RLG00000028016

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001355
Physical Location & Seq
Reverse (-)
17739003 .. 17739880
878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028016

Sequence Viewer

Length: 399 bp
ATGCAAGAGTCACCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGACGGCTATGTTGTAGCTCTATATGCAAGAGATAGCCCCGGTCTTCATGTTGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATGTCAAATGTAACGAAAAGAGATCCTGCAGCTCAGTTCCCCATTGTAATCAGAAGCAAGGATACCATTGGTCTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATGCACAGTAAGAGTAATGGTCTCCTCCCCCTCCCCGCAACTTTAGACATGTCAACAAAGATAGATTACTGGTGTATAGGAATTCCATATGCAGGCACCTTGTGCTTCTTTCAAGTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

133

Amino Acids

14.5

Weight (kDa)

9.67

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AciI CCGC 1 cut(s) 312
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 389
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 3 cut(s) 25, 92, 200
AluI AGCT 3 cut(s) 25, 92, 200
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 197, 254
ApoI RAATTY 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 2 cut(s) 3, 74
BanI GGYRCC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 209, 241
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 60
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 2 cut(s) 36, 161
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 2 cut(s) 198, 255
BlsI GCNGC 2 cut(s) 199, 256
Bme1390I CCNGG 2 cut(s) 60, 114
BmiI GGNNCC 2 cut(s) 158, 373
BmrFI CCNGG 2 cut(s) 60, 114
BmsI GCATC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 38, 215
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 209, 241
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 190, 245
BspACI CCGC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 39, 214
BspLI GGNNCC 2 cut(s) 158, 373
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 190, 245
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 69, 284
BstAPI GCANNNNNTGC 1 cut(s) 378
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 47, 201
BstKTI GATC 2 cut(s) 193, 248
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 190, 245
BstMWI GCNNNNNNNGC 2 cut(s) 98, 378
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 58, 112
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 209, 241
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 370
CviAII CATG 3 cut(s) 122, 169, 325
CviJI RGCY 7 cut(s) 25, 46, 58, 81, 92, 111, 200
CviKI_1 RGCY 7 cut(s) 25, 46, 58, 81, 92, 111, 200
DdeI CTNAG 2 cut(s) 47, 201
DpnI GATC 2 cut(s) 192, 247
DpnII GATC 2 cut(s) 190, 245
DraIII CACNNNGTG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 125, 172, 328
FatI CATG 3 cut(s) 121, 168, 324
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 198, 255
Fsp4HI GCNGC 2 cut(s) 198, 255
FspBI CTAG 2 cut(s) 36, 161
GluI GCNGC 2 cut(s) 198, 255
HapII CCGG 1 cut(s) 114
Hin1II CATG 3 cut(s) 125, 172, 328
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 3, 74
Hpy166II GTNNAC 2 cut(s) 65, 330
Hpy188I TCNGA 2 cut(s) 19, 221
Hpy188III TCNNGA 1 cut(s) 36
Hpy8I GTNNAC 2 cut(s) 65, 330
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 2 cut(s) 69, 284
HpyCH4V TGCA 7 cut(s) 4, 101, 128, 197, 274, 280, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 378
HpyF3I CTNAG 2 cut(s) 47, 201
Hsp92II CATG 3 cut(s) 125, 172, 328
Kzo9I GATC 2 cut(s) 190, 245
LpnPI CCDG 8 cut(s) 35, 45, 72, 127, 207, 243, 331, 354
Lsp1109I GCAGC 2 cut(s) 209, 241
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 36, 161
MaeIII GTNAC 2 cut(s) 9, 178
MalI GATC 2 cut(s) 192, 247
MboI GATC 2 cut(s) 190, 245
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 357
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 36, 311, 317
MseI TTAA 2 cut(s) 71, 141
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 60, 114
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 98, 378
NciI CCSGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 190, 245
NlaIII CATG 3 cut(s) 125, 172, 328
NlaIV GGNNCC 2 cut(s) 158, 373
NmuCI GTSAC 1 cut(s) 9
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PkrI GCNGC 2 cut(s) 199, 256
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PscI ACATGT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 158, 373
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 2 cut(s) 71, 141
SatI GCNGC 2 cut(s) 198, 255
Sau3AI GATC 2 cut(s) 190, 245
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 60, 114
SetI ASST 6 cut(s) 16, 27, 94, 148, 202, 377
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 357
SsiI CCGC 1 cut(s) 312
SspMI CTAG 2 cut(s) 36, 161
StyD4I CCNGG 2 cut(s) 58, 112
TaaI ACNGT 2 cut(s) 69, 284
TasI AATT 1 cut(s) 357
Tru1I TTAA 2 cut(s) 71, 141
Tru9I TTAA 2 cut(s) 71, 141
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 2 cut(s) 197, 254
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 1 cut(s) 110
XapI RAATTY 1 cut(s) 357
XbaI TCTAGA 1 cut(s) 35
XceI RCATGY 1 cut(s) 328
XspI CTAG 2 cut(s) 36, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.