Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001355

Physical Location & Seq

Genomic Coordinates Reverse (-)

48510876 .. 48512670

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAAGCATGGGTAAAGGAGATGCTCAATGTATTGATACTTCCGCACAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGTCTCCTAGCCAGCAAGGTTTGGGTTTGTCTCAAAATTCAACTACTCGGTCTGATGGAAGACGAAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

4.37

Isoelectric Point (pI)

77.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01510
fragaria_vesca	FvH4_7g15180 FvH4_7g15180
malus_domestica	MD01G1070100.v1.1 MD07G1132400.v1.1
prunus_persica	Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1
pyrus_communis	pycom01g09930 pycom07g12920
rosa_chinensis	RchiOBHm_Chr1g0356181 RchiOBHm_Chr1g0357601 RchiOBHm_Chr1g0357901 RchiOBHm_Chr1g0357951 RchiOBHm_Chr1g0357961 RchiOBHm_Chr1g0358001 RchiOBHm_Chr1g0358011 RchiOBHm_Chr1g0358061 RchiOBHm_Chr1g0358071 RchiOBHm_Chr1g0358081 RchiOBHm_Chr1g0358101 RchiOBHm_Chr1g0358111 RchiOBHm_Chr1g0358151 RchiOBHm_Chr1g0358161 RchiOBHm_Chr5g0017371
rosa_laevigata	RLG00000027986 RLG00000028016 RLG00000028017 RLG00000028018
rosa_multiflora	Rmu_co8139580.1_g000001 Rmu_sc0005812.1_g000010 Rmu_sc0007849.1_g000010 Rmu_sc0010521.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298390 Rroxscaffold_4G00298410
rosa_rugosa	Rorug01G0256800
rosa_samantha	Rh1AG147500 Rh1AG271100 Rh1AG273300 Rh1BG237900 Rh1CG138900 Rh1CG254800 Rh1DG265900 Rh1DG269100 Rh1DG269300 Rh1DG269400 Rh4CG143200 Rh5BG417100 Rh5CG441600 Rh6BG411700
rosa_wichuraiana	Rw1G024130 Rw1G024150 Rw1G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	2 cut(s)	232, 282
AluI	AGCT	2 cut(s)	232, 282
Alw26I	GTCTC	2 cut(s)	318, 345
ApoI	RAATTY	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	1 cut(s)	376
BccI	CCATC	2 cut(s)	119, 359
BcoDI	GTCTC	2 cut(s)	318, 345
BfaI	CTAG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	2 cut(s)	98, 230
Bse1I	ACTGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	318, 345
BspACI	CCGC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	318, 345
BstV2I	GAAGAC	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	323
CviAII	CATG	2 cut(s)	9, 266
CviJI	RGCY	4 cut(s)	76, 232, 282, 321
CviKI_1	RGCY	4 cut(s)	76, 232, 282, 321
FaeI	CATG	2 cut(s)	12, 269
FaiI	YATR	4 cut(s)	10, 60, 73, 267
FatI	CATG	2 cut(s)	8, 265
FokI	GGATG	1 cut(s)	173
FspBI	CTAG	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	98, 230
Hin1II	CATG	2 cut(s)	12, 269
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	154, 202, 364
Hpy188III	TCNNGA	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	53, 109, 269
Hsp92II	CATG	2 cut(s)	12, 269
LmnI	GCTCC	2 cut(s)	211, 287
LpnPI	CCDG	5 cut(s)	62, 194, 288, 299, 335
LweI	GCATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	318
MboII	GAAGA	3 cut(s)	77, 109, 381
MluCI	AATT	2 cut(s)	248, 346
MnlI	CCTC	4 cut(s)	151, 157, 160, 208
MseI	TTAA	1 cut(s)	251
NlaIII	CATG	2 cut(s)	12, 269
SaqAI	TTAA	1 cut(s)	251
SetI	ASST	4 cut(s)	184, 234, 284, 331
SfaNI	GCATC	1 cut(s)	12
Sse9I	AATT	2 cut(s)	248, 346
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	50
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	2 cut(s)	248, 346
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	201, 207
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.