RchiOBHm_Chr1g0358061

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001355
Physical Location & Seq
Reverse (-)
50193453 .. 50194335
883 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58325

Sequence Viewer

Length: 570 bp
ATGAGTGGTACAGATCAAGCGTTAAGTTCCAGTTCTCGGTTTGCTTACCCTGAAGACTCAAGAAGTAGGAAAACACCTATAGAATCAATGCAAGAGTCGTCTTCTGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTAGATACCATATCAAATGTAACAAAAAGAGATCCTGCAGCTCAGTTCCTTATTGTAATCAGAAGCAAGGATTCCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTATCCCTCCAATGATGCCTCCCAACGCTCCTATGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACAGCAAATGTGTGTGATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

189

Amino Acids

20.9

Weight (kDa)

10.45

Isoelectric Point (pI)

65.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 436
AciI CCGC 1 cut(s) 470
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 36, 436
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 4 cut(s) 112, 179, 287, 567
AluI AGCT 4 cut(s) 112, 179, 287, 567
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 284, 341
ApoI RAATTY 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 439
BauI CACGAG 1 cut(s) 528
BbsI GAAGAC 3 cut(s) 60, 93, 197
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 296, 328
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 147
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 2 cut(s) 123, 248
BfmI CTRYAG 2 cut(s) 78, 282
BisI GCNGC 3 cut(s) 285, 342, 470
BlsI GCNGC 3 cut(s) 286, 343, 471
Bme1390I CCNGG 2 cut(s) 147, 201
BmiI GGNNCC 2 cut(s) 245, 441
BmrFI CCNGG 2 cut(s) 147, 201
BmsI GCATC 1 cut(s) 477
BpiI GAAGAC 3 cut(s) 60, 93, 197
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 199, 452
BsaWI WCCGGW 1 cut(s) 522
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 436
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 199, 452
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 36, 436
BseMII CTCAG 2 cut(s) 125, 302
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 2 cut(s) 296, 328
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 2 cut(s) 201, 523
BslI CCNNNNNNNGG 2 cut(s) 36, 436
BsmAI GTCTC 1 cut(s) 538
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 512, 535
Bsp143I GATC 4 cut(s) 13, 277, 332, 561
Bsp19I CCATGG 1 cut(s) 452
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 126, 301
BspLI GGNNCC 2 cut(s) 245, 441
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 439
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 199, 452
BssMI GATC 4 cut(s) 13, 277, 332, 561
BssSI CACGAG 1 cut(s) 528
BssT1I CCWWGG 1 cut(s) 452
Bst2BI CACGAG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 156, 401
BstDEI CTNAG 2 cut(s) 134, 288
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 4 cut(s) 16, 280, 335, 564
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 4 cut(s) 13, 277, 332, 561
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 199
BstSFI CTRYAG 2 cut(s) 78, 282
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 296, 328
BstV2I GAAGAC 3 cut(s) 60, 93, 197
BstX2I RGATCY 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 209, 412, 453
CviJI RGCY 9 cut(s) 112, 133, 145, 168, 179, 287, 410, 457, 567
CviKI_1 RGCY 9 cut(s) 112, 133, 145, 168, 179, 287, 410, 457, 567
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 134, 288
DpnI GATC 4 cut(s) 15, 279, 334, 563
DpnII GATC 4 cut(s) 13, 277, 332, 561
Eco130I CCWWGG 1 cut(s) 452
Eco32I GATATC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 3 cut(s) 212, 415, 456
FatI CATG 3 cut(s) 208, 411, 452
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 285, 342, 470
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 285, 342, 470
FspBI CTAG 2 cut(s) 123, 248
GluI GCNGC 3 cut(s) 285, 342, 470
HaeIII GGCC 1 cut(s) 457
HapII CCGG 2 cut(s) 201, 523
Hin1II CATG 3 cut(s) 212, 415, 456
HinfI GANTC 5 cut(s) 56, 83, 95, 317, 415
HpaII CCGG 2 cut(s) 201, 523
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 106, 308
Hpy188III TCNNGA 3 cut(s) 60, 123, 528
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 156, 401
HpyCH4V TGCA 4 cut(s) 91, 188, 284, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 134, 288
Hsp92II CATG 3 cut(s) 212, 415, 456
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 4 cut(s) 13, 277, 332, 561
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 2 cut(s) 296, 328
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 123, 248
MaeIII GTNAC 2 cut(s) 265, 525
MalI GATC 4 cut(s) 15, 279, 334, 563
MboI GATC 4 cut(s) 13, 277, 332, 561
MboII GAAGA 4 cut(s) 65, 93, 197, 384
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 512, 535
MluCI AATT 1 cut(s) 380
MlyI GAGTC 2 cut(s) 50, 104
MnlI CCTC 7 cut(s) 123, 453, 459, 468, 489, 501, 530
MseI TTAA 3 cut(s) 23, 158, 228
MslI CAYNNNNRTG 1 cut(s) 451
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 2 cut(s) 201, 523
MspR9I CCNGG 2 cut(s) 147, 201
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 452
NdeII GATC 4 cut(s) 13, 277, 332, 561
NlaIII CATG 3 cut(s) 212, 415, 456
NlaIV GGNNCC 2 cut(s) 245, 441
NmuCI GTSAC 1 cut(s) 525
PfeI GAWTC 3 cut(s) 83, 317, 415
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 3 cut(s) 286, 343, 471
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 2 cut(s) 245, 441
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 3 cut(s) 23, 158, 228
SatI GCNGC 3 cut(s) 285, 342, 470
Sau3AI GATC 4 cut(s) 13, 277, 332, 561
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 2 cut(s) 147, 201
SduI GDGCHC 2 cut(s) 512, 535
SetI ASST 9 cut(s) 79, 114, 181, 235, 289, 436, 445, 451, 569
SfaNI GCATC 1 cut(s) 477
SfcI CTRYAG 2 cut(s) 78, 282
SmiMI CAYNNNNRTG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 380
SsiI CCGC 1 cut(s) 470
SspMI CTAG 2 cut(s) 123, 248
StyD4I CCNGG 2 cut(s) 145, 199
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 156, 401
TaqI TCGA 1 cut(s) 460
TasI AATT 1 cut(s) 380
TauI GCSGC 1 cut(s) 472
TfiI GAWTC 3 cut(s) 83, 317, 415
Tru1I TTAA 3 cut(s) 23, 158, 228
Tru9I TTAA 3 cut(s) 23, 158, 228
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 2 cut(s) 284, 341
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 2 cut(s) 197, 428
Van91I CCANNNNNTGG 1 cut(s) 436
XapI RAATTY 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 2 cut(s) 123, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.