Rh1DG269300

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001355
Physical Location & Seq
Reverse (-)
48518396 .. 48519557
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG269300.1

Sequence Viewer

Length: 417 bp
ATGCAAGAGTCGTCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTGTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAACGAAAAGAGATCCTGCAGCTCAGTTCCTTATTGTAATCAGAAGCAAGATAAATAGAAGAATGGAATTTGTATTCGCAAGTCACAGTTTTGATGTTTGGGAGAGTTGGATGTTGGAAGGTTCTCTGGACGAGTGTAGGCTGGTTAACTGTAGAAATCCACTGGCTGTTTTGGATGTAAGCATCGAGATACTGGCCACTGTAGGCGAAGAAGATGGGGTAACACGCTGGCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

138

Amino Acids

15.62

Weight (kDa)

6.74

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 245
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 25, 92, 200
AluI AGCT 3 cut(s) 25, 92, 200
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 74
BalI TGGCCA 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 6, 110
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 71, 386
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 2 cut(s) 36, 161
BfmI CTRYAG 3 cut(s) 195, 328, 378
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 60, 114
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 60, 114
BmsI GCATC 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 6, 110
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 345, 375
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 3 cut(s) 82, 294, 358
BseMII CTCAG 2 cut(s) 38, 215
BseNI ACTGG 2 cut(s) 345, 375
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 2 cut(s) 39, 214
BspLI GGNNCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 345, 375
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 69, 266, 329, 379
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 47, 201
BstF5I GGATG 3 cut(s) 82, 294, 358
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 58, 112
BstSFI CTRYAG 3 cut(s) 195, 328, 378
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 6, 110
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 3 cut(s) 82, 294, 358
BtsIMutI CAGTG 2 cut(s) 338, 375
Cac8I GCNNGC 1 cut(s) 407
CviAII CATG 2 cut(s) 122, 169
DdeI CTNAG 2 cut(s) 47, 201
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 372
Eco32I GATATC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 58
EcoRV GATATC 1 cut(s) 109
FaeI CATG 2 cut(s) 125, 172
FaiI YATR 5 cut(s) 84, 97, 99, 123, 170
FatI CATG 2 cut(s) 121, 168
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 3 cut(s) 89, 301, 365
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 36, 161
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 114
Hin1II CATG 2 cut(s) 125, 172
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 1 cut(s) 8
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 65, 325
Hpy188I TCNGA 2 cut(s) 19, 221
Hpy188III TCNNGA 3 cut(s) 36, 305, 364
Hpy8I GTNNAC 2 cut(s) 65, 325
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 4 cut(s) 69, 266, 329, 379
HpyCH4V TGCA 3 cut(s) 4, 101, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 47, 201
Hsp92II CATG 2 cut(s) 125, 172
KspAI GTTAAC 1 cut(s) 325
Kzo9I GATC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 36, 161
MaeIII GTNAC 3 cut(s) 178, 260, 397
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 5 cut(s) 6, 110, 249, 398, 401
MflI RGATCY 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 3 cut(s) 42, 266, 273
MnlI CCTC 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 374
MseI TTAA 3 cut(s) 71, 141, 324
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 60, 114
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 114
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 125, 172
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 3 cut(s) 71, 141, 324
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 60, 114
SetI ASST 5 cut(s) 27, 94, 148, 202, 301
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 3 cut(s) 195, 328, 378
Sse9I AATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 36, 161
StyD4I CCNGG 2 cut(s) 58, 112
TaaI ACNGT 4 cut(s) 69, 266, 329, 379
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 245
Tru1I TTAA 3 cut(s) 71, 141, 324
Tru9I TTAA 3 cut(s) 71, 141, 324
TscAI CASTG 2 cut(s) 345, 382
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 2 cut(s) 345, 382
XapI RAATTY 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 35
XspI CTAG 2 cut(s) 36, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.