FvH4_7g15170

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
13210797 .. 13213667
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15170.t1

Sequence Viewer

Length: 948 bp
ATGGAGCCGCAGATTGAGAAGGAGCCGCCGCCGTCCGTGGCGGCGAAGACGAAGGCCGCGAGCTCGTACCAGATGCTGAATGGGCCGTCCCTCACGCACTCGGCCTGGTTCGAAATCCGTCTCTTCTACGTCCGGATCGCGCCGTGCGTCATCGACAGCGTGCCGGACCACCTCACGCTCTGCTCCCTCCGCCGCGAGATTGGCGTCTCTCTCGAGATCAACGGCGCCAGGATTCCGAACTCGGAGACGGCGTCGCTGACGCTACGACGCGACAGGTTGGATAAGGAGTCGTCGGAGGTGACGTACGTGGCCACCGACAGCGTGAGGGTCACCGGCGGGGTGGAGTTTGAGGTGTATGAGAATAATGACATGGTGCTGTGCGGGTCGTTGGAGAGAATGGAGGGCGTTTGGCTTAACGGGAATGTAGGGATGGAGAATGATTCGAAGACGGGTTGGAGTATGGATTGTTATATGGCGGCGTCGATTAGTTCCGGCTCTTCGGCGTTTTTCCGGCCGAAGCTTGGGGTTTCGGCGCCGTCTATAGAGGTTTATATCGCCGGGTGCTGCTCCGGTGTGCCGGTGATTTTGACAAAGACGATACAGGTTAGTCCCAGGCGGAAGTGCCCGAGGCATGCCACGCTGGATGCTATTCCCGAGGAGGAGGAGGTTGGGAAGGAGAATAGTAAGAATGGGCTAATTCGGCAGCGAAAAGTGCAGATGACAGAATCTGAAATCGATGAGTATGAATCAGATGGGAAGATAGGACATGGTTTCTACTCTGATGAAATGTACATGGGTGAAGATGGTCAACTCACCTGGTTTAATGCTGGTGTTAGAGTTGGTGTTGGAATTGGCCTTGGGATGTGCCTTGGAATAGGGATTGGTGTTGGACTGCTCATGCGTTCCTATCAAGCGACTACTAGTAATTTCAGGAGGAGGTTTCTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

34.63

Weight (kDa)

5.34

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 532
AccII CGCG 4 cut(s) 59, 140, 195, 270
AccIII TCCGGA 1 cut(s) 132
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 2 cut(s) 309, 512
AcyI GRCGYC 5 cut(s) 204, 225, 251, 479, 533
AfaI GTAC 3 cut(s) 68, 305, 791
AfiI CCNNNNNNNGG 1 cut(s) 521
AhlI ACTAGT 1 cut(s) 920
AjnI CCWGG 4 cut(s) 104, 227, 611, 815
AluBI AGCT 2 cut(s) 63, 520
AluI AGCT 2 cut(s) 63, 520
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 125, 211, 239
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 2 cut(s) 76, 728
Ama87I CYCGRG 3 cut(s) 212, 625, 653
Aor13HI TCCGGA 1 cut(s) 132
AoxI GGCC 6 cut(s) 54, 83, 102, 309, 512, 853
ApeKI GCWGC 2 cut(s) 564, 703
AspLEI GCGC 3 cut(s) 142, 227, 535
AspS9I GGNCC 2 cut(s) 83, 166
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 5 cut(s) 310, 322, 592, 805, 809
AsuII TTCGAA 2 cut(s) 111, 443
AvaI CYCGRG 3 cut(s) 212, 625, 653
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 626
BalI TGGCCA 1 cut(s) 311
BanI GGYRCC 2 cut(s) 224, 532
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 53, 452
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 551, 715
BccI CCATC 3 cut(s) 424, 746, 797
BceAI ACGGC 6 cut(s) 16, 70, 127, 238, 264, 520
BciT130I CCWGG 4 cut(s) 106, 229, 613, 817
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 3 cut(s) 125, 211, 239
BcuI ACTAGT 1 cut(s) 920
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 1 cut(s) 540
BfoI RGCGCY 2 cut(s) 228, 536
BisI GCNGC 9 cut(s) 8, 26, 29, 42, 57, 193, 477, 565, 704
BlsI GCNGC 9 cut(s) 9, 27, 30, 43, 58, 194, 478, 566, 705
Bme1390I CCNGG 5 cut(s) 106, 229, 559, 613, 817
Bme18I GGWCC 1 cut(s) 166
BmeT110I CYCGRG 3 cut(s) 212, 625, 653
BmgT120I GGNCC 2 cut(s) 83, 166
BmiI GGNNCC 4 cut(s) 6, 24, 226, 534
BmrFI CCNGG 5 cut(s) 106, 229, 559, 613, 817
BmsI GCATC 2 cut(s) 63, 634
BpiI GAAGAC 2 cut(s) 53, 452
Bpu14I TTCGAA 2 cut(s) 111, 443
BpuMI CCSGG 1 cut(s) 559
Bsa29I ATCGAT 1 cut(s) 735
BsaAI YACGTR 1 cut(s) 307
BsaHI GRCGYC 5 cut(s) 204, 225, 251, 479, 533
BsaJI CCNNGG 6 cut(s) 36, 611, 626, 654, 856, 868
BsaWI WCCGGW 2 cut(s) 132, 569
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 2 cut(s) 332, 577
BseAI TCCGGA 1 cut(s) 132
BseBI CCWGG 4 cut(s) 106, 229, 613, 817
BseCI ATCGAT 1 cut(s) 735
BseDI CCNNGG 6 cut(s) 36, 611, 626, 654, 856, 868
BseGI GGATG 3 cut(s) 435, 649, 867
BseLI CCNNNNNNNGG 1 cut(s) 521
BseRI GAGGAG 3 cut(s) 671, 674, 677
BseSI GKGCMC 1 cut(s) 626
BseX3I CGGCCG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 551, 715
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 4 cut(s) 59, 140, 195, 270
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 6 cut(s) 56, 85, 104, 311, 514, 855
BshNI GGYRCC 2 cut(s) 224, 532
BshVI ATCGAT 1 cut(s) 735
BsiEI CGRYCG 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 3 cut(s) 212, 625, 653
BsiSI CCGG 8 cut(s) 133, 164, 333, 492, 511, 558, 570, 578
BsiWI CGTACG 1 cut(s) 303
BslFI GGGAC 2 cut(s) 73, 594
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 3 cut(s) 125, 211, 239
BsmBI CGTCTC 3 cut(s) 125, 211, 239
BsmFI GGGAC 2 cut(s) 73, 594
BsnI GGCC 6 cut(s) 56, 85, 104, 311, 514, 855
BsoBI CYCGRG 3 cut(s) 212, 625, 653
Bsp119I TTCGAA 2 cut(s) 111, 443
Bsp1286I GDGCHC 2 cut(s) 65, 626
Bsp13I TCCGGA 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 2 cut(s) 135, 216
BspANI GGCC 6 cut(s) 56, 85, 104, 311, 514, 855
BspDI ATCGAT 1 cut(s) 735
BspEI TCCGGA 1 cut(s) 132
BspFNI CGCG 4 cut(s) 59, 140, 195, 270
BspLI GGNNCC 4 cut(s) 6, 24, 226, 534
BspPI GGATC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 502
BspT104I TTCGAA 2 cut(s) 111, 443
BspT107I GGYRCC 2 cut(s) 224, 532
BsrFI RCCGGY 2 cut(s) 332, 577
BsrGI TGTACA 1 cut(s) 789
BssAI RCCGGY 2 cut(s) 332, 577
BssECI CCNNGG 6 cut(s) 36, 611, 626, 654, 856, 868
BssMI GATC 2 cut(s) 135, 216
BssNI GRCGYC 5 cut(s) 204, 225, 251, 479, 533
BssT1I CCWWGG 2 cut(s) 856, 868
Bst2UI CCWGG 4 cut(s) 106, 229, 613, 817
Bst6I CTCTTC 2 cut(s) 128, 502
BstACI GRCGYC 5 cut(s) 204, 225, 251, 479, 533
BstAUI TGTACA 1 cut(s) 789
BstBAI YACGTR 1 cut(s) 307
BstBI TTCGAA 2 cut(s) 111, 443
BstC8I GCNNGC 3 cut(s) 61, 161, 633
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 328
BstF5I GGATG 3 cut(s) 435, 649, 867
BstFNI CGCG 4 cut(s) 59, 140, 195, 270
BstH2I RGCGCY 2 cut(s) 228, 536
BstHHI GCGC 3 cut(s) 142, 227, 535
BstKTI GATC 2 cut(s) 138, 219
BstMAI GTCTC 3 cut(s) 125, 211, 239
BstMBI GATC 2 cut(s) 135, 216
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 6 cut(s) 82, 189, 201, 637, 700, 712
BstNI CCWGG 4 cut(s) 106, 229, 613, 817
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 5 cut(s) 104, 227, 557, 611, 815
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 4 cut(s) 59, 140, 195, 270
BstV1I GCAGC 2 cut(s) 551, 715
BstV2I GAAGAC 2 cut(s) 53, 452
BstZI CGGCCG 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 735
BsuRI GGCC 6 cut(s) 56, 85, 104, 311, 514, 855
BsuTUI ATCGAT 1 cut(s) 735
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 3 cut(s) 435, 649, 867
Cac8I GCNNGC 3 cut(s) 61, 161, 633
CaiI CAGNNNCTG 2 cut(s) 76, 728
CfoI GCGC 3 cut(s) 142, 227, 535
Cfr10I RCCGGY 2 cut(s) 332, 577
Cfr13I GGNCC 2 cut(s) 83, 166
ClaI ATCGAT 1 cut(s) 735
CseI GACGC 6 cut(s) 136, 193, 240, 268, 276, 468
CsiI ACCWGGT 1 cut(s) 815
Csp6I GTAC 3 cut(s) 67, 304, 790
CviAII CATG 5 cut(s) 370, 632, 767, 793, 898
CviQI GTAC 3 cut(s) 67, 304, 790
DinI GGCGCC 2 cut(s) 226, 534
DpnI GATC 2 cut(s) 137, 218
DpnII GATC 2 cut(s) 135, 216
EaeI YGGCCR 2 cut(s) 309, 512
EagI CGGCCG 1 cut(s) 512
Eam1104I CTCTTC 2 cut(s) 128, 502
EarI CTCTTC 2 cut(s) 128, 502
EciI GGCGGA 2 cut(s) 179, 631
Ecl136II GAGCTC 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 512
Eco130I CCWWGG 2 cut(s) 856, 868
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 166
Eco52I CGGCCG 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 3 cut(s) 212, 625, 653
Eco91I GGTNACC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 328
EcoRII CCWGG 4 cut(s) 104, 227, 611, 815
EcoT14I CCWWGG 2 cut(s) 856, 868
EcoT38I GRGCYC 1 cut(s) 65
EgeI GGCGCC 2 cut(s) 226, 534
EheI GGCGCC 2 cut(s) 226, 534
ErhI CCWWGG 2 cut(s) 856, 868
Esp3I CGTCTC 3 cut(s) 125, 211, 239
FaeI CATG 5 cut(s) 373, 635, 770, 796, 901
FaqI GGGAC 2 cut(s) 73, 594
FatI CATG 5 cut(s) 369, 631, 766, 792, 897
FauI CCCGC 2 cut(s) 329, 374
Fnu4HI GCNGC 9 cut(s) 8, 26, 29, 42, 57, 193, 477, 565, 704
FokI GGATG 3 cut(s) 442, 656, 874
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 9 cut(s) 8, 26, 29, 42, 57, 193, 477, 565, 704
FspBI CTAG 1 cut(s) 921
GlaI GCGC 3 cut(s) 141, 226, 534
GluI GCNGC 9 cut(s) 8, 26, 29, 42, 57, 193, 477, 565, 704
HaeII RGCGCY 2 cut(s) 228, 536
HaeIII GGCC 6 cut(s) 56, 85, 104, 311, 514, 855
HapII CCGG 8 cut(s) 133, 164, 333, 492, 511, 558, 570, 578
HgaI GACGC 6 cut(s) 136, 193, 240, 268, 276, 468
HhaI GCGC 3 cut(s) 142, 227, 535
Hin1I GRCGYC 5 cut(s) 204, 225, 251, 479, 533
Hin1II CATG 5 cut(s) 373, 635, 770, 796, 901
Hin6I GCGC 3 cut(s) 140, 225, 533
HinP1I GCGC 3 cut(s) 140, 225, 533
HincII GTYRAC 1 cut(s) 809
HindII GTYRAC 1 cut(s) 809
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 5 cut(s) 232, 287, 440, 725, 746
HpaII CCGG 8 cut(s) 133, 164, 333, 492, 511, 558, 570, 578
HphI GGTGA 5 cut(s) 310, 322, 592, 805, 809
Hpy166II GTNNAC 1 cut(s) 809
Hpy188I TCNGA 6 cut(s) 237, 244, 295, 730, 751, 781
Hpy188III TCNNGA 5 cut(s) 133, 212, 214, 653, 931
Hpy8I GTNNAC 1 cut(s) 809
Hpy99I CGWCG 4 cut(s) 256, 270, 295, 484
HpyAV CCTTC 3 cut(s) 13, 46, 667
HpyCH4IV ACGT 3 cut(s) 129, 302, 306
HpyCH4V TGCA 1 cut(s) 715
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 189, 201, 637, 700, 712
HpySE526I ACGT 3 cut(s) 129, 302, 306
Hsp92I GRCGYC 5 cut(s) 204, 225, 251, 479, 533
Hsp92II CATG 5 cut(s) 373, 635, 770, 796, 901
HspAI GCGC 3 cut(s) 140, 225, 533
KasI GGCGCC 2 cut(s) 224, 532
Kpn2I TCCGGA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 135, 216
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 4 cut(s) 4, 22, 188, 572
Lsp1109I GCAGC 2 cut(s) 551, 715
LweI GCATC 2 cut(s) 63, 634
MabI ACCWGGT 1 cut(s) 815
MaeI CTAG 1 cut(s) 921
MaeII ACGT 3 cut(s) 129, 302, 306
MaeIII GTNAC 2 cut(s) 298, 328
MalI GATC 2 cut(s) 137, 218
MboI GATC 2 cut(s) 135, 216
MboII GAAGA 6 cut(s) 58, 115, 457, 489, 769, 812
MhlI GDGCHC 2 cut(s) 65, 626
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 3 cut(s) 696, 849, 925
MluNI TGGCCA 1 cut(s) 311
Mly113I GGCGCC 2 cut(s) 225, 533
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 6 cut(s) 258, 273, 369, 434, 826, 868
Mox20I TGGCCA 1 cut(s) 311
MroI TCCGGA 1 cut(s) 132
MscI TGGCCA 1 cut(s) 311
MseI TTAA 2 cut(s) 414, 822
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 8 cut(s) 133, 164, 333, 492, 511, 558, 570, 578
MspR9I CCNGG 5 cut(s) 106, 229, 559, 613, 817
MvaI CCWGG 4 cut(s) 106, 229, 613, 817
MvnI CGCG 4 cut(s) 59, 140, 195, 270
MwoI GCNNNNNNNGC 6 cut(s) 82, 189, 201, 637, 700, 712
NarI GGCGCC 2 cut(s) 225, 533
NciI CCSGG 1 cut(s) 559
NdeII GATC 2 cut(s) 135, 216
NlaIII CATG 5 cut(s) 373, 635, 770, 796, 901
NlaIV GGNNCC 4 cut(s) 6, 24, 226, 534
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 298, 328
NspI RCATGY 1 cut(s) 635
NspV TTCGAA 2 cut(s) 111, 443
PaeI GCATGC 1 cut(s) 635
PaeR7I CTCGAG 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 5 cut(s) 56, 144, 248, 299, 312
PfeI GAWTC 4 cut(s) 232, 440, 725, 746
Pfl23II CGTACG 1 cut(s) 303
PflFI GACNNNGTC 1 cut(s) 250
PkrI GCNGC 9 cut(s) 9, 27, 30, 43, 58, 194, 478, 566, 705
PleI GAGTC 1 cut(s) 295
PluTI GGCGCC 2 cut(s) 228, 536
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 65
Psp6I CCWGG 4 cut(s) 104, 227, 611, 815
PspEI GGTNACC 1 cut(s) 328
PspGI CCWGG 4 cut(s) 104, 227, 611, 815
PspLI CGTACG 1 cut(s) 303
PspN4I GGNNCC 4 cut(s) 6, 24, 226, 534
PspPI GGNCC 2 cut(s) 83, 166
PstNI CAGNNNCTG 2 cut(s) 76, 728
PsyI GACNNNGTC 1 cut(s) 250
RsaI GTAC 3 cut(s) 68, 305, 791
RsaNI GTAC 3 cut(s) 67, 304, 790
SacI GAGCTC 1 cut(s) 65
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 414, 822
SatI GCNGC 9 cut(s) 8, 26, 29, 42, 57, 193, 477, 565, 704
Sau3AI GATC 2 cut(s) 135, 216
Sau96I GGNCC 2 cut(s) 83, 166
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 5 cut(s) 106, 229, 559, 613, 817
SduI GDGCHC 2 cut(s) 65, 626
SexAI ACCWGGT 1 cut(s) 815
SfaNI GCATC 2 cut(s) 63, 634
SfcI CTRYAG 1 cut(s) 540
SfoI GGCGCC 2 cut(s) 226, 534
Sfr274I CTCGAG 1 cut(s) 212
SfuI TTCGAA 2 cut(s) 111, 443
SgrAI CRCCGGYG 1 cut(s) 332
SinI GGWCC 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 920
SphI GCATGC 1 cut(s) 635
Sse9I AATT 3 cut(s) 696, 849, 925
SspDI GGCGCC 2 cut(s) 224, 532
SspMI CTAG 1 cut(s) 921
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 5 cut(s) 104, 227, 557, 611, 815
StyI CCWWGG 2 cut(s) 856, 868
TaiI ACGT 3 cut(s) 132, 305, 309
TaqI TCGA 6 cut(s) 111, 153, 213, 443, 482, 735
TasI AATT 3 cut(s) 696, 849, 925
TatI WGTACW 1 cut(s) 789
TauI GCSGC 7 cut(s) 10, 28, 31, 44, 59, 195, 479
TfiI GAWTC 4 cut(s) 232, 440, 725, 746
Tru1I TTAA 2 cut(s) 414, 822
Tru9I TTAA 2 cut(s) 414, 822
TseFI GTSAC 2 cut(s) 298, 328
TseI GCWGC 2 cut(s) 564, 703
Tsp45I GTSAC 2 cut(s) 298, 328
TspDTI ATGAA 2 cut(s) 759, 798
TspGWI ACGGA 2 cut(s) 25, 107
Tth111I GACNNNGTC 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 166
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.