RchiOBHm_Chr1g0358161

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50225275 .. 50226041
767 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58334

Sequence Viewer

Length: 399 bp
ATGAATAAGCGGTTGAGTCTAATAATAAGCCTTGAGCTGGAGCGAGTTCTGGTTAGTGTTTTATCTTACTACAAGGAGCGGTGCCGGGGCTTGGTTTTGGGGATTATCGGTAGATCTGCGGCGGCGAGGTCTATGCCTACTAGGAGATTGGCCTTCAAGATCAGTGTGTTGTATTTTGATGTACAGGTGAATGGAAAAGTGAGTAGGTCTTATGGCTTTCCTTCTGCTGCCCGAAAGATGGATACTCTAAATGACTTACTTGCTGCGAGTGACCTCATTTCACTTCATTGTGCTCTGACAAATGAAACAATTCAGAATCTGAATGCTGAATCTTTACAGCACGTAAAGGCTGGAGCATTTCTTGTAAACACGGGTAGCTGTTGGATGATTGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

132

Amino Acids

14.6

Weight (kDa)

9.72

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 24 - 125 2e-16 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 79
AciI CCGC 4 cut(s) 10, 79, 119, 122
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 3 cut(s) 37, 91, 238
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 37, 378
AluI AGCT 2 cut(s) 37, 378
Alw21I GWGCWC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 227, 263
Asp700I GAANNNNTTC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 199
BanI GGYRCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 214, 250
BccI CCATC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 235
BglII AGATCT 1 cut(s) 113
BisI GCNGC 4 cut(s) 120, 123, 228, 264
BlsI GCNGC 4 cut(s) 121, 124, 229, 265
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 86
BpmI CTGGAG 2 cut(s) 59, 372
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 91, 238
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 37, 91, 238
BseXI GCAGC 2 cut(s) 214, 250
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 37, 91, 238
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 113, 159
BspACI CCGC 4 cut(s) 10, 79, 119, 122
BspANI GGCC 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 113, 159
BstAUI TGTACA 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 343
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 2 cut(s) 116, 162
BstMBI GATC 2 cut(s) 113, 159
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 214, 250
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 319
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 7 cut(s) 30, 37, 90, 152, 216, 350, 378
CviKI_1 RGCY 7 cut(s) 30, 37, 90, 152, 216, 350, 378
CviQI GTAC 1 cut(s) 182
DpnI GATC 2 cut(s) 115, 161
DpnII GATC 2 cut(s) 113, 159
FaiI YATR 2 cut(s) 134, 213
Fnu4HI GCNGC 4 cut(s) 120, 123, 228, 264
Fsp4HI GCNGC 4 cut(s) 120, 123, 228, 264
FspBI CTAG 1 cut(s) 141
GluI GCNGC 4 cut(s) 120, 123, 228, 264
GsuI CTGGAG 2 cut(s) 59, 372
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 85
HinfI GANTC 3 cut(s) 16, 316, 329
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 3 cut(s) 297, 315, 321
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 2 cut(s) 163, 231
HpyCH4IV ACGT 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 342
Kzo9I GATC 2 cut(s) 113, 159
LmnI GCTCC 3 cut(s) 40, 76, 353
LpnPI CCDG 5 cut(s) 23, 35, 98, 170, 336
Lsp1109I GCAGC 2 cut(s) 214, 250
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 269
MalI GATC 2 cut(s) 115, 161
MbiI CCGCTC 1 cut(s) 79
MboI GATC 2 cut(s) 113, 159
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 2 cut(s) 120, 284
MroXI GAANNNNTTC 1 cut(s) 309
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 328
NciI CCSGG 1 cut(s) 86
NdeII GATC 2 cut(s) 113, 159
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 269
PctI GAATGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 316, 329
PkrI GCNGC 4 cut(s) 121, 124, 229, 265
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SatI GCNGC 4 cut(s) 120, 123, 228, 264
Sau3AI GATC 2 cut(s) 113, 159
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 295
SetI ASST 7 cut(s) 39, 131, 189, 209, 276, 345, 380
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 309
SsiI CCGC 4 cut(s) 10, 79, 119, 122
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 84
TaiI ACGT 1 cut(s) 345
TasI AATT 1 cut(s) 309
TatI WGTACW 1 cut(s) 181
TauI GCSGC 2 cut(s) 122, 125
TfiI GAWTC 2 cut(s) 316, 329
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 227, 263
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 17, 275, 318
TspRI CASTG 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.