Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001355

Physical Location & Seq

Genomic Coordinates Reverse (-)

28736317 .. 28736928

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG143200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGAATTTGTATTTGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTAGCTGTTTTGGATGTAAGCATTGAGATACTGGCCACTGTAGGTGAAGATGATGGGGTAACACGCTGGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

58

Amino Acids

6.62

Weight (kDa)

4.06

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01510
fragaria_vesca	FvH4_7g15180 FvH4_7g15180
malus_domestica	MD01G1070100.v1.1 MD07G1132400.v1.1
prunus_persica	Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1 Prupe.2G176300_v2.0.a1
pyrus_communis	pycom01g09930 pycom07g12920
rosa_chinensis	RchiOBHm_Chr1g0356181 RchiOBHm_Chr1g0357601 RchiOBHm_Chr1g0357901 RchiOBHm_Chr1g0357951 RchiOBHm_Chr1g0357961 RchiOBHm_Chr1g0358001 RchiOBHm_Chr1g0358011 RchiOBHm_Chr1g0358061 RchiOBHm_Chr1g0358071 RchiOBHm_Chr1g0358081 RchiOBHm_Chr1g0358101 RchiOBHm_Chr1g0358111 RchiOBHm_Chr1g0358151 RchiOBHm_Chr1g0358161 RchiOBHm_Chr5g0017371
rosa_laevigata	RLG00000027986 RLG00000028016 RLG00000028017 RLG00000028018
rosa_multiflora	Rmu_co8139580.1_g000001 Rmu_sc0005812.1_g000010 Rmu_sc0007849.1_g000010 Rmu_sc0010521.1_g000003
rosa_roxburghii	Rroxscaffold_4G00298390 Rroxscaffold_4G00298410
rosa_rugosa	Rorug01G0256800
rosa_samantha	Rh1AG147500 Rh1AG271100 Rh1AG273300 Rh1BG237900 Rh1CG138900 Rh1CG254800 Rh1DG265900 Rh1DG269100 Rh1DG269300 Rh1DG269400 Rh4CG143200 Rh5BG417100 Rh5CG441600 Rh6BG411700
rosa_wichuraiana	Rw1G024130 Rw1G024150 Rw1G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	5
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	134
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	88, 138
Bse1I	ACTGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	54, 118
BseNI	ACTGG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	26, 89, 139
BstC8I	GCNNGC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	54, 118
BstSFI	CTRYAG	2 cut(s)	88, 138
BsuRI	GGCC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	54, 118
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	167
CviJI	RGCY	4 cut(s)	79, 104, 134, 169
CviKI_1	RGCY	4 cut(s)	79, 104, 134, 169
EaeI	YGGCCR	1 cut(s)	132
FokI	GGATG	2 cut(s)	61, 125
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HpaI	GTTAAC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	3 cut(s)	26, 89, 139
HpyCH4V	TGCA	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	50, 65, 116, 151
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	20, 157
MboII	GAAGA	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	26, 33
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	84
SetI	ASST	3 cut(s)	61, 106, 145
SfcI	CTRYAG	2 cut(s)	88, 138
SgeI	CNNG	6 cut(s)	30, 77, 82, 92, 113, 143
Sse9I	AATT	1 cut(s)	5
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	26, 89, 139
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.