Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009790

Physical Location & Seq

Genomic Coordinates Reverse (-)

22175502 .. 22179388

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G176400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGCAGCATGACAAGGACTCGTCTGCGGTGGCCATATCCAAAACCCCCAATTCGATCCAGAATTCGATTCAGGTTCTAAACGGGCCGTCCTTGGCCCACTCCGCCTGGTTCGAAATCCGATTGTTCTACGTCCGGGTCGCGCCGTGCGTGATCGATAGTGTGCCCGATCACCTCACTCTCCGGCACCTCCGCCGAGAAATTGGCGTATCGCTTGAAATCAACGGGGCCAAAGTTCCGGCTTCGGACTCGGCCTCGCTCACGCTCCGGCGCGATCGGGTTGACAAGGAATCGTCGGAGGTCACGTATGTGAGCACCGACAGCGTTCGGGTCACCGGCCCTGTCGAATTCGAGGTGTATGAGAACAATGACATGGTTCTGTGTGGGTCTCTGGAGCGAATGGAGGGTGTTTGGCTCAATGGAAATGCCGGGGGATTGAAGAATGATTCGAAAACGGGTTGGAGTATGGATTGTTATATGGCTGCGTCGATCAATTCGGGTTCTTCCGCGTTTTTTCGGCCAAAACTCGGACTATCGTCGCCGTCCATCGAGGTTTATATCGCCGGATGTTGCTCCGGCGTGCCGGTCATCTTGACAAAGACGATACAGATTAGCCCGAGGCGGAAGGGCACCCGTCACGCCATGCTGGATGCGATTCCAGAGGATGAGGAGGTTGGGAAGGAGCACGGCAAGAGCTGTAATGGGTTGGTTCGCCATCGGAAAGTTCAGATCACAGAACCTGAAATCGATGAGTATGAGTCAGAAGGGAAAATTGGACATCATTTCTACTCTGATGACATGTACACTGGTGAAGATGGCCAACTCACATGGTTTAATGCTGGTGTTAGAGTTGGTGTTGGAATTGGCCTCGGGATGTGCCTTGGGATAGGGATTGGTGTTGGACTGCTCATGCGTTCCTATCAAGCGACTACCAGTAATTTCAGGAGGAGGTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.0

Weight (kDa)

6.01

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01500
fragaria_vesca	FvH4_7g15170
malus_domestica	MD01G1070200.v1.1 MD07G1132200.v1.1
prunus_persica	Prupe.2G176400_v2.0.a1
pyrus_communis	pycom01g09940
rosa_chinensis	RchiOBHm_Chr1g0357481 RchiOBHm_Chr1g0357581 RchiOBHm_Chr1g0358021
rosa_laevigata	RLG00000028019
rosa_multiflora	Rmu_sc0005812.1_g000011 Rmu_sc0010521.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298730 Rroxscaffold_4G00298740
rosa_rugosa	Rorug01G0256700 Rorug01G0256800
rosa_samantha	Rh1AG271000 Rh1BG237800 Rh1CG254700 Rh1DG265800
rosa_wichuraiana	Rw1G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	186, 629
AccII	CGCG	3 cut(s)	143, 273, 509
AciI	CCGC	5 cut(s)	29, 105, 193, 507, 622
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	3 cut(s)	33, 518, 817
AcsI	RAATTY	2 cut(s)	64, 347
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	2 cut(s)	218, 439
AjnI	CCWGG	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	696
AluI	AGCT	1 cut(s)	696
Alw21I	GWGCWC	2 cut(s)	317, 687
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	2 cut(s)	616, 869
AoxI	GGCC	9 cut(s)	33, 86, 96, 228, 252, 337, 518, 817, 865
ApeKI	GCWGC	2 cut(s)	7, 482
ApoI	RAATTY	2 cut(s)	64, 347
AspLEI	GCGC	2 cut(s)	145, 273
AspS9I	GGNCC	4 cut(s)	86, 97, 228, 338
AsuC2I	CCSGG	2 cut(s)	137, 430
AsuHPI	GGTGA	3 cut(s)	164, 325, 821
AsuII	TTCGAA	2 cut(s)	114, 449
AvaI	CYCGRG	2 cut(s)	616, 869
BaeGI	GKGCMC	2 cut(s)	168, 632
BalI	TGGCCA	2 cut(s)	35, 819
BanI	GGYRCC	2 cut(s)	186, 629
Bbv12I	GWGCWC	2 cut(s)	317, 687
BbvI	GCAGC	2 cut(s)	19, 469
BccI	CCATC	3 cut(s)	554, 723, 809
BceAI	ACGGC	4 cut(s)	73, 130, 526, 703
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	137, 430
BcoDI	GTCTC	1 cut(s)	393
BisI	GCNGC	2 cut(s)	8, 483
BlsI	GCNGC	2 cut(s)	9, 484
Bme1390I	CCNGG	3 cut(s)	109, 137, 430
BmeT110I	CYCGRG	2 cut(s)	616, 869
BmgT120I	GGNCC	4 cut(s)	86, 97, 228, 338
BmiI	GGNNCC	3 cut(s)	188, 229, 631
BmrFI	CCNGG	3 cut(s)	109, 137, 430
BmsI	GCATC	1 cut(s)	640
BoxI	GACNNNNGTC	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	413
Bpu14I	TTCGAA	2 cut(s)	114, 449
BpuMI	CCSGG	2 cut(s)	137, 430
Bsa29I	ATCGAT	2 cut(s)	156, 747
BsaAI	YACGTR	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	93, 429, 617, 868, 880
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse118I	RCCGGY	2 cut(s)	335, 583
Bse1I	ACTGG	2 cut(s)	811, 933
BseBI	CCWGG	1 cut(s)	109
BseCI	ATCGAT	2 cut(s)	156, 747
BseDI	CCNNGG	5 cut(s)	93, 429, 617, 868, 880
BseGI	GGATG	4 cut(s)	572, 655, 670, 879
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseNI	ACTGG	2 cut(s)	811, 933
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	2 cut(s)	168, 632
BseXI	GCAGC	2 cut(s)	19, 469
Bsh1236I	CGCG	3 cut(s)	143, 273, 509
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	9 cut(s)	35, 88, 98, 230, 254, 339, 520, 819, 867
BshNI	GGYRCC	2 cut(s)	186, 629
BshVI	ATCGAT	2 cut(s)	156, 747
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	317, 687
BsiHKCI	CYCGRG	2 cut(s)	616, 869
BsiSI	CCGG	9 cut(s)	136, 184, 239, 268, 336, 429, 564, 576, 584
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	393
BsnI	GGCC	9 cut(s)	35, 88, 98, 230, 254, 339, 520, 819, 867
Bso31I	GGTCTC	1 cut(s)	393
BsoBI	CYCGRG	2 cut(s)	616, 869
Bsp119I	TTCGAA	2 cut(s)	114, 449
Bsp1286I	GDGCHC	4 cut(s)	168, 317, 632, 687
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
BspACI	CCGC	5 cut(s)	29, 105, 193, 507, 622
BspANI	GGCC	9 cut(s)	35, 88, 98, 230, 254, 339, 520, 819, 867
BspDI	ATCGAT	2 cut(s)	156, 747
BspFNI	CGCG	3 cut(s)	143, 273, 509
BspLI	GGNNCC	3 cut(s)	188, 229, 631
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	2 cut(s)	114, 449
BspT107I	GGYRCC	2 cut(s)	186, 629
BspTNI	GGTCTC	1 cut(s)	393
BsrFI	RCCGGY	2 cut(s)	335, 583
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	2 cut(s)	811, 933
BssAI	RCCGGY	2 cut(s)	335, 583
BssECI	CCNNGG	5 cut(s)	93, 429, 617, 868, 880
BssMI	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
BssT1I	CCWWGG	2 cut(s)	93, 880
Bst2UI	CCWGG	1 cut(s)	109
BstAUI	TGTACA	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	306
BstBI	TTCGAA	2 cut(s)	114, 449
BstC8I	GCNNGC	1 cut(s)	581
BstEII	GGTNACC	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	572, 655, 670, 879
BstFNI	CGCG	3 cut(s)	143, 273, 509
BstHHI	GCGC	2 cut(s)	145, 273
BstKTI	GATC	6 cut(s)	60, 156, 172, 277, 492, 732
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 321
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	802
BstPAI	GACNNNNGTC	1 cut(s)	535
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	107, 135, 428
BstSLI	GKGCMC	2 cut(s)	168, 632
BstUI	CGCG	3 cut(s)	143, 273, 509
BstV1I	GCAGC	2 cut(s)	19, 469
Bsu15I	ATCGAT	2 cut(s)	156, 747
BsuRI	GGCC	9 cut(s)	35, 88, 98, 230, 254, 339, 520, 819, 867
BsuTUI	ATCGAT	2 cut(s)	156, 747
BtsCI	GGATG	4 cut(s)	572, 655, 670, 879
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	581
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	2 cut(s)	145, 273
Cfr10I	RCCGGY	2 cut(s)	335, 583
Cfr13I	GGNCC	4 cut(s)	86, 97, 228, 338
ClaI	ATCGAT	2 cut(s)	156, 747
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	802
CviAII	CATG	6 cut(s)	11, 373, 643, 799, 828, 910
CviQI	GTAC	1 cut(s)	802
DpnI	GATC	6 cut(s)	59, 155, 171, 276, 491, 731
DpnII	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
EaeI	YGGCCR	3 cut(s)	33, 518, 817
EciI	GGCGGA	3 cut(s)	94, 182, 637
Eco130I	CCWWGG	2 cut(s)	93, 880
Eco31I	GGTCTC	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	616, 869
Eco91I	GGTNACC	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	331
EcoRI	GAATTC	2 cut(s)	64, 347
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	93, 880
ErhI	CCWWGG	2 cut(s)	93, 880
FaeI	CATG	6 cut(s)	14, 376, 646, 802, 831, 913
FatI	CATG	6 cut(s)	10, 372, 642, 798, 827, 909
Fnu4HI	GCNGC	2 cut(s)	8, 483
FokI	GGATG	4 cut(s)	579, 662, 677, 886
Fsp4HI	GCNGC	2 cut(s)	8, 483
GlaI	GCGC	2 cut(s)	144, 272
GluI	GCNGC	2 cut(s)	8, 483
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	9 cut(s)	35, 88, 98, 230, 254, 339, 520, 819, 867
HapII	CCGG	9 cut(s)	136, 184, 239, 268, 336, 429, 564, 576, 584
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	2 cut(s)	145, 273
Hin1II	CATG	6 cut(s)	14, 376, 646, 802, 831, 913
Hin6I	GCGC	2 cut(s)	143, 271
HinP1I	GCGC	2 cut(s)	143, 271
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	7 cut(s)	20, 70, 248, 290, 446, 655, 758
HpaII	CCGG	9 cut(s)	136, 184, 239, 268, 336, 429, 564, 576, 584
HphI	GGTGA	3 cut(s)	164, 325, 821
Hpy166II	GTNNAC	2 cut(s)	283, 804
Hpy188I	TCNGA	9 cut(s)	122, 247, 298, 530, 720, 729, 763, 793, 959
Hpy188III	TCNNGA	6 cut(s)	61, 392, 592, 659, 871, 943
Hpy8I	GTNNAC	2 cut(s)	283, 804
Hpy99I	CGWCG	3 cut(s)	298, 490, 541
HpyAV	CCTTC	3 cut(s)	619, 673, 758
HpyCH4IV	ACGT	2 cut(s)	132, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 321
HpySE526I	ACGT	2 cut(s)	132, 305
Hsp92II	CATG	6 cut(s)	14, 376, 646, 802, 831, 913
HspAI	GCGC	2 cut(s)	143, 271
Kzo9I	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
LmnI	GCTCC	5 cut(s)	4, 270, 394, 578, 682
Lsp1109I	GCAGC	2 cut(s)	19, 469
LweI	GCATC	1 cut(s)	640
MaeII	ACGT	2 cut(s)	132, 305
MaeIII	GTNAC	3 cut(s)	301, 331, 635
MalI	GATC	6 cut(s)	59, 155, 171, 276, 491, 731
MboI	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
MboII	GAAGA	3 cut(s)	451, 495, 824
MhlI	GDGCHC	4 cut(s)	168, 317, 632, 687
MlsI	TGGCCA	2 cut(s)	35, 819
MluCI	AATT	8 cut(s)	52, 64, 201, 347, 493, 771, 861, 937
MluNI	TGGCCA	2 cut(s)	35, 819
MlyI	GAGTC	3 cut(s)	14, 242, 767
MmeI	TCCRAC	4 cut(s)	276, 440, 838, 880
Mox20I	TGGCCA	2 cut(s)	35, 819
MscI	TGGCCA	2 cut(s)	35, 819
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	2 cut(s)	35, 819
MspI	CCGG	9 cut(s)	136, 184, 239, 268, 336, 429, 564, 576, 584
MspR9I	CCNGG	3 cut(s)	109, 137, 430
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	3 cut(s)	143, 273, 509
MwoI	GCNNNNNNNGC	2 cut(s)	104, 321
NciI	CCSGG	2 cut(s)	137, 430
NdeII	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
NlaIII	CATG	6 cut(s)	14, 376, 646, 802, 831, 913
NlaIV	GGNNCC	3 cut(s)	188, 229, 631
NmeAIII	GCCGAG	2 cut(s)	221, 230
NmuCI	GTSAC	3 cut(s)	301, 331, 635
NspI	RCATGY	1 cut(s)	802
NspV	TTCGAA	2 cut(s)	114, 449
OliI	CACNNNNGTG	1 cut(s)	308
PciI	ACATGT	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 302
PfeI	GAWTC	4 cut(s)	70, 290, 446, 655
PkrI	GCNGC	2 cut(s)	9, 484
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	3 cut(s)	14, 242, 766
PpsI	GAGTC	3 cut(s)	14, 242, 766
Ppu21I	YACGTR	1 cut(s)	306
PscI	ACATGT	1 cut(s)	798
PshAI	GACNNNNGTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	188, 229, 631
PspPI	GGNCC	4 cut(s)	86, 97, 228, 338
PstNI	CAGNNNCTG	1 cut(s)	740
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	2 cut(s)	8, 483
Sau3AI	GATC	6 cut(s)	57, 153, 169, 274, 489, 729
Sau96I	GGNCC	4 cut(s)	86, 97, 228, 338
SchI	GAGTC	3 cut(s)	14, 242, 767
ScrFI	CCNGG	3 cut(s)	109, 137, 430
SduI	GDGCHC	4 cut(s)	168, 317, 632, 687
SfaNI	GCATC	1 cut(s)	640
SfuI	TTCGAA	2 cut(s)	114, 449
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	8 cut(s)	52, 64, 201, 347, 493, 771, 861, 937
SsiI	CCGC	5 cut(s)	29, 105, 193, 507, 622
StyD4I	CCNGG	3 cut(s)	107, 135, 428
StyI	CCWWGG	2 cut(s)	93, 880
TaiI	ACGT	2 cut(s)	135, 308
TasI	AATT	8 cut(s)	52, 64, 201, 347, 493, 771, 861, 937
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	4 cut(s)	70, 290, 446, 655
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	3 cut(s)	301, 331, 635
TseI	GCWGC	2 cut(s)	7, 482
Tsp45I	GTSAC	3 cut(s)	301, 331, 635
TspRI	CASTG	1 cut(s)	811
XapI	RAATTY	2 cut(s)	64, 347
XceI	RCATGY	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.