Rroxscaffold_4G00298410

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001355
Physical Location & Seq
Forward (+)
18270201 .. 18287623
17423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298410.1

Sequence Viewer

Length: 552 bp
ATGAGTGGCACAGATCAAGCGTTTAGTTCCAATTCTCAGTTTGCTTCCCCTGAAGACTCAAGAAGTAGGAAAACACCTATAGATTCAATGCAAGAGTCGCCTTCCGACCAGCTTCTAAAATCCAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTGAGGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCTGGTCTTCATGTCACAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAATCAAAAGAGATCCTGCAGCTCAGTTCCTCATTCTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGACTGGAATTTGTATTCGCAAGTCACAGTTTTAATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGACGAGTTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTATTTTGGATGTAAGCATCAAGATACTGGCCACCGTAGGCGAAGAAGATGGGGTAACACGCTGGCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

183

Amino Acids

20.42

Weight (kDa)

9.46

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 87
AjnI CCWGG 2 cut(s) 145, 199
AluBI AGCT 3 cut(s) 112, 179, 287
AluI AGCT 3 cut(s) 112, 179, 287
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 284, 341
ApoI RAATTY 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 161
BalI TGGCCA 1 cut(s) 509
BarI GAAGNNNNNNTAC 2 cut(s) 301, 333
BbsI GAAGAC 3 cut(s) 60, 197, 379
BbvI GCAGC 2 cut(s) 296, 328
BccI CCATC 2 cut(s) 158, 521
BciT130I CCWGG 2 cut(s) 147, 201
BciVI GTATCC 1 cut(s) 310
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 3 cut(s) 78, 282, 463
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 2 cut(s) 285, 342
BlsI GCNGC 2 cut(s) 286, 343
Bme1390I CCNGG 2 cut(s) 147, 201
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 147, 201
BmsI GCATC 1 cut(s) 504
BpiI GAAGAC 3 cut(s) 60, 197, 379
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 3 cut(s) 381, 480, 510
BseBI CCWGG 2 cut(s) 147, 201
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 3 cut(s) 169, 429, 493
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 3 cut(s) 50, 125, 302
BseNI ACTGG 3 cut(s) 381, 480, 510
BseXI GCAGC 2 cut(s) 296, 328
BshFI GGCC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 129
BsnI GGCC 1 cut(s) 509
Bsp143I GATC 3 cut(s) 13, 277, 332
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 3 cut(s) 49, 126, 301
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 272
BsrI ACTGG 3 cut(s) 381, 480, 510
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 13, 277, 332
Bst2UI CCWGG 2 cut(s) 147, 201
Bst4CI ACNGT 4 cut(s) 156, 401, 464, 514
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 3 cut(s) 36, 134, 288
BstF5I GGATG 3 cut(s) 169, 429, 493
BstKTI GATC 3 cut(s) 16, 280, 335
BstMBI GATC 3 cut(s) 13, 277, 332
BstMWI GCNNNNNNNGC 2 cut(s) 97, 185
BstNI CCWGG 2 cut(s) 147, 201
BstSCI CCNGG 2 cut(s) 145, 199
BstSFI CTRYAG 3 cut(s) 78, 282, 463
BstV1I GCAGC 2 cut(s) 296, 328
BstV2I GAAGAC 3 cut(s) 60, 197, 379
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 3 cut(s) 169, 429, 493
BtsIMutI CAGTG 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 542
CviAII CATG 2 cut(s) 209, 256
DdeI CTNAG 3 cut(s) 36, 134, 288
DpnI GATC 3 cut(s) 15, 279, 334
DpnII GATC 3 cut(s) 13, 277, 332
EaeI YGGCCR 1 cut(s) 507
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 145, 199
EcoRV GATATC 1 cut(s) 196
FaeI CATG 2 cut(s) 212, 259
FaiI YATR 6 cut(s) 80, 171, 184, 186, 210, 257
FatI CATG 2 cut(s) 208, 255
Fnu4HI GCNGC 2 cut(s) 285, 342
FokI GGATG 3 cut(s) 176, 436, 500
Fsp4HI GCNGC 2 cut(s) 285, 342
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 285, 342
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 2 cut(s) 212, 259
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 3 cut(s) 56, 83, 95
HpaI GTTAAC 1 cut(s) 460
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 152, 460
Hpy188I TCNGA 3 cut(s) 106, 308, 441
Hpy188III TCNNGA 3 cut(s) 60, 123, 499
Hpy8I GTNNAC 2 cut(s) 152, 460
HpyAV CCTTC 2 cut(s) 111, 425
HpyCH4III ACNGT 4 cut(s) 156, 401, 464, 514
HpyCH4V TGCA 4 cut(s) 91, 188, 284, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 185
HpyF3I CTNAG 3 cut(s) 36, 134, 288
Hsp92II CATG 2 cut(s) 212, 259
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 13, 277, 332
Lsp1109I GCAGC 2 cut(s) 296, 328
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 211, 395, 532
MalI GATC 3 cut(s) 15, 279, 334
MboI GATC 3 cut(s) 13, 277, 332
MboII GAAGA 5 cut(s) 65, 197, 384, 533, 536
MflI RGATCY 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 2 cut(s) 31, 380
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 50, 104
MmeI TCCRAC 3 cut(s) 129, 401, 408
MnlI CCTC 3 cut(s) 123, 153, 305
Mox20I TGGCCA 1 cut(s) 509
MscI TGGCCA 1 cut(s) 509
MseI TTAA 3 cut(s) 228, 405, 459
Msp20I TGGCCA 1 cut(s) 509
MspR9I CCNGG 2 cut(s) 147, 201
MvaI CCWGG 2 cut(s) 147, 201
MwoI GCNNNNNNNGC 2 cut(s) 97, 185
NdeII GATC 3 cut(s) 13, 277, 332
NlaIII CATG 2 cut(s) 212, 259
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 2 cut(s) 211, 395
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 286, 343
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
Psp6I CCWGG 2 cut(s) 145, 199
PspGI CCWGG 2 cut(s) 145, 199
PspN4I GGNNCC 1 cut(s) 245
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 277
SaqAI TTAA 3 cut(s) 228, 405, 459
SatI GCNGC 2 cut(s) 285, 342
Sau3AI GATC 3 cut(s) 13, 277, 332
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 2 cut(s) 147, 201
SetI ASST 6 cut(s) 79, 114, 181, 235, 289, 436
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 3 cut(s) 78, 282, 463
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 31, 380
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 145, 199
TaaI ACNGT 4 cut(s) 156, 401, 464, 514
TasI AATT 2 cut(s) 31, 380
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 228, 405, 459
Tru9I TTAA 3 cut(s) 228, 405, 459
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 2 cut(s) 211, 395
TseI GCWGC 2 cut(s) 284, 341
Tsp45I GTSAC 2 cut(s) 211, 395
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 480
XapI RAATTY 1 cut(s) 380
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.