Rmu_co8139580.1_g000001

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8139580.1
OG0001355
Physical Location & Seq
Forward (+)
64 .. 575
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8139580.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgagtggcacagatcaagcgttaagttccagttctcggtttgcttcccccgaagactcaagaagtaggaaaacacctatagaatcaatgcaagagtcaccttccgaccagcttctaaaatctagaaagaggctgagtggaaagcctggtgaattgttaaaggatggctatgttgtagctctatatgcaagagatagccccggtcttcatgtcgcaaggcaaagagttaaaggtggtggttggttcctagataccatgtcaaatgtaacaaaaagagatcctgcagttcagttcctcattgtaatcagaagcaaggataccattggtttgcgatcttttgctgctggtggaaagttattgcaggtaatattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

124

Amino Acids

13.58

Weight (kDa)

10.21

Isoelectric Point (pI)

70.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AclWI GGATC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 36
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 112, 179
AluI AGCT 2 cut(s) 112, 179
AlwI GGATC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 90, 161
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BbsI GAAGAC 2 cut(s) 60, 197
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 147
BciVI GTATCC 1 cut(s) 310
BcnI CCSGG 1 cut(s) 201
BfaI CTAG 2 cut(s) 123, 248
BfmI CTRYAG 2 cut(s) 78, 282
BfuAI ACCTGC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 147, 201
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 147, 201
BpiI GAAGAC 2 cut(s) 60, 197
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp143I GATC 3 cut(s) 13, 277, 332
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 13, 277, 332
Bst2UI CCWGG 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 3 cut(s) 16, 280, 335
BstMBI GATC 3 cut(s) 13, 277, 332
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 199
BstSFI CTRYAG 2 cut(s) 78, 282
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 2 cut(s) 60, 197
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 352
CviAII CATG 2 cut(s) 209, 256
CviJI RGCY 6 cut(s) 112, 133, 145, 168, 179, 198
CviKI_1 RGCY 6 cut(s) 112, 133, 145, 168, 179, 198
DdeI CTNAG 1 cut(s) 134
DpnI GATC 3 cut(s) 15, 279, 334
DpnII GATC 3 cut(s) 13, 277, 332
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 212, 259
FaiI YATR 6 cut(s) 80, 171, 184, 186, 210, 257
FatI CATG 2 cut(s) 208, 255
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 2 cut(s) 123, 248
GluI GCNGC 1 cut(s) 342
HapII CCGG 1 cut(s) 201
Hin1II CATG 2 cut(s) 212, 259
HinfI GANTC 3 cut(s) 56, 83, 95
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 90, 161
Hpy188I TCNGA 2 cut(s) 106, 308
Hpy188III TCNNGA 2 cut(s) 60, 123
HpyAV CCTTC 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 91, 188, 284, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 2 cut(s) 212, 259
Kzo9I GATC 3 cut(s) 13, 277, 332
LpnPI CCDG 8 cut(s) 43, 122, 132, 159, 214, 294, 330, 347
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 2 cut(s) 123, 248
MaeIII GTNAC 2 cut(s) 96, 265
MalI GATC 3 cut(s) 15, 279, 334
MboI GATC 3 cut(s) 13, 277, 332
MboII GAAGA 2 cut(s) 65, 197
MflI RGATCY 1 cut(s) 277
MluCI AATT 1 cut(s) 152
MlyI GAGTC 2 cut(s) 50, 104
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 123, 305
MseI TTAA 3 cut(s) 23, 158, 228
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 147, 201
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 201
NdeII GATC 3 cut(s) 13, 277, 332
NlaIII CATG 2 cut(s) 212, 259
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 245
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 277
SaqAI TTAA 3 cut(s) 23, 158, 228
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 13, 277, 332
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 2 cut(s) 147, 201
SetI ASST 6 cut(s) 79, 103, 114, 181, 235, 366
SfcI CTRYAG 2 cut(s) 78, 282
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 152
SspI AATATT 1 cut(s) 369
SspMI CTAG 2 cut(s) 123, 248
StyD4I CCNGG 2 cut(s) 145, 199
TasI AATT 1 cut(s) 152
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 23, 158, 228
Tru9I TTAA 3 cut(s) 23, 158, 228
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 197
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 2 cut(s) 123, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.