Rh1AG147500

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001355
Physical Location & Seq
Reverse (-)
27854168 .. 27854803
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG147500.1

Sequence Viewer

Length: 372 bp
ATGACTATGAGTGGCATAGATCAAGCTTTAAGTTCTTGTTCTCGGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACTCCTGTAGATTCAATGCAAGAGTTGCCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATAGCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATATCATGTCAAATGTAACGAAAAGAGATCATGCAGTTCAGTTCCTCATTGTAATCAGAAGCAAGGATTCCATTGGTTTGCGATTTTTGCTGCTTGTGGAAAGTTATTGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

123

Amino Acids

13.77

Weight (kDa)

9.79

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 78
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 26, 118, 185
AluI AGCT 3 cut(s) 26, 118, 185
ApeKI GCWGC 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 66, 203
BbvI GCAGC 1 cut(s) 333
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 2 cut(s) 129, 254
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 153, 207
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 153, 207
BpiI GAAGAC 2 cut(s) 66, 203
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 207
Bsp143I GATC 2 cut(s) 19, 283
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 19, 283
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 22, 286
BstMBI GATC 2 cut(s) 19, 283
BstMWI GCNNNNNNNGC 3 cut(s) 103, 191, 343
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 205
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 66, 203
BtsCI GGATG 1 cut(s) 175
CviAII CATG 3 cut(s) 215, 262, 287
CviJI RGCY 7 cut(s) 26, 118, 139, 151, 174, 185, 204
CviKI_1 RGCY 7 cut(s) 26, 118, 139, 151, 174, 185, 204
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 21, 285
DpnII GATC 2 cut(s) 19, 283
Eco32I GATATC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 259
FaeI CATG 3 cut(s) 218, 265, 290
FaiI YATR 8 cut(s) 8, 17, 177, 190, 192, 216, 263, 288
FatI CATG 3 cut(s) 214, 261, 286
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 2 cut(s) 129, 254
GluI GCNGC 1 cut(s) 347
HapII CCGG 1 cut(s) 207
Hin1II CATG 3 cut(s) 218, 265, 290
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 62, 89, 323
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 112, 314
Hpy188III TCNNGA 2 cut(s) 66, 129
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 4 cut(s) 97, 194, 290, 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 191, 343
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 3 cut(s) 218, 265, 290
Kzo9I GATC 2 cut(s) 19, 283
LpnPI CCDG 6 cut(s) 69, 96, 128, 138, 165, 220
Lsp1109I GCAGC 1 cut(s) 333
MaeI CTAG 2 cut(s) 129, 254
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 21, 285
MboI GATC 2 cut(s) 19, 283
MboII GAAGA 2 cut(s) 71, 203
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 2 cut(s) 129, 311
MseI TTAA 3 cut(s) 29, 164, 234
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 153, 207
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 103, 191, 343
NciI CCSGG 1 cut(s) 207
NdeII GATC 2 cut(s) 19, 283
NlaIII CATG 3 cut(s) 218, 265, 290
NlaIV GGNNCC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 89, 323
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 29, 164, 234
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 2 cut(s) 19, 283
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 153, 207
SetI ASST 4 cut(s) 28, 120, 187, 241
SfcI CTRYAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SspMI CTAG 2 cut(s) 129, 254
StyD4I CCNGG 2 cut(s) 151, 205
TaaI ACNGT 1 cut(s) 162
TfiI GAWTC 2 cut(s) 89, 323
Tru1I TTAA 3 cut(s) 29, 164, 234
Tru9I TTAA 3 cut(s) 29, 164, 234
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 128
XspI CTAG 2 cut(s) 129, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.