Rh1DG269400

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001355
Physical Location & Seq
Reverse (-)
48519939 .. 48521653
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG269400.1

Sequence Viewer

Length: 444 bp
ATGAATAATCGGTTGAGTCTAATAAGCCTTGAGCTGGAGCGAGTTCTGGTTAGTGTTTTATCTTACTACAAGGAGCGGTGCCGGGGCTTGGTTTTGGGGATTATCGGTAGATCTGCGGCGGCGAGGTCTATGGCTACTAGGAGATTGACCTTCAAGATCAGTGTGCTGTATTTTGATGTAGAGCTTTTGATTGATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCCCAATGTGTTAATACTTCCGCGCAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCAGATGAGGACGAGGAGGATAGTGAAATAGGTAATGAAAATGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

147

Amino Acids

16.6

Weight (kDa)

4.59

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 289
AciI CCGC 5 cut(s) 76, 116, 119, 236, 287
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 34, 88
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 3 cut(s) 34, 184, 206
AluI AGCT 3 cut(s) 34, 184, 206
AoxI GGCC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 83
BanI GGYRCC 1 cut(s) 78
BccI CCATC 4 cut(s) 188, 215, 238, 362
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 138
BglII AGATCT 1 cut(s) 110
BisI GCNGC 3 cut(s) 117, 120, 236
BlsI GCNGC 3 cut(s) 118, 121, 237
Bme1390I CCNGG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 56, 341
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 88
Bse3DI GCAATG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 226, 249
BseLI CCNNNNNNNGG 2 cut(s) 34, 88
BseMI GCAATG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 34, 88
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 110, 156
BspACI CCGC 5 cut(s) 76, 116, 119, 236, 287
BspANI GGCC 1 cut(s) 235
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 110, 156
BstF5I GGATG 2 cut(s) 226, 249
BstFNI CGCG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 113, 159
BstMBI GATC 2 cut(s) 110, 156
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 226, 249
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 166, 298, 439
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 1 cut(s) 252
CviJI RGCY 8 cut(s) 27, 34, 87, 134, 184, 206, 235, 319
CviKI_1 RGCY 8 cut(s) 27, 34, 87, 134, 184, 206, 235, 319
DpnI GATC 2 cut(s) 112, 158
DpnII GATC 2 cut(s) 110, 156
Eco57I CTGAAG 1 cut(s) 249
FaeI CATG 1 cut(s) 255
FaiI YATR 4 cut(s) 131, 253, 303, 316
FatI CATG 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 117, 120, 236
FokI GGATG 2 cut(s) 233, 256
Fsp4HI GCNGC 3 cut(s) 117, 120, 236
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 290
GluI GCNGC 3 cut(s) 117, 120, 236
GsaI CCCAGC 1 cut(s) 210
GsuI CTGGAG 2 cut(s) 56, 341
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 291
Hin1II CATG 1 cut(s) 255
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HinfI GANTC 1 cut(s) 16
HpaII CCGG 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 160, 224
HpyCH4V TGCA 2 cut(s) 296, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 255
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 110, 156
LmnI GCTCC 2 cut(s) 37, 73
LpnPI CCDG 5 cut(s) 20, 32, 95, 192, 305
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 138
MalI GATC 2 cut(s) 112, 158
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 110, 156
MboII GAAGA 2 cut(s) 320, 352
MflI RGATCY 1 cut(s) 110
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 4 cut(s) 117, 394, 400, 403
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 110, 156
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 118, 121, 237
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 233
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 117, 120, 236
Sau3AI GATC 2 cut(s) 110, 156
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 83
SetI ASST 6 cut(s) 36, 128, 152, 186, 208, 427
SfaNI GCATC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 5 cut(s) 76, 116, 119, 236, 287
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 81
TauI GCSGC 3 cut(s) 119, 122, 238
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 166, 298
TspDTI ATGAA 2 cut(s) 17, 444
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 2 cut(s) 166, 298
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.