RLG00000027986

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001355
Physical Location & Seq
Forward (+)
17538972 .. 17541583
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027986

Sequence Viewer

Length: 1179 bp
ATGCTTGAGAAGCTGCCACACTTGAGAGCGCTTTACCTTCAAGGTTTTGTTTTCTCCGGCCTTCCTTCGAACACACTGGTTTGCAGCAATCGAGGATTTCCCAATCTTGAATTTCTTTCCCTCGGAGAGTTGCCAGAAATGAAAGAGTGGAGGGTGGAGGAAGGAGCCATGCCTCGTCTCCGCAGATTGTGCATTCATTGGTGCTGGGAATTGAGGGCAGTTCCAGATGGGCTTCAATACGTTGCTACCCTCAAGGAGTTGACTGTCAAGCTGATGCCAAGTGAATTCTGTACGAGGCTTGGGAAAGACGGGGAGGATTTCCACAAAATCAAACATGTACCTTCTCTTATCATTACAGGAACTGAAGAGAGAGACTTGAGGGACAAGGAGCAAGAGGAGTGGCTGAAGACTGACATGTCTGGACATGTCTCAAATCTGCGGTGGCGACGTCTCTGGCTACTAGGAGCTTGGCCTTCAAGATATATCAGTGTGCTGTATTTTGATGTAGAGGTGAACGGAAAAGTGAGTAGGTCTTATGGCTTTCCTTCTGCTGCCCAAAAGATGGATACTCTAAATGACTTACTTGCTGCGAGTGACCTCATTTCGCTTCATTGTGCTCTGACAAATGAAACAATTCAGATTCTGAATGCTGAATGTTTAGAGCACGTAAAGCCTGGAGCATTTCTTGTAAACACGGGTAGCAGTCAGCTGTTGGATGATTGTTTTGTGAAACAGCTTTTGATTTATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGGAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCTCAATGTATTGATACTTCCGCACAGTGCAGATTATAGCCAAGAAGTATGGCCGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAATGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCGTGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGTCTCCTAGCCAGCAAGGTTCGGGTTTGTCTCAAAATTCAACTACTCGGTCTGATGGAAGACGAAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

393

Amino Acids

44.26

Weight (kDa)

5.01

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 1 - 94 7.8e-07 Leucine-rich repeat region
2-Hacid_dh_C PF02826 183 - 283 1.6e-17 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 415
AatII GACGTC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 562
AciI CCGC 4 cut(s) 181, 439, 788, 839
AcoI YGGCCR 1 cut(s) 869
AcsI RAATTY 3 cut(s) 110, 284, 1141
AcuI CTGAAG 2 cut(s) 384, 425
AcyI GRCGYC 1 cut(s) 448
AfaI GTAC 2 cut(s) 292, 339
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 562
AflIII ACRYGT 3 cut(s) 334, 414, 424
AgsI TTSAA 5 cut(s) 41, 110, 236, 477, 1146
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 8 cut(s) 13, 271, 467, 709, 736, 758, 1027, 1077
AluI AGCT 8 cut(s) 13, 271, 467, 709, 736, 758, 1027, 1077
Alw21I GWGCWC 2 cut(s) 619, 666
Alw26I GTCTC 6 cut(s) 182, 366, 433, 455, 1113, 1140
AlwNI CAGNNNCTG 2 cut(s) 362, 643
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 4 cut(s) 58, 470, 785, 869
ApeKI GCWGC 4 cut(s) 13, 84, 551, 587
ApoI RAATTY 3 cut(s) 110, 284, 1141
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 523, 989
AsuII TTCGAA 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 819, 851
BbsI GAAGAC 2 cut(s) 413, 1171
Bbv12I GWGCWC 2 cut(s) 619, 666
BbvI GCAGC 3 cut(s) 96, 538, 574
BccI CCATC 6 cut(s) 221, 556, 767, 790, 914, 1154
BciT130I CCWGG 1 cut(s) 675
BciVI GTATCC 1 cut(s) 559
BcoDI GTCTC 6 cut(s) 182, 366, 433, 455, 1113, 1140
BfaI CTAG 2 cut(s) 461, 1113
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 5 cut(s) 14, 85, 552, 588, 788
BlsI GCNGC 5 cut(s) 15, 86, 553, 589, 789
Bme1390I CCNGG 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 2 cut(s) 264, 807
BpiI GAAGAC 2 cut(s) 413, 1171
BpmI CTGGAG 3 cut(s) 696, 801, 1025
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 4 cut(s) 26, 43, 236, 397
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 2 cut(s) 81, 1008
Bse3DI GCAATG 1 cut(s) 797
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 4 cut(s) 721, 778, 801, 961
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 797
BseNI ACTGG 2 cut(s) 81, 1008
BseRI GAGGAG 2 cut(s) 410, 974
BseXI GCAGC 3 cut(s) 96, 538, 574
BseYI CCCAGC 2 cut(s) 204, 758
BsgI GTGCAG 1 cut(s) 867
BshFI GGCC 4 cut(s) 60, 472, 787, 871
BsiHKAI GWGCWC 2 cut(s) 619, 666
BsiSI CCGG 2 cut(s) 57, 872
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 6 cut(s) 182, 366, 433, 455, 1113, 1140
BsmBI CGTCTC 2 cut(s) 182, 455
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 2 cut(s) 192, 652
BsnI GGCC 4 cut(s) 60, 472, 787, 871
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 619, 666
BspACI CCGC 4 cut(s) 181, 439, 788, 839
BspANI GGCC 4 cut(s) 60, 472, 787, 871
BspLI GGNNCC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 797
BsrI ACTGG 2 cut(s) 81, 1008
BssECI CCNNGG 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 265, 845
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 667
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 1118
BstF5I GGATG 4 cut(s) 721, 778, 801, 961
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 6 cut(s) 182, 366, 433, 455, 1113, 1140
BstMWI GCNNNNNNNGC 4 cut(s) 10, 189, 670, 764
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 3 cut(s) 338, 418, 428
BstSCI CCNGG 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 96, 538, 574
BstV2I GAAGAC 2 cut(s) 413, 1171
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 4 cut(s) 60, 472, 787, 871
BtsCI GGATG 4 cut(s) 721, 778, 801, 961
BtsIMutI CAGTG 3 cut(s) 74, 493, 850
Cac8I GCNNGC 1 cut(s) 1118
CaiI CAGNNNCTG 2 cut(s) 362, 643
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 785
Csp6I GTAC 2 cut(s) 291, 338
CspCI CAANNNNNGTGG 2 cut(s) 380, 415
CviAII CATG 5 cut(s) 169, 335, 415, 425, 804
CviQI GTAC 2 cut(s) 291, 338
DrdI GACNNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 869
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 384, 425
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 673
Esp3I CGTCTC 2 cut(s) 182, 455
FaeI CATG 5 cut(s) 172, 338, 418, 428, 807
FaqI GGGAC 1 cut(s) 395
FatI CATG 5 cut(s) 168, 334, 414, 424, 803
Fnu4HI GCNGC 5 cut(s) 14, 85, 552, 588, 788
FokI GGATG 4 cut(s) 728, 785, 808, 968
Fsp4HI GCNGC 5 cut(s) 14, 85, 552, 588, 788
FspBI CTAG 2 cut(s) 461, 1113
GlaI GCGC 1 cut(s) 30
GluI GCNGC 5 cut(s) 14, 85, 552, 588, 788
GsaI CCCAGC 2 cut(s) 208, 762
GsuI CTGGAG 3 cut(s) 696, 801, 1025
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 60, 472, 787, 871
HapII CCGG 2 cut(s) 57, 872
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 5 cut(s) 172, 338, 418, 428, 807
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 1 cut(s) 640
HpaII CCGG 2 cut(s) 57, 872
HphI GGTGA 2 cut(s) 523, 989
Hpy166II GTNNAC 3 cut(s) 261, 514, 691
Hpy188I TCNGA 7 cut(s) 125, 621, 639, 645, 949, 997, 1159
Hpy188III TCNNGA 5 cut(s) 107, 224, 420, 477, 1070
Hpy8I GTNNAC 3 cut(s) 261, 514, 691
Hpy99I CGWCG 1 cut(s) 450
HpyAV CCTTC 7 cut(s) 47, 71, 75, 155, 351, 483, 555
HpyCH4III ACNGT 2 cut(s) 265, 845
HpyCH4IV ACGT 3 cut(s) 240, 448, 666
HpyCH4V TGCA 5 cut(s) 84, 192, 848, 904, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 189, 670, 764
HpySE526I ACGT 3 cut(s) 240, 448, 666
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 5 cut(s) 172, 338, 418, 428, 807
HspAI GCGC 1 cut(s) 29
LmnI GCTCC 6 cut(s) 164, 388, 464, 677, 1006, 1082
Lsp1109I GCAGC 3 cut(s) 96, 538, 574
LweI GCATC 2 cut(s) 264, 807
MaeI CTAG 2 cut(s) 461, 1113
MaeII ACGT 3 cut(s) 240, 448, 666
MaeIII GTNAC 1 cut(s) 593
MboII GAAGA 4 cut(s) 377, 418, 904, 1176
MhlI GDGCHC 2 cut(s) 619, 666
MluCI AATT 6 cut(s) 110, 209, 284, 633, 1043, 1141
MmeI TCCRAC 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 1 cut(s) 1046
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 2 cut(s) 57, 872
MspR9I CCNGG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 192, 652
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 4 cut(s) 10, 189, 670, 764
NlaIII CATG 5 cut(s) 172, 338, 418, 428, 807
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 593
NspI RCATGY 3 cut(s) 338, 418, 428
NspV TTCGAA 1 cut(s) 68
PciI ACATGT 3 cut(s) 334, 414, 424
PctI GAATGC 2 cut(s) 192, 652
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 640
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 5 cut(s) 15, 86, 553, 589, 789
Ppu21I YACGTR 1 cut(s) 667
PscI ACATGT 3 cut(s) 334, 414, 424
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 2 cut(s) 204, 758
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 785
PstNI CAGNNNCTG 2 cut(s) 362, 643
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 2 cut(s) 292, 339
RsaNI GTAC 2 cut(s) 291, 338
SaqAI TTAA 1 cut(s) 1046
SatI GCNGC 5 cut(s) 14, 85, 552, 588, 788
Sau96I GGNCC 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 2 cut(s) 619, 666
SfaNI GCATC 2 cut(s) 264, 807
SfuI TTCGAA 1 cut(s) 68
SmlI CTYRAG 4 cut(s) 5, 22, 251, 376
SmoI CTYRAG 4 cut(s) 5, 22, 251, 376
Sse9I AATT 6 cut(s) 110, 209, 284, 633, 1043, 1141
SsiI CCGC 4 cut(s) 181, 439, 788, 839
SspMI CTAG 2 cut(s) 461, 1113
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 2 cut(s) 265, 845
TaiI ACGT 3 cut(s) 243, 451, 669
TaqI TCGA 2 cut(s) 68, 91
TaqII GACCGA 1 cut(s) 1143
TasI AATT 6 cut(s) 110, 209, 284, 633, 1043, 1141
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 1 cut(s) 1046
Tru9I TTAA 1 cut(s) 1046
TscAI CASTG 3 cut(s) 81, 493, 850
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 4 cut(s) 13, 84, 551, 587
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 6 cut(s) 155, 185, 599, 642, 996, 1002
TspGWI ACGGA 2 cut(s) 531, 886
TspRI CASTG 3 cut(s) 81, 493, 850
Van91I CCANNNNNTGG 1 cut(s) 562
XapI RAATTY 3 cut(s) 110, 284, 1141
XceI RCATGY 3 cut(s) 338, 418, 428
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 2 cut(s) 461, 1113
ZraI GACGTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.