Rroxscaffold_4G00298730

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
18555839 .. 18558145
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298730.1

Sequence Viewer

Length: 906 bp
ATGGAACCGCAGCATGACAAGGAAGCGTCATCCATGGTCGCCAAGACGAAGAGCGCCAATTCGTACCAGATGCTGAACGGGCCGTCGCTGACGCACTCGGCCTGGTTCGAAATCCGGTTGTTCTACGTCCGGATCGCGCCGTGCGTCATCGACAGCGTGCCGGACCACCTCACGCTCTGCCACCTCCGCCGCGACATCGGCGTGTCTCTCGAGATCAACGGCGCCAGGATTCCGAACTCGGACTCGGCGTCGCTCACGCTCCGCCGCGACCGGCTGGACAAGGAGTCGTCGGAGGTGACGTACGTGGCCACCGACAGCGTGAGGGTCACCGGCGGGGTTGAGTTTGAGGTCTACGAGAACAATGACATGGTGCTGTGCGGGTCGTTGGAGAGAATGGAAGGCGTTTGGCTCAATGGGAATGCGGGGATGGAGAATGATTCCAAGACGGGTTGGAGTATGGATTGTTATATGGCTGCGTCTATTAATTCCGGCTCTTCGGCGTTTTTCCGGCCGAAACTTGGGGTTTCGGCGCCGTCTATAGAGGTTTATATCGCCGGCTGCTGCTCTGGTGTGCCGGTGATATTGACAAAGACGATACAGATTAGTCCCAGGCGGAAGTGCCCAAGGCACGCCACGCTGGATGCGATTCCCGAGGAGGAGGAGGTTGGGAAGGAGCATAGTAAGAGCTGTAATGGGTTAATTCGGCAGCGAAAAGTGCAGATGACAGAATCTGAAATTGATGAGTATGAATCAGATGGTAAAATTGGACATGCTCTTACAAAGGATGCCCAAGTTCTTCATTTCACAGTTCTCACACCTAAGGCGGCCGTGTACTGGACCATGAATCTGTTGTATGATATGAAACATAGAGATGGTTGTAATGCGGATTTGCAGCTTCAGTCGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

301

Amino Acids

33.4

Weight (kDa)

5.63

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 529
AccI GTMKAC 1 cut(s) 351
AccII CGCG 3 cut(s) 137, 192, 267
AccIII TCCGGA 1 cut(s) 129
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 3 cut(s) 306, 509, 825
AcuI CTGAAG 1 cut(s) 881
AcyI GRCGYC 3 cut(s) 222, 248, 530
AfaI GTAC 3 cut(s) 65, 302, 833
AfiI CCNNNNNNNGG 2 cut(s) 518, 834
AhdI GACNNNNNGTC 2 cut(s) 247, 283
AjnI CCWGG 3 cut(s) 101, 224, 608
AluBI AGCT 2 cut(s) 687, 895
AluI AGCT 2 cut(s) 687, 895
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 2 cut(s) 73, 731
Ama87I CYCGRG 2 cut(s) 209, 650
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 5 cut(s) 80, 99, 306, 509, 825
ApeKI GCWGC 6 cut(s) 10, 473, 558, 561, 706, 892
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 4 cut(s) 56, 139, 224, 532
AspS9I GGNCC 3 cut(s) 80, 163, 837
AsuHPI GGTGA 3 cut(s) 307, 319, 589
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 2 cut(s) 209, 650
AvaII GGWCC 2 cut(s) 163, 837
AxyI CCTNAGG 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 623
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 2 cut(s) 221, 529
BbvI GCAGC 5 cut(s) 22, 460, 545, 548, 718
BccI CCATC 3 cut(s) 421, 749, 866
BceAI ACGGC 5 cut(s) 67, 124, 235, 517, 812
BciT130I CCWGG 3 cut(s) 103, 226, 610
BcoDI GTCTC 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 3 cut(s) 57, 225, 533
BisI GCNGC 9 cut(s) 11, 190, 265, 474, 559, 562, 707, 825, 893
BlsI GCNGC 9 cut(s) 12, 191, 266, 475, 560, 563, 708, 826, 894
Bme1390I CCNGG 3 cut(s) 103, 226, 610
Bme18I GGWCC 2 cut(s) 163, 837
BmeRI GACNNNNNGTC 2 cut(s) 247, 283
BmeT110I CYCGRG 2 cut(s) 209, 650
BmgT120I GGNCC 3 cut(s) 80, 163, 837
BmiI GGNNCC 3 cut(s) 6, 223, 531
BmrFI CCNGG 3 cut(s) 103, 226, 610
BmsI GCATC 3 cut(s) 60, 631, 775
Bpu14I TTCGAA 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 3 cut(s) 222, 248, 530
BsaJI CCNNGG 4 cut(s) 33, 608, 623, 651
BsaWI WCCGGW 2 cut(s) 114, 129
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 834
Bse118I RCCGGY 4 cut(s) 270, 329, 554, 574
Bse1I ACTGG 1 cut(s) 839
Bse21I CCTNAGG 1 cut(s) 819
BseAI TCCGGA 1 cut(s) 129
BseBI CCWGG 3 cut(s) 103, 226, 610
BseDI CCNNGG 4 cut(s) 33, 608, 623, 651
BseGI GGATG 4 cut(s) 29, 432, 646, 790
BseLI CCNNNNNNNGG 2 cut(s) 518, 834
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 3 cut(s) 668, 671, 674
BseSI GKGCMC 1 cut(s) 623
BseX3I CGGCCG 2 cut(s) 509, 825
BseXI GCAGC 5 cut(s) 22, 460, 545, 548, 718
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 3 cut(s) 137, 192, 267
Bsh1285I CGRYCG 3 cut(s) 271, 512, 828
BshFI GGCC 5 cut(s) 82, 101, 308, 511, 827
BshNI GGYRCC 2 cut(s) 221, 529
BsiEI CGRYCG 3 cut(s) 271, 512, 828
BsiHKCI CYCGRG 2 cut(s) 209, 650
BsiSI CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
BsiWI CGTACG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 518, 834
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 5 cut(s) 82, 101, 308, 511, 827
BsoBI CYCGRG 2 cut(s) 209, 650
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 623
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 2 cut(s) 132, 213
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 5 cut(s) 82, 101, 308, 511, 827
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 3 cut(s) 137, 192, 267
BspLI GGNNCC 3 cut(s) 6, 223, 531
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 2 cut(s) 44, 499
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 2 cut(s) 221, 529
BsrFI RCCGGY 4 cut(s) 270, 329, 554, 574
BsrI ACTGG 1 cut(s) 839
BssAI RCCGGY 4 cut(s) 270, 329, 554, 574
BssECI CCNNGG 4 cut(s) 33, 608, 623, 651
BssMI GATC 2 cut(s) 132, 213
BssNI GRCGYC 3 cut(s) 222, 248, 530
BssT1I CCWWGG 2 cut(s) 33, 623
Bst2UI CCWGG 3 cut(s) 103, 226, 610
Bst4CI ACNGT 1 cut(s) 808
Bst6I CTCTTC 2 cut(s) 44, 499
BstACI GRCGYC 3 cut(s) 222, 248, 530
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 158, 556, 630
BstDEI CTNAG 1 cut(s) 819
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 4 cut(s) 29, 432, 646, 790
BstFNI CGCG 3 cut(s) 137, 192, 267
BstH2I RGCGCY 3 cut(s) 57, 225, 533
BstHHI GCGC 4 cut(s) 56, 139, 224, 532
BstKTI GATC 2 cut(s) 135, 216
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 132, 213
BstMCI CGRYCG 3 cut(s) 271, 512, 828
BstMWI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
BstNI CCWGG 3 cut(s) 103, 226, 610
BstNSI RCATGY 1 cut(s) 773
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 101, 224, 608
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 3 cut(s) 137, 192, 267
BstV1I GCAGC 5 cut(s) 22, 460, 545, 548, 718
BstZI CGGCCG 2 cut(s) 509, 825
Bsu36I CCTNAGG 1 cut(s) 819
BsuRI GGCC 5 cut(s) 82, 101, 308, 511, 827
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 29, 432, 646, 790
Cac8I GCNNGC 3 cut(s) 158, 556, 630
CaiI CAGNNNCTG 2 cut(s) 73, 731
CfoI GCGC 4 cut(s) 56, 139, 224, 532
Cfr10I RCCGGY 4 cut(s) 270, 329, 554, 574
Cfr13I GGNCC 3 cut(s) 80, 163, 837
CseI GACGC 5 cut(s) 15, 100, 133, 237, 465
Csp6I GTAC 3 cut(s) 64, 301, 832
CviAII CATG 5 cut(s) 14, 34, 367, 770, 841
CviQI GTAC 3 cut(s) 64, 301, 832
DdeI CTNAG 1 cut(s) 819
DinI GGCGCC 2 cut(s) 223, 531
DpnI GATC 2 cut(s) 134, 215
DpnII GATC 2 cut(s) 132, 213
DriI GACNNNNNGTC 2 cut(s) 247, 283
EaeI YGGCCR 3 cut(s) 306, 509, 825
EagI CGGCCG 2 cut(s) 509, 825
Eam1104I CTCTTC 2 cut(s) 44, 499
Eam1105I GACNNNNNGTC 2 cut(s) 247, 283
EarI CTCTTC 2 cut(s) 44, 499
EciI GGCGGA 3 cut(s) 176, 251, 628
EclXI CGGCCG 2 cut(s) 509, 825
Eco130I CCWWGG 2 cut(s) 33, 623
Eco47I GGWCC 2 cut(s) 163, 837
Eco52I CGGCCG 2 cut(s) 509, 825
Eco57I CTGAAG 1 cut(s) 881
Eco81I CCTNAGG 1 cut(s) 819
Eco88I CYCGRG 2 cut(s) 209, 650
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 101, 224, 608
EcoT14I CCWWGG 2 cut(s) 33, 623
EgeI GGCGCC 2 cut(s) 223, 531
EheI GGCGCC 2 cut(s) 223, 531
ErhI CCWWGG 2 cut(s) 33, 623
FaeI CATG 5 cut(s) 17, 37, 370, 773, 844
FaqI GGGAC 1 cut(s) 591
FatI CATG 5 cut(s) 13, 33, 366, 769, 840
FauI CCCGC 3 cut(s) 326, 371, 415
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 9 cut(s) 11, 190, 265, 474, 559, 562, 707, 825, 893
FokI GGATG 4 cut(s) 16, 439, 653, 797
Fsp4HI GCNGC 9 cut(s) 11, 190, 265, 474, 559, 562, 707, 825, 893
GlaI GCGC 4 cut(s) 55, 138, 223, 531
GluI GCNGC 9 cut(s) 11, 190, 265, 474, 559, 562, 707, 825, 893
HaeII RGCGCY 3 cut(s) 57, 225, 533
HaeIII GGCC 5 cut(s) 82, 101, 308, 511, 827
HapII CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
HgaI GACGC 5 cut(s) 15, 100, 133, 237, 465
HhaI GCGC 4 cut(s) 56, 139, 224, 532
Hin1I GRCGYC 3 cut(s) 222, 248, 530
Hin1II CATG 5 cut(s) 17, 37, 370, 773, 844
Hin6I GCGC 4 cut(s) 54, 137, 222, 530
HinP1I GCGC 4 cut(s) 54, 137, 222, 530
HinfI GANTC 8 cut(s) 229, 242, 284, 437, 646, 728, 749, 844
HpaII CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
HphI GGTGA 3 cut(s) 307, 319, 589
Hpy166II GTNNAC 2 cut(s) 352, 832
Hpy188I TCNGA 5 cut(s) 234, 241, 292, 733, 754
Hpy188III TCNNGA 4 cut(s) 130, 209, 211, 650
Hpy8I GTNNAC 2 cut(s) 352, 832
Hpy99I CGWCG 3 cut(s) 88, 253, 292
HpyAV CCTTC 2 cut(s) 392, 664
HpyCH4III ACNGT 1 cut(s) 808
HpyCH4IV ACGT 3 cut(s) 126, 299, 303
HpyCH4V TGCA 2 cut(s) 718, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
HpyF3I CTNAG 1 cut(s) 819
HpySE526I ACGT 3 cut(s) 126, 299, 303
Hsp92I GRCGYC 3 cut(s) 222, 248, 530
Hsp92II CATG 5 cut(s) 17, 37, 370, 773, 844
HspAI GCGC 4 cut(s) 54, 137, 222, 530
KasI GGCGCC 2 cut(s) 221, 529
Kpn2I TCCGGA 1 cut(s) 129
KroI GCCGGC 1 cut(s) 554
KroNI GCCGGC 1 cut(s) 556
Kzo9I GATC 2 cut(s) 132, 213
LguI GCTCTTC 2 cut(s) 44, 499
LmnI GCTCC 2 cut(s) 264, 673
Lsp1109I GCAGC 5 cut(s) 22, 460, 545, 548, 718
LweI GCATC 3 cut(s) 60, 631, 775
MaeII ACGT 3 cut(s) 126, 299, 303
MaeIII GTNAC 2 cut(s) 295, 325
MalI GATC 2 cut(s) 134, 215
MboI GATC 2 cut(s) 132, 213
MboII GAAGA 3 cut(s) 61, 486, 788
MhlI GDGCHC 1 cut(s) 623
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 58, 484, 699, 735, 762
MluNI TGGCCA 1 cut(s) 308
Mly113I GGCGCC 2 cut(s) 222, 530
MlyI GAGTC 2 cut(s) 236, 293
MmeI TCCRAC 3 cut(s) 270, 366, 431
Mox20I TGGCCA 1 cut(s) 308
MroI TCCGGA 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 554
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 483, 698
MslI CAYNNNNRTG 2 cut(s) 200, 870
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 9 cut(s) 115, 130, 161, 271, 330, 489, 508, 555, 575
MspR9I CCNGG 3 cut(s) 103, 226, 610
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 3 cut(s) 103, 226, 610
MvnI CGCG 3 cut(s) 137, 192, 267
MwoI GCNNNNNNNGC 5 cut(s) 79, 186, 198, 634, 715
NaeI GCCGGC 1 cut(s) 556
NarI GGCGCC 2 cut(s) 222, 530
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 132, 213
NgoMIV GCCGGC 1 cut(s) 554
NlaIII CATG 5 cut(s) 17, 37, 370, 773, 844
NlaIV GGNNCC 3 cut(s) 6, 223, 531
NmeAIII GCCGAG 2 cut(s) 77, 224
NmuCI GTSAC 2 cut(s) 295, 325
NspI RCATGY 1 cut(s) 773
NspV TTCGAA 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 209
PciSI GCTCTTC 2 cut(s) 44, 499
PcsI WCGNNNNNNNCGW 5 cut(s) 141, 245, 296, 309, 641
PctI GAATGC 1 cut(s) 424
PdiI GCCGGC 1 cut(s) 556
PfeI GAWTC 6 cut(s) 229, 437, 646, 728, 749, 844
Pfl23II CGTACG 1 cut(s) 300
PkrI GCNGC 9 cut(s) 12, 191, 266, 475, 560, 563, 708, 826, 894
PleI GAGTC 2 cut(s) 236, 292
PluTI GGCGCC 2 cut(s) 225, 533
PpsI GAGTC 2 cut(s) 236, 292
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 3 cut(s) 101, 224, 608
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 101, 224, 608
PspLI CGTACG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 6, 223, 531
PspPI GGNCC 3 cut(s) 80, 163, 837
PstNI CAGNNNCTG 2 cut(s) 73, 731
RsaI GTAC 3 cut(s) 65, 302, 833
RsaNI GTAC 3 cut(s) 64, 301, 832
RseI CAYNNNNRTG 2 cut(s) 200, 870
SapI GCTCTTC 2 cut(s) 44, 499
SaqAI TTAA 2 cut(s) 483, 698
SatI GCNGC 9 cut(s) 11, 190, 265, 474, 559, 562, 707, 825, 893
Sau3AI GATC 2 cut(s) 132, 213
Sau96I GGNCC 3 cut(s) 80, 163, 837
SchI GAGTC 2 cut(s) 236, 293
ScrFI CCNGG 3 cut(s) 103, 226, 610
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 3 cut(s) 60, 631, 775
SfcI CTRYAG 1 cut(s) 537
SfoI GGCGCC 2 cut(s) 223, 531
Sfr274I CTCGAG 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 108
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 2 cut(s) 163, 837
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 200, 870
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 5 cut(s) 58, 484, 699, 735, 762
SspDI GGCGCC 2 cut(s) 221, 529
StyD4I CCNGG 3 cut(s) 101, 224, 608
StyI CCWWGG 2 cut(s) 33, 623
TaaI ACNGT 1 cut(s) 808
TaiI ACGT 3 cut(s) 129, 302, 306
TaqI TCGA 3 cut(s) 108, 150, 210
TasI AATT 5 cut(s) 58, 484, 699, 735, 762
TatI WGTACW 1 cut(s) 831
TauI GCSGC 3 cut(s) 192, 267, 827
TfiI GAWTC 6 cut(s) 229, 437, 646, 728, 749, 844
Tru1I TTAA 2 cut(s) 483, 698
Tru9I TTAA 2 cut(s) 483, 698
TseFI GTSAC 2 cut(s) 295, 325
TseI GCWGC 6 cut(s) 10, 473, 558, 561, 706, 892
Tsp45I GTSAC 2 cut(s) 295, 325
TspDTI ATGAA 4 cut(s) 762, 788, 857, 875
VpaK11BI GGWCC 2 cut(s) 163, 837
VspI ATTAAT 1 cut(s) 483
XceI RCATGY 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.