Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009790

Physical Location & Seq

Genomic Coordinates Forward (+)

49840403 .. 49840871

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGCTGTGCGGTTCGTTGGAGAGGATGGAAGGCGTTTGGCTTAATGGGAATGCGGGGATGGAGAATGATTCCAAGACGGGTTGGAGTATGGATTGTTATATGGCTGCGTCTATTAATTCCGGCTCTTCGGCGTTTTTCCAGCCGAAACTCGAGGTTTCGGCGCCGTCTATAGAGGTTTATATCGCCGGGTGCTGCTCTGGTGTGCCAGTGATATTGACAAAGACAATACATATTAGTCCCAGGCGGAAGTGCCCAAGGCATGCCACTCTAGATGCTATTCCTGAGGAGGAGGAGGAGGAGGAGGAGGTCGGGAAGGAGCATAGCAAGAGCTGTAATGGGTTATTTCGTCAACCCATTAATGGGTTGGATTTTAGGACTTCTACAAAATGTATTCCATTCACACGCTCTAATGGGTTGGATTTTAGGACTTGTACAAAATGTATTCCATTCAAAACGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

5.94

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01500
fragaria_vesca	FvH4_7g15170
malus_domestica	MD01G1070200.v1.1 MD07G1132200.v1.1
prunus_persica	Prupe.2G176400_v2.0.a1
pyrus_communis	pycom01g09940
rosa_chinensis	RchiOBHm_Chr1g0357481 RchiOBHm_Chr1g0357581 RchiOBHm_Chr1g0358021
rosa_laevigata	RLG00000028019
rosa_multiflora	Rmu_sc0005812.1_g000011 Rmu_sc0010521.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298730 Rroxscaffold_4G00298740
rosa_rugosa	Rorug01G0256700 Rorug01G0256800
rosa_samantha	Rh1AG271000 Rh1BG237800 Rh1CG254700 Rh1DG265800
rosa_wichuraiana	Rw1G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	3 cut(s)	12, 56, 247
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	362, 363
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	107, 195
AseI	ATTAAT	2 cut(s)	117, 360
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	94, 182
BccI	CCATC	2 cut(s)	22, 55
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	190
BfaI	CTAG	2 cut(s)	272, 463
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	2 cut(s)	108, 196
BlsI	GCNGC	2 cut(s)	109, 197
Bme1390I	CCNGG	2 cut(s)	190, 244
BmeT110I	CYCGRG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	190, 244
BmsI	GCATC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	242, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 363
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	242, 257
BseGI	GGATG	2 cut(s)	33, 66
BseLI	CCNNNNNNNGG	2 cut(s)	362, 363
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	7 cut(s)	302, 305, 308, 311, 314, 317, 320
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	94, 182
BshNI	GGYRCC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	123, 189
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	362, 363
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	434
BspACI	CCGC	3 cut(s)	12, 56, 247
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	242, 257
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	33, 66
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	188, 242
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	94, 182
Bsu36I	CCTNAGG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	33, 66
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	166
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	5 cut(s)	43, 107, 126, 145, 333
CviKI_1	RGCY	5 cut(s)	43, 107, 126, 145, 333
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	1 cut(s)	285
DinI	GGCGCC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	1 cut(s)	266
FaiI	YATR	8 cut(s)	92, 102, 104, 173, 183, 234, 264, 324
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	108, 196
FokI	GGATG	2 cut(s)	40, 73
Fsp4HI	GCNGC	2 cut(s)	108, 196
FspBI	CTAG	2 cut(s)	272, 463
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	108, 196
HaeII	RGCGCY	1 cut(s)	167
HapII	CCGG	2 cut(s)	123, 189
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	123, 189
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188III	TCNNGA	3 cut(s)	272, 284, 313
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	26, 310
HpyF3I	CTNAG	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	164
KasI	GGCGCC	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	8 cut(s)	136, 155, 186, 202, 222, 229, 256, 297
Lsp1109I	GCAGC	2 cut(s)	94, 182
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	272, 463
MboII	GAAGA	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	1 cut(s)	118
Mly113I	GGCGCC	1 cut(s)	164
MmeI	TCCRAC	3 cut(s)	65, 348, 399
MseI	TTAA	3 cut(s)	45, 117, 360
MspI	CCGG	2 cut(s)	123, 189
MspR9I	CCNGG	2 cut(s)	190, 244
Mva1269I	GAATGC	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	244
NarI	GGCGCC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	190
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	109, 197
PluTI	GGCGCC	1 cut(s)	167
PshBI	ATTAAT	2 cut(s)	117, 360
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	165
PspXI	VCTCGAGB	1 cut(s)	152
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	45, 117, 360
SatI	GCNGC	2 cut(s)	108, 196
ScrFI	CCNGG	2 cut(s)	190, 244
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	4 cut(s)	159, 180, 312, 335
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	3 cut(s)	12, 56, 247
SspDI	GGCGCC	1 cut(s)	163
SspMI	CTAG	2 cut(s)	272, 463
StyD4I	CCNGG	2 cut(s)	188, 242
StyI	CCWWGG	1 cut(s)	257
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	45, 117, 360
Tru9I	TTAA	3 cut(s)	45, 117, 360
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	2 cut(s)	107, 195
TspRI	CASTG	1 cut(s)	216
VspI	ATTAAT	2 cut(s)	117, 360
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	2 cut(s)	272, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.