Rw1G024420

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009790
Physical Location & Seq
Reverse (-)
50613960 .. 50614528
569 bp
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UTR
Exon/CDS
Intron
Rw1G024420.1

Sequence Viewer

Length: 267 bp
ATGGCTACTAGGAGATTGGCCTTCAAGATCAGTGTGCTGTATTTTGATGTAGAGGTGAACGGAAAAGTGAGTAGGTCTTATGGCTTTCCTTCTGCTGCCCGAAAGATGGATACTCTAAATGACTTACTTGCTGGAAGTGACCTCATTTCACTTCATTGTGCTCTGACAAATGAAACAATTCAGATTCTGAATGCTGAATATTTACAGCACGTAAAGGCTGGAGCATTTTTTGTAAACACGGGTAGCTGTTGGATGATTGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

88

Amino Acids

9.76

Weight (kDa)

7.81

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 2 - 81 1.1e-13 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 25
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw21I GWGCWC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 100
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 106
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 27
BspANI GGCC 1 cut(s) 20
BssMI GATC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 211
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 82
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 187
CviJI RGCY 5 cut(s) 5, 20, 84, 218, 246
CviKI_1 RGCY 5 cut(s) 5, 20, 84, 218, 246
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
FaiI YATR 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 20
HinfI GANTC 1 cut(s) 184
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 58, 235
Hpy188I TCNGA 3 cut(s) 165, 183, 189
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 58, 235
HpyAV CCTTC 2 cut(s) 31, 99
HpyCH4IV ACGT 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 210
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 2 cut(s) 117, 204
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 2 cut(s) 46, 152
MroXI GAANNNNTTC 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 196
NdeII GATC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 137
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 187
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 27
SduI GDGCHC 1 cut(s) 163
SetI ASST 5 cut(s) 57, 77, 144, 213, 248
SgeI CNNG 9 cut(s) 21, 37, 111, 140, 144, 221, 231, 250, 252
Sse9I AATT 1 cut(s) 177
SspI AATATT 1 cut(s) 200
SspMI CTAG 1 cut(s) 9
TaiI ACGT 1 cut(s) 213
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 184
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 143, 186
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.