Rh5CG441600

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001355
Physical Location & Seq
Reverse (-)
61366188 .. 61367615
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG441600.1

Sequence Viewer

Length: 192 bp
ATGTTGGAAGGATCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGATGATGGGGTAACACGCTGGCTTGATTTGGACTGGAACATGAGAGGATTAGCGACTCAAATGGAGGGGTTCAGTGTTTCCAAACTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

63

Amino Acids

7.03

Weight (kDa)

4.34

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 84
AflII CTTAAG 1 cut(s) 185
AlwI GGATC 1 cut(s) 19
AoxI GGCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 86
BccI CCATC 1 cut(s) 98
BfmI CTRYAG 2 cut(s) 40, 90
BfrI CTTAAG 1 cut(s) 185
BmsI GCATC 1 cut(s) 81
Bse1I ACTGG 3 cut(s) 57, 87, 137
BseGI GGATG 1 cut(s) 70
BseNI ACTGG 3 cut(s) 57, 87, 137
BshFI GGCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 11
BspANI GGCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 19
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 57, 87, 137
BssMI GATC 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 41, 91
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 40, 90
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 50, 87, 178
Cac8I GCNNGC 1 cut(s) 119
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 31, 56, 86, 121
CviKI_1 RGCY 4 cut(s) 31, 56, 86, 121
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 84
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FatI CATG 1 cut(s) 138
FokI GGATG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 154
HpaI GTTAAC 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 17, 76
Hpy8I GTNNAC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 41, 91
Hsp92II CATG 1 cut(s) 142
KspAI GTTAAC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 2, 17, 38, 68, 103, 118
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 148
MnlI CCTC 2 cut(s) 137, 157
Mox20I TGGCCA 1 cut(s) 86
MscI TGGCCA 1 cut(s) 86
MseI TTAA 2 cut(s) 36, 186
Msp20I TGGCCA 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 185
NdeII GATC 1 cut(s) 11
NlaIII CATG 1 cut(s) 142
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 11
SaqAI TTAA 2 cut(s) 36, 186
Sau3AI GATC 1 cut(s) 11
SchI GAGTC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 40, 90
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 41, 91
TaqI TCGA 1 cut(s) 75
Tru1I TTAA 2 cut(s) 36, 186
Tru9I TTAA 2 cut(s) 36, 186
TscAI CASTG 3 cut(s) 57, 94, 178
TspRI CASTG 3 cut(s) 57, 94, 178
Vha464I CTTAAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.