RLG00000028017

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001355
Physical Location & Seq
Reverse (-)
17740255 .. 17743435
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028017

Sequence Viewer

Length: 492 bp
ATGAAAGAGTGGAGGGTGGAAGAAGGAGCCATGCCTCGTCTCCGCAAATTGTGCATTGATTACTGCAAAGCATTGAGGGCAGTTCCAGATGGGCTTCAATACGTTGCTACCCTCAAGGAGTTGACTGTCAAGAATATGCCAAGGGAATTCTGTAGTAGGCTTAGGGAAGACGGAGCATTTCTTGTAAACACGGGTAGCAGTCAACTGTTGGATGATTGTTTTGTGAAACAGCTTTTGATTGATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCGATGGATGGAAACATGGGTTAAGGAGATGCCCAATGTGTTGATATTTCCGCACAGTGCAGATTATAGTGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGGGATGAAAATGAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

164

Amino Acids

18.59

Weight (kDa)

4.54

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 56 - 115 4.6e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 286
AciI CCGC 3 cut(s) 43, 284, 335
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 232, 254
AluI AGCT 2 cut(s) 232, 254
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 6 cut(s) 83, 236, 263, 282, 286, 410
BcoDI GTCTC 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 5 cut(s) 217, 274, 297, 457, 481
BseRI GAGGAG 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 283
BspACI CCGC 3 cut(s) 43, 284, 335
BspANI GGCC 1 cut(s) 283
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 127, 207, 341
BstAPI GCANNNNNTGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 5 cut(s) 217, 274, 297, 457, 481
BstFNI CGCG 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 3 cut(s) 51, 77, 260
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 5 cut(s) 217, 274, 297, 457, 481
BtsIMutI CAGTG 2 cut(s) 346, 487
Cfr13I GGNCC 1 cut(s) 281
CviAII CATG 2 cut(s) 31, 300
CviJI RGCY 7 cut(s) 29, 94, 160, 232, 254, 283, 367
CviKI_1 RGCY 7 cut(s) 29, 94, 160, 232, 254, 283, 367
DdeI CTNAG 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 34, 303
FaiI YATR 5 cut(s) 32, 137, 301, 351, 364
FatI CATG 2 cut(s) 30, 299
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 5 cut(s) 224, 281, 304, 464, 488
Fsp4HI GCNGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 283
Hin1II CATG 2 cut(s) 34, 303
HincII GTYRAC 2 cut(s) 123, 203
HindII GTYRAC 2 cut(s) 123, 203
Hpy166II GTNNAC 3 cut(s) 123, 187, 203
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 2 cut(s) 86, 130
Hpy8I GTNNAC 3 cut(s) 123, 187, 203
HpyAV CCTTC 2 cut(s) 17, 272
HpyCH4III ACNGT 3 cut(s) 127, 207, 341
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 54, 66, 344, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 77, 260
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 2 cut(s) 34, 303
LmnI GCTCC 2 cut(s) 26, 173
LpnPI CCDG 3 cut(s) 99, 240, 353
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 102
MboII GAAGA 4 cut(s) 32, 179, 368, 400
MluCI AATT 2 cut(s) 47, 146
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 6, 45, 69, 122, 442, 448, 451
MseI TTAA 1 cut(s) 306
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 51, 77, 260
NlaIII CATG 2 cut(s) 34, 303
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 284
Sau96I GGNCC 1 cut(s) 281
SetI ASST 3 cut(s) 105, 234, 256
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 47, 146
SsiI CCGC 3 cut(s) 43, 284, 335
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 3 cut(s) 127, 207, 341
TaiI ACGT 1 cut(s) 105
TasI AATT 2 cut(s) 47, 146
TauI GCSGC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 17, 492
TspGWI ACGGA 2 cut(s) 186, 382
TspRI CASTG 1 cut(s) 346
XapI RAATTY 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.