Rw1G024410

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001355
Physical Location & Seq
Reverse (-)
50611558 .. 50613894
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024410.1

Sequence Viewer

Length: 771 bp
ATGGAAGCATGGGTAAAGGAGATGCCCAATGTGTTAATACTTCCCCACAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCAGATGAGGACAAGGAGGATAGTGAAATAGAAAAACCCTTACAGCTAACCCTCATTCAACAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGGAGTCTCCTAGCCGGCAAGGTTCGGGTTTGTCTCAAAATTCAACTACTCGGCACACACATCAGAAATCCCAGAAGAAATCAGATGAACCTTCACTAGCAAAAGAAGGTACCTCGCAGCGGGAGGAAGATACGACTATGAAGGATGGCTATGTTGTAGCTATATATGCAAGAGATAGCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAATGAAAAGAGATCCTGCAGTTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCCGATAAATAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGGAGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGAAGATGGGGTTAACACGCTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

256

Amino Acids

28.52

Weight (kDa)

5.09

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AciI CCGC 1 cut(s) 394
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 2 cut(s) 313, 635
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 2 cut(s) 209, 318
AluBI AGCT 4 cut(s) 196, 246, 434, 701
AluI AGCT 4 cut(s) 196, 246, 434, 701
Alw26I GTCTC 2 cut(s) 285, 312
AlwI GGATC 1 cut(s) 527
AoxI GGCC 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 391, 596
ApoI RAATTY 2 cut(s) 313, 635
Asp718I GGTACC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 456
BalI TGGCCA 1 cut(s) 731
BanI GGYRCC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 556, 588
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 403, 583
BccI CCATC 3 cut(s) 119, 413, 743
BciVI GTATCC 1 cut(s) 565
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 285, 312
BfaI CTAG 3 cut(s) 285, 371, 503
BfmI CTRYAG 2 cut(s) 537, 735
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 2 cut(s) 392, 597
BlsI GCNGC 2 cut(s) 393, 598
Bme1390I CCNGG 1 cut(s) 456
BmiI GGNNCC 2 cut(s) 385, 500
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 2 cut(s) 12, 726
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 273, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 732
BseDI CCNNGG 2 cut(s) 273, 454
BseGI GGATG 3 cut(s) 424, 684, 715
BseLI CCNNNNNNNGG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 732
BseXI GCAGC 2 cut(s) 403, 583
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 731
BshNI GGYRCC 1 cut(s) 383
BsiSI CCGG 2 cut(s) 289, 456
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 2 cut(s) 285, 312
BsnI GGCC 1 cut(s) 731
Bsp143I GATC 2 cut(s) 532, 587
BspACI CCGC 1 cut(s) 394
BspANI GGCC 1 cut(s) 731
BspLI GGNNCC 2 cut(s) 385, 500
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 1 cut(s) 732
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 2 cut(s) 273, 454
BssMI GATC 2 cut(s) 532, 587
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 3 cut(s) 50, 656, 736
BstC8I GCNNGC 2 cut(s) 290, 765
BstF5I GGATG 3 cut(s) 424, 684, 715
BstKTI GATC 2 cut(s) 535, 590
BstMAI GTCTC 2 cut(s) 285, 312
BstMBI GATC 2 cut(s) 532, 587
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 2 cut(s) 537, 735
BstV1I GCAGC 2 cut(s) 403, 583
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 1 cut(s) 731
BtsCI GGATG 3 cut(s) 424, 684, 715
BtsIMutI CAGTG 2 cut(s) 55, 732
Cac8I GCNNGC 2 cut(s) 290, 765
Cfr10I RCCGGY 1 cut(s) 288
Csp6I GTAC 1 cut(s) 384
CviAII CATG 4 cut(s) 9, 230, 464, 511
CviQI GTAC 1 cut(s) 384
DpnI GATC 2 cut(s) 534, 589
DpnII GATC 2 cut(s) 532, 587
EaeI YGGCCR 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 12, 233, 467, 514
FatI CATG 4 cut(s) 8, 229, 463, 510
FauI CCCGC 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 392, 597
FokI GGATG 3 cut(s) 431, 691, 722
Fsp4HI GCNGC 2 cut(s) 392, 597
FspBI CTAG 3 cut(s) 285, 371, 503
GluI GCNGC 2 cut(s) 392, 597
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 731
HapII CCGG 2 cut(s) 289, 456
Hin1II CATG 4 cut(s) 12, 233, 467, 514
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 1 cut(s) 278
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 2 cut(s) 289, 456
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 4 cut(s) 154, 339, 358, 563
Hpy188III TCNNGA 2 cut(s) 239, 721
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 4 cut(s) 374, 375, 409, 680
HpyCH4III ACNGT 3 cut(s) 50, 656, 736
HpyCH4V TGCA 5 cut(s) 53, 109, 233, 443, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
Hsp92II CATG 4 cut(s) 12, 233, 467, 514
KpnI GGTACC 1 cut(s) 387
KroI GCCGGC 1 cut(s) 288
KroNI GCCGGC 1 cut(s) 290
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 2 cut(s) 532, 587
LmnI GCTCC 2 cut(s) 251, 698
Lsp1109I GCAGC 2 cut(s) 403, 583
LweI GCATC 2 cut(s) 12, 726
MaeI CTAG 3 cut(s) 285, 371, 503
MaeIII GTNAC 1 cut(s) 650
MalI GATC 2 cut(s) 534, 589
MboI GATC 2 cut(s) 532, 587
MboII GAAGA 8 cut(s) 77, 109, 361, 413, 452, 639, 755, 758
MflI RGATCY 1 cut(s) 532
MlsI TGGCCA 1 cut(s) 731
MluCI AATT 3 cut(s) 212, 313, 635
MluNI TGGCCA 1 cut(s) 731
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 656, 663
MnlI CCTC 6 cut(s) 151, 160, 212, 391, 397, 560
Mox20I TGGCCA 1 cut(s) 731
MroNI GCCGGC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 731
MseI TTAA 4 cut(s) 35, 215, 483, 756
Msp20I TGGCCA 1 cut(s) 731
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 2 cut(s) 289, 456
MspR9I CCNGG 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 440
NaeI GCCGGC 1 cut(s) 290
NciI CCSGG 1 cut(s) 456
NdeII GATC 2 cut(s) 532, 587
NgoMIV GCCGGC 1 cut(s) 288
NlaIII CATG 4 cut(s) 12, 233, 467, 514
NlaIV GGNNCC 2 cut(s) 385, 500
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 650
PdiI GCCGGC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 393, 598
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 385, 500
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SaqAI TTAA 4 cut(s) 35, 215, 483, 756
SatI GCNGC 2 cut(s) 392, 597
Sau3AI GATC 2 cut(s) 532, 587
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 456
SfaNI GCATC 2 cut(s) 12, 726
SfcI CTRYAG 2 cut(s) 537, 735
Sse9I AATT 3 cut(s) 212, 313, 635
SsiI CCGC 1 cut(s) 394
SspMI CTAG 3 cut(s) 285, 371, 503
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 50, 656, 736
TaqI TCGA 1 cut(s) 720
TasI AATT 3 cut(s) 212, 313, 635
Tru1I TTAA 4 cut(s) 35, 215, 483, 756
Tru9I TTAA 4 cut(s) 35, 215, 483, 756
TscAI CASTG 2 cut(s) 55, 739
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 2 cut(s) 391, 596
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 375, 428, 452, 539
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 2 cut(s) 55, 739
XapI RAATTY 2 cut(s) 313, 635
XspI CTAG 3 cut(s) 285, 371, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.