RchiOBHm_Chr5g0017371

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001355
Physical Location & Seq
Reverse (-)
12043647 .. 12045299
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29767

Sequence Viewer

Length: 249 bp
ATGGCAGCTCATGTGCAGAAAGAGGAATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGAGGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGATGAGTGTAGGCTGGTTAACTGTAGAAATTCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGTGAAGATGATGGGGTAACACGCTGGCTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

82

Amino Acids

9.44

Weight (kDa)

4.4

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 77, 166
AgsI TTSAA 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 5, 46
ApoI RAATTY 2 cut(s) 77, 166
AsuHPI GGTGA 1 cut(s) 227
BalI TGGCCA 1 cut(s) 206
BbvI GCAGC 2 cut(s) 17, 33
BccI CCATC 1 cut(s) 218
BfmI CTRYAG 2 cut(s) 160, 210
BisI GCNGC 2 cut(s) 6, 47
BlsI GCNGC 2 cut(s) 7, 48
BmsI GCATC 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 177, 207
BseGI GGATG 3 cut(s) 126, 145, 190
BseNI ACTGG 2 cut(s) 177, 207
BseXI GCAGC 2 cut(s) 17, 33
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 206
BsnI GGCC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 206
BsrI ACTGG 2 cut(s) 177, 207
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 3 cut(s) 98, 161, 211
BstC8I GCNNGC 1 cut(s) 239
BstF5I GGATG 3 cut(s) 126, 145, 190
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstSFI CTRYAG 2 cut(s) 160, 210
BstV1I GCAGC 2 cut(s) 17, 33
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 3 cut(s) 126, 145, 190
BtsIMutI CAGTG 2 cut(s) 170, 207
Cac8I GCNNGC 1 cut(s) 239
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 8, 151, 176, 206, 241
CviKI_1 RGCY 5 cut(s) 8, 151, 176, 206, 241
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 204
FaeI CATG 1 cut(s) 14
FaiI YATR 1 cut(s) 12
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 6, 47
FokI GGATG 3 cut(s) 133, 152, 197
Fsp4HI GCNGC 2 cut(s) 6, 47
GluI GCNGC 2 cut(s) 6, 47
HaeIII GGCC 1 cut(s) 206
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 137, 196
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 98, 161, 211
HpyCH4V TGCA 2 cut(s) 16, 66
Hsp92II CATG 1 cut(s) 14
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 6 cut(s) 35, 122, 137, 158, 188, 223
Lsp1109I GCAGC 2 cut(s) 17, 33
LweI GCATC 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 92, 229
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 81, 230
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 3 cut(s) 26, 77, 166
MluNI TGGCCA 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 98, 105
MnlI CCTC 2 cut(s) 16, 97
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 206
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 7, 48
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 6, 47
Sau3AI GATC 1 cut(s) 37
SetI ASST 4 cut(s) 10, 108, 133, 217
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 160, 210
SgeI CNNG 8 cut(s) 23, 62, 102, 149, 164, 185, 208, 215
Sse9I AATT 3 cut(s) 26, 77, 166
TaaI ACNGT 3 cut(s) 98, 161, 211
TaqI TCGA 1 cut(s) 195
TasI AATT 3 cut(s) 26, 77, 166
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 177, 214
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 2 cut(s) 5, 46
Tsp45I GTSAC 1 cut(s) 92
TspRI CASTG 2 cut(s) 177, 214
XapI RAATTY 2 cut(s) 77, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.