Rroxscaffold_4G00298390

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
18266971 .. 18271719
4749 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00298390.1

Sequence Viewer

Length: 453 bp
ATGAGCGCGTCGGGTGCCAATGGAACTTTAGCTGGGTGTGCTTTGGATGGTGCTGAAGGGCCGCAATGGATGGAAGCATGGGTAAAGGAGATGCTCAATGTATTGATACTTCCGCACAGTGCAGATTATAGCGAAGAAGTATGGCTGGAGATAAGGGAGAAAGCAATATCCGTATTGCAGACATTCTTCTTTGATGGGGTTGTTCCAAAAAGTGTTGTATCTGATGAGGATGAGGAGGAAAGTGAAATAGGTGATGAAAATGAACCCTCTGATAAACTGGAGCAAGAAAATCCCTTACAGCTAACCCTTGTTCAGCAATTAACTGATGTTAGTCATGCAAGTCCAGAAAGCTCCCTGAATAAAGAAACCAATCAATCCAAGTCTCCTAGCCAGCAAGGTTCGTGTTTGTCTCAAAATTCAACTACTCGGTCTGACGGAAGACGAAGTAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.44

Weight (kDa)

4.29

Isoelectric Point (pI)

73.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 8
AciI CCGC 2 cut(s) 62, 113
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 420
AluBI AGCT 3 cut(s) 32, 301, 351
AluI AGCT 3 cut(s) 32, 301, 351
Alw26I GTCTC 2 cut(s) 387, 414
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 14
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbsI GAAGAC 1 cut(s) 445
BccI CCATC 3 cut(s) 41, 64, 188
BcoDI GTCTC 2 cut(s) 387, 414
BfaI CTAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 445
BpmI CTGGAG 2 cut(s) 167, 299
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 71
BseGI GGATG 3 cut(s) 52, 75, 235
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 387, 414
BsnI GGCC 1 cut(s) 61
BspACI CCGC 2 cut(s) 62, 113
BspANI GGCC 1 cut(s) 61
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 71
BsrI ACTGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 392
BstF5I GGATG 3 cut(s) 52, 75, 235
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstMAI GTCTC 2 cut(s) 387, 414
BstMWI GCNNNNNNNGC 2 cut(s) 14, 38
BstUI CGCG 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 52, 75, 235
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 59
CviAII CATG 2 cut(s) 78, 335
CviJI RGCY 6 cut(s) 32, 61, 145, 301, 351, 390
CviKI_1 RGCY 6 cut(s) 32, 61, 145, 301, 351, 390
Eco57I CTGAAG 1 cut(s) 75
FaeI CATG 2 cut(s) 81, 338
FaiI YATR 4 cut(s) 79, 129, 142, 336
FatI CATG 2 cut(s) 77, 334
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 3 cut(s) 59, 82, 242
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 167, 299
HaeIII GGCC 1 cut(s) 61
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 81, 338
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 223, 271, 433
Hpy188III TCNNGA 1 cut(s) 344
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 122, 178, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 38
Hsp92II CATG 2 cut(s) 81, 338
HspAI GCGC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 280, 356
LpnPI CCDG 6 cut(s) 18, 131, 263, 357, 368, 404
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 387
MboII GAAGA 3 cut(s) 146, 178, 450
MluCI AATT 2 cut(s) 317, 415
MnlI CCTC 4 cut(s) 220, 226, 229, 277
MseI TTAA 1 cut(s) 320
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 14, 38
NlaIII CATG 2 cut(s) 81, 338
NlaIV GGNNCC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 1 cut(s) 62
Sau96I GGNCC 1 cut(s) 59
SetI ASST 5 cut(s) 34, 253, 303, 353, 400
SfaNI GCATC 1 cut(s) 81
Sse9I AATT 2 cut(s) 317, 415
SsiI CCGC 2 cut(s) 62, 113
SspMI CTAG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 119
TaqII GACCGA 1 cut(s) 417
TasI AATT 2 cut(s) 317, 415
TauI GCSGC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 270, 276
TspGWI ACGGA 2 cut(s) 160, 450
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 415
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.