AT1G01520
MYB Family

ubiquitin modification-dependent histone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006457
Physical Location & Seq
Forward (+)
190408 .. 192436
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01520.3

Sequence Viewer

Length: 864 bp
ATGGTGACTGTAAACCCTAGCCAAGCTCATTGTTTGCCTATGAAAATGAGTCTACCGGGTTTCAATACTCTTCCCCACACGGCAACAACGATACCGGTTTCCATACGGAGCAATAGGACGATGTCGTTTTTTGAGGATCCAACAAAGAAGGTTAGAAAGCCTTACACTATCACCAAATCTAGAGAGAACTGGACGGAGCAAGAACACGACAAGTTCCTTGAAGCCCTTCATCTATTTGACCGGGATTGGAAGAAAATAAAGGCCTTTGTTGGATCAAAAACAGTGATACAGATACGAAGCCACGCACAGAAGTACTTTCTCAAAGTTCAGAAGAATGGGACTAAAGAACATCTCCCACCTCCTCGACCAAAGAGGAAAGCCAATCACCCATATCCACAAAAAGCTCCTAAATTTACTCTTTCTTCTTCAAACGCATTATTTCAACATGACTACTTATACAACACTAATTCACATCCGGTGATTAGCACCACCCGTAAGCATGGATTAGTGCATTGCGATGTTAGTATACCAAGTTCTGTTATCAAAGAGGAATTTGGTGTCTCAGAGAACTGTTGCAGCACTAGTAGTAGTAGAGATAAGCAGAGGACTAGAATCGTTACAGAGACAAATGACCAAGAAAGTTGTGGAAAGCCACATAGAGTGGCGCCAAATTTCGCTGAAGTTTACAATTTTATAGGAAGTGTGTTTGATCCTAAAACAACAGGTCATGTCAAGAGATTAAAGGAAATGGATCCAATAAATCTTGAGACGGTTCTCTTACTGATGAAAAATTTATCTGTAAACCTGACGAGTCCCGAGTTTGATGAACAACGGAAGTTGATATCATCTTACAACGCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0001190 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032922 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042493 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.8

Weight (kDa)

9.61

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 61 - 106 2.3e-12 Myb-like DNA-binding domain
RVE6 PF24904 223 - 279 5.5e-31 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccI GTMKAC 2 cut(s) 52, 526
AclWI GGATC 6 cut(s) 131, 144, 280, 704, 746, 759
AcsI RAATTY 4 cut(s) 410, 551, 670, 790
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 1 cut(s) 314
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 4 cut(s) 64, 221, 429, 443
AhlI ACTAGT 1 cut(s) 581
AluBI AGCT 2 cut(s) 26, 404
AluI AGCT 2 cut(s) 26, 404
Alw26I GTCTC 3 cut(s) 565, 617, 761
AlwI GGATC 6 cut(s) 131, 144, 280, 704, 746, 759
Ama87I CYCGRG 1 cut(s) 815
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 576
ApoI RAATTY 4 cut(s) 410, 551, 670, 790
AsiGI ACCGGT 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 667
AsuC2I CCSGG 2 cut(s) 57, 242
AsuHPI GGTGA 4 cut(s) 16, 163, 377, 490
AvaI CYCGRG 1 cut(s) 815
BamHI GGATCC 2 cut(s) 136, 751
BanI GGYRCC 1 cut(s) 664
BbvI GCAGC 1 cut(s) 588
BceAI ACGGC 1 cut(s) 96
BcnI CCSGG 2 cut(s) 57, 242
BcoDI GTCTC 3 cut(s) 565, 617, 761
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 4 cut(s) 18, 180, 582, 609
BfoI RGCGCY 1 cut(s) 668
BisI GCNGC 1 cut(s) 577
BlsI GCNGC 1 cut(s) 578
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 2 cut(s) 57, 242
BmeT110I CYCGRG 1 cut(s) 815
BmiI GGNNCC 3 cut(s) 138, 666, 753
BmrFI CCNGG 2 cut(s) 57, 242
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 2 cut(s) 57, 242
BsaHI GRCGYC 1 cut(s) 665
BsaWI WCCGGW 2 cut(s) 94, 475
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 194, 858
Bse3DI GCAATG 1 cut(s) 511
BseGI GGATG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 194, 858
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 588
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 664
BshTI ACCGGT 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 4 cut(s) 56, 95, 241, 476
BslFI GGGAC 2 cut(s) 352, 798
BsmAI GTCTC 3 cut(s) 565, 617, 761
BsmBI CGTCTC 1 cut(s) 761
BsmFI GGGAC 2 cut(s) 352, 798
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 815
Bsp143I GATC 4 cut(s) 136, 272, 709, 751
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 575
BspLI GGNNCC 3 cut(s) 138, 666, 753
BspPI GGATC 6 cut(s) 131, 144, 280, 704, 746, 759
BspT107I GGYRCC 1 cut(s) 664
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 194, 858
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 4 cut(s) 136, 272, 709, 751
BssNAI GTATAC 1 cut(s) 527
BssNI GRCGYC 1 cut(s) 665
Bst1107I GTATAC 1 cut(s) 527
Bst4CI ACNGT 4 cut(s) 10, 283, 572, 772
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 665
BstDEI CTNAG 1 cut(s) 562
BstF5I GGATG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 4 cut(s) 139, 275, 712, 754
BstMAI GTCTC 3 cut(s) 565, 617, 761
BstMBI GATC 4 cut(s) 136, 272, 709, 751
BstSCI CCNGG 2 cut(s) 55, 240
BstV1I GCAGC 1 cut(s) 588
BstX2I RGATCY 2 cut(s) 136, 751
BstYI RGATCY 2 cut(s) 136, 751
BstZ17I GTATAC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 313
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 3 cut(s) 446, 500, 728
CviJI RGCY 9 cut(s) 21, 26, 160, 224, 263, 300, 380, 404, 652
CviKI_1 RGCY 9 cut(s) 21, 26, 160, 224, 263, 300, 380, 404, 652
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 562
DinI GGCGCC 1 cut(s) 666
DpnI GATC 4 cut(s) 138, 274, 711, 753
DpnII GATC 4 cut(s) 136, 272, 709, 751
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 263
Eco32I GATATC 1 cut(s) 843
Eco57I CTGAAG 1 cut(s) 699
Eco88I CYCGRG 1 cut(s) 815
EcoRV GATATC 1 cut(s) 843
EgeI GGCGCC 1 cut(s) 666
EheI GGCGCC 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 761
FaeI CATG 3 cut(s) 449, 503, 731
FaqI GGGAC 2 cut(s) 352, 798
FatI CATG 3 cut(s) 445, 499, 727
FblI GTMKAC 2 cut(s) 52, 526
Fnu4HI GCNGC 1 cut(s) 577
FokI GGATG 1 cut(s) 459
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 4 cut(s) 18, 180, 582, 609
GlaI GCGC 1 cut(s) 666
GluI GCNGC 1 cut(s) 577
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 1 cut(s) 263
HapII CCGG 4 cut(s) 56, 95, 241, 476
HhaI GCGC 1 cut(s) 667
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 3 cut(s) 449, 503, 731
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 3 cut(s) 49, 612, 811
HpaII CCGG 4 cut(s) 56, 95, 241, 476
HphI GGTGA 4 cut(s) 16, 163, 377, 490
Hpy166II GTNNAC 5 cut(s) 13, 53, 527, 685, 802
Hpy188I TCNGA 2 cut(s) 330, 565
Hpy188III TCNNGA 4 cut(s) 180, 733, 764, 815
Hpy8I GTNNAC 5 cut(s) 13, 53, 527, 685, 802
HpyAV CCTTC 2 cut(s) 142, 236
HpyCH4III ACNGT 4 cut(s) 10, 283, 572, 772
HpyCH4V TGCA 2 cut(s) 511, 576
HpyF3I CTNAG 1 cut(s) 562
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 3 cut(s) 449, 503, 731
HspAI GCGC 1 cut(s) 665
KasI GGCGCC 1 cut(s) 664
Kzo9I GATC 4 cut(s) 136, 272, 709, 751
LmnI GCTCC 3 cut(s) 108, 196, 409
LpnPI CCDG 7 cut(s) 69, 108, 175, 254, 489, 708, 818
Lsp1109I GCAGC 1 cut(s) 588
MaeI CTAG 4 cut(s) 18, 180, 582, 609
MaeIII GTNAC 2 cut(s) 4, 616
MalI GATC 4 cut(s) 138, 274, 711, 753
MboI GATC 4 cut(s) 136, 272, 709, 751
MboII GAAGA 5 cut(s) 62, 262, 343, 414, 417
MflI RGATCY 2 cut(s) 136, 751
MluCI AATT 6 cut(s) 410, 466, 551, 670, 688, 790
Mly113I GGCGCC 1 cut(s) 665
MlyI GAGTC 2 cut(s) 58, 820
MmeI TCCRAC 2 cut(s) 164, 250
MnlI CCTC 6 cut(s) 127, 366, 369, 372, 541, 597
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 516
MspI CCGG 4 cut(s) 56, 95, 241, 476
MspR9I CCNGG 2 cut(s) 57, 242
NarI GGCGCC 1 cut(s) 665
NciI CCSGG 2 cut(s) 57, 242
NdeII GATC 4 cut(s) 136, 272, 709, 751
NlaIII CATG 3 cut(s) 449, 503, 731
NlaIV GGNNCC 3 cut(s) 138, 666, 753
NmuCI GTSAC 1 cut(s) 4
PceI AGGCCT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 612
PflFI GACNNNGTC 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 1 cut(s) 578
PleI GAGTC 2 cut(s) 57, 819
PluTI GGCGCC 1 cut(s) 668
PpsI GAGTC 2 cut(s) 57, 819
PspN4I GGNNCC 3 cut(s) 138, 666, 753
PsrI GAACNNNNNNTAC 2 cut(s) 517, 549
PsuI RGATCY 2 cut(s) 136, 751
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 4 cut(s) 136, 272, 709, 751
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 2 cut(s) 58, 820
ScrFI CCNGG 2 cut(s) 57, 242
SetI ASST 6 cut(s) 28, 153, 361, 406, 727, 807
SfoI GGCGCC 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 6 cut(s) 410, 466, 551, 670, 688, 790
SseBI AGGCCT 1 cut(s) 263
SspDI GGCGCC 1 cut(s) 664
SspMI CTAG 4 cut(s) 18, 180, 582, 609
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 55, 240
TaaI ACNGT 4 cut(s) 10, 283, 572, 772
TaqI TCGA 1 cut(s) 364
TasI AATT 6 cut(s) 410, 466, 551, 670, 688, 790
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 576
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 56, 218, 800, 840
TspGWI ACGGA 3 cut(s) 121, 209, 847
TspRI CASTG 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 121
XapI RAATTY 4 cut(s) 410, 551, 670, 790
XbaI TCTAGA 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 52, 526
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 4 cut(s) 18, 180, 582, 609
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.