RchiOBHm_Chr1g0357961

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50171340 .. 50172546
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58316

Sequence Viewer

Length: 573 bp
ATGGTATGTGATCGATTAATTGACAGTTCGATTAAGCCTGGGCCTTGTTTCCGAGGAGATCGCCGATACAGTTATGGCGCTGTTTCTAGGGTTGCTGAGGAGGACGCACTTGCTCTCGCGCCAAACGCTTTCGGCTTCGGGGTGGCGAGGTCTCTGGCTACTAGGAGCTTCGCCTTCAAGATCAGTGTGCTGTATTTTGATGTAGAGGTAAAGGAGATGCCCAATGTATTGATACTTCCGCAGAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGTAACCAATCAATCCAAGGAGTCTCCTAGCCAGCAAGGTTCGGGTTTGTCTCAAAATTCAACTACTCGGTCTGATGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

190

Amino Acids

21.0

Weight (kDa)

4.47

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 544
AgsI TTSAA 2 cut(s) 178, 549
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 168, 427, 477
AluI AGCT 3 cut(s) 168, 427, 477
Alw26I GTCTC 3 cut(s) 156, 516, 543
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 544
AseI ATTAAT 1 cut(s) 17
AspLEI GCGC 2 cut(s) 80, 121
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
BbvCI CCTCAGC 1 cut(s) 96
BccI CCATC 2 cut(s) 314, 557
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 3 cut(s) 156, 516, 543
BfaI CTAG 3 cut(s) 87, 162, 516
BfoI RGCGCY 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 207
BpmI CTGGAG 2 cut(s) 293, 425
Bpu10I CCTNAGC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 3 cut(s) 38, 52, 504
Bse1I ACTGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 3 cut(s) 38, 52, 504
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 3 cut(s) 69, 113, 374
BsgI GTGCAG 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 13
BsmAI GTCTC 3 cut(s) 156, 516, 543
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 10, 58, 180
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 13
BspFNI CGCG 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 38, 52, 504
BssMI GATC 3 cut(s) 10, 58, 180
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 26, 71
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 80, 121
BstKTI GATC 3 cut(s) 13, 61, 183
BstMAI GTCTC 3 cut(s) 156, 516, 543
BstMBI GATC 3 cut(s) 10, 58, 180
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstUI CGCG 1 cut(s) 119
Bsu15I ATCGAT 1 cut(s) 13
BsuRI GGCC 1 cut(s) 43
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 2 cut(s) 80, 121
Cfr13I GGNCC 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 13
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 461
CviJI RGCY 9 cut(s) 37, 43, 135, 158, 168, 271, 427, 477, 519
CviKI_1 RGCY 9 cut(s) 37, 43, 135, 158, 168, 271, 427, 477, 519
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 12, 60, 182
DpnII GATC 3 cut(s) 10, 58, 180
Eco130I CCWWGG 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 1 cut(s) 464
FaiI YATR 5 cut(s) 7, 75, 255, 268, 462
FatI CATG 1 cut(s) 460
FokI GGATG 1 cut(s) 368
FspBI CTAG 3 cut(s) 87, 162, 516
GlaI GCGC 2 cut(s) 79, 120
GsuI CTGGAG 2 cut(s) 293, 425
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 43
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 80, 121
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 2 cut(s) 78, 119
HinP1I GCGC 2 cut(s) 78, 119
HinfI GANTC 1 cut(s) 509
HphI GGTGA 1 cut(s) 389
Hpy188I TCNGA 4 cut(s) 53, 349, 397, 562
Hpy188III TCNNGA 2 cut(s) 178, 470
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 26, 71
HpyCH4V TGCA 3 cut(s) 248, 304, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 2 cut(s) 78, 119
Kzo9I GATC 3 cut(s) 10, 58, 180
LmnI GCTCC 3 cut(s) 165, 406, 482
LpnPI CCDG 8 cut(s) 24, 51, 140, 257, 389, 483, 494, 533
LweI GCATC 1 cut(s) 207
MaeI CTAG 3 cut(s) 87, 162, 516
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 12, 60, 182
MboI GATC 3 cut(s) 10, 58, 180
MboII GAAGA 2 cut(s) 272, 304
MluCI AATT 3 cut(s) 18, 443, 544
MlyI GAGTC 1 cut(s) 518
MnlI CCTC 9 cut(s) 47, 91, 94, 141, 199, 346, 352, 355, 403
MseI TTAA 3 cut(s) 17, 33, 446
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 3 cut(s) 10, 58, 180
NlaIII CATG 1 cut(s) 464
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 17, 33, 446
Sau3AI GATC 3 cut(s) 10, 58, 180
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 39
SetI ASST 7 cut(s) 152, 170, 210, 379, 429, 479, 529
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 3 cut(s) 18, 443, 544
SsiI CCGC 1 cut(s) 239
SspMI CTAG 3 cut(s) 87, 162, 516
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 26, 71
TaqI TCGA 2 cut(s) 13, 29
TaqII GACCGA 1 cut(s) 546
TasI AATT 3 cut(s) 18, 443, 544
Tru1I TTAA 3 cut(s) 17, 33, 446
Tru9I TTAA 3 cut(s) 17, 33, 446
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 396, 402
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 190
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 544
XspI CTAG 3 cut(s) 87, 162, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.