfl23II CGTACG 1 cut(s) 300
PflFI GACNNNGTC 1 cut(s) 997
PleI GAGTC 7 cut(s) 236, 292, 1129, 1229, 2137, 2357, 2410
PluTI GGCGCC 2 cut(s) 225, 533
PmaCI CACGTG 1 cut(s) 1276
PmlI CACGTG 1 cut(s) 1276
PpsI GAGTC 7 cut(s) 236, 292, 1129, 1229, 2137, 2357, 2410
Ppu21I YACGTR 3 cut(s) 304, 1276, 1687
PshBI ATTAAT 2 cut(s) 483, 2673
Psp6I CCWGG 6 cut(s) 101, 224, 608, 1101, 1693, 2452
PspCI CACGTG 1 cut(s) 1276
PspEI GGTNACC 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 1173, 1778
PspGI CCWGG 6 cut(s) 101, 224, 608, 1101, 1693, 2452
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 7 cut(s) 6, 223, 531, 958, 1262, 1427, 2552
PspPI GGNCC 3 cut(s) 80, 163, 1805
PstI CTGCAG 1 cut(s) 2593
PstNI CAGNNNCTG 3 cut(s) 73, 731, 1663
PsuI RGATCY 3 cut(s) 956, 1457, 2584
PsyI GACNNNGTC 1 cut(s) 997
RsaI GTAC 5 cut(s) 65, 302, 794, 1157, 2281
RsaNI GTAC 5 cut(s) 64, 301, 793, 1156, 2280
SapI GCTCTTC 2 cut(s) 44, 499
SaqAI TTAA 9 cut(s) 483, 698, 825, 2066, 2330, 2465, 2535, 2673, 2766
Sau96I GGNCC 3 cut(s) 80, 163, 1805
SchI GAGTC 7 cut(s) 236, 293, 1130, 1229, 2138, 2357, 2411
SduI GDGCHC 5 cut(s) 623, 1086, 1140, 1263, 1639
SfaNI GCATC 6 cut(s) 60, 631, 960, 1038, 1827, 2811
SfcI CTRYAG 5 cut(s) 537, 2385, 2589, 2770, 2820
SfoI GGCGCC 2 cut(s) 223, 531
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 209, 2365
SmoI CTYRAG 2 cut(s) 209, 2365
SpeI ACTAGT 1 cut(s) 923
SspDI GGCGCC 2 cut(s) 221, 529
SspMI CTAG 7 cut(s) 924, 1328, 1485, 2136, 2267, 2430, 2555
StyI CCWWGG 7 cut(s) 33, 623, 859, 871, 1044, 1210, 2124
TaaI ACNGT 7 cut(s) 1312, 1731, 1865, 2463, 2708, 2771, 2821
TaiI ACGT 7 cut(s) 129, 302, 306, 998, 1089, 1278, 1689
TaqI TCGA 8 cut(s) 108, 150, 210, 1032, 1080, 1119, 1521, 2805
TaqII GACCGA 1 cut(s) 2166
TatI WGTACW 1 cut(s) 792
TfiI GAWTC 6 cut(s) 229, 437, 728, 749, 1660, 2390
Tru1I TTAA 9 cut(s) 483, 698, 825, 2066, 2330, 2465, 2535, 2673, 2766
Tru9I TTAA 9 cut(s) 483, 698, 825, 2066, 2330, 2465, 2535, 2673, 2766
TscAI CASTG 5 cut(s) 802, 1513, 1870, 2787, 2824
TseFI GTSAC 5 cut(s) 295, 325, 1015, 1613, 2702
Tsp45I GTSAC 5 cut(s) 295, 325, 1015, 1613, 2702
TspDTI ATGAA 8 cut(s) 762, 801, 1619, 1662, 2016, 2022, 2271, 2504
TspGWI ACGGA 1 cut(s) 1906
TspRI CASTG 5 cut(s) 802, 1513, 1870, 2787, 2824
Tth111I GACNNNGTC 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 2 cut(s) 483, 2673
XapI RAATTY 2 cut(s) 2164, 2687
XbaI TCTAGA 1 cut(s) 2429
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 2 cut(s) 351, 2758
XmnI GAANNNNTTC 1 cut(s) 1653
XspI CTAG 7 cut(s) 924, 1328, 1485, 2136, 2267, 2430, 2555
ZraI GACGTC 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.