Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003245.1

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Forward (+)

29576 .. 31735

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003245.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggtgtctgtgaacccaaacccagcacctcagggtttctacttattcgatcccaccaacatgggccttcccggcctcaattccgtgccgccgcccacgacgccttctacgaccaccaccaccacgtcgtccgcgccccaaaacgccgcgtcgttggccgaagatctgagcaagaagatccggaaaccctatacgattaccaagtccagggagagctggactgaacaggagcacgacaagtttctagaagctctccagctatttgaccgcgactggaagaagattgaagcatttattggctcaaaaacggttattcagatacgtagccatgcacaaaagtactttttgaaggttcagaaaaaagggacaagcgagcatgtacctcctcctcggccaaagaggaaagcaactcatccatacccacaaaaagctcctaaaagtgctccagtagcatctcaagttgttgtgccatttgaatcctcatctgctttgcttgaacatggatatgcttaccagccagactcctcatttgtgcttggcactccagttaccagtgcaagtttatcttcctggagtcatagttatgtgcctccagtcaatgcatcacaagtaactaaagatgatggaaagctagctggttcaacagatgcacagaactcttgctacagtagtagtaatgaaagcaagcctacaacttggctaatgggtgagacagttggtcgagcatgtcatcgccagccacagagaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

27.34

Weight (kDa)

9.41

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	134, 149, 270
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	89, 92, 132, 147, 268
AclWI	GGATC	2 cut(s)	44, 172
AcoI	YGGCCR	2 cut(s)	156, 392
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	341, 381
AfiI	CCNNNNNNNGG	2 cut(s)	207, 746
AgsI	TTSAA	5 cut(s)	287, 349, 476, 497, 642
AhdI	GACNNNNNGTC	1 cut(s)	717
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	206, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	6 cut(s)	216, 251, 259, 431, 631, 635
AluI	AGCT	6 cut(s)	216, 251, 259, 431, 631, 635
Alw21I	GWGCWC	2 cut(s)	234, 445
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	44, 172
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	64, 73, 156, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	719
AsuNHI	GCTAGC	1 cut(s)	631
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	234, 445
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	208, 571
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	245, 632
BfmI	CTRYAG	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	3 cut(s)	89, 92, 147
BlsI	GCNGC	3 cut(s)	90, 93, 148
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	3 cut(s)	72, 208, 571
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	72, 208, 571
BmsI	GCATC	3 cut(s)	461, 611, 637
BmtI	GCTAGC	1 cut(s)	635
BpmI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	207, 389
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 746
Bse1I	ACTGG	5 cut(s)	278, 446, 545, 552, 593
Bse21I	CCTNAGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	208, 571
BseDI	CCNNGG	2 cut(s)	207, 389
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	207, 746
BseMII	CTCAG	2 cut(s)	44, 158
BseNI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BseRI	GAGGAG	3 cut(s)	375, 378, 514
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	3 cut(s)	134, 149, 270
BshFI	GGCC	4 cut(s)	66, 75, 158, 394
BsiHKAI	GWGCWC	2 cut(s)	234, 445
BsiSI	CCGG	2 cut(s)	72, 181
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	207, 746
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	4 cut(s)	66, 75, 158, 394
Bsp1286I	GDGCHC	2 cut(s)	234, 445
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	49, 163, 177
BspACI	CCGC	5 cut(s)	89, 92, 132, 147, 268
BspANI	GGCC	4 cut(s)	66, 75, 158, 394
BspCNI	CTCAG	2 cut(s)	43, 159
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	134, 149, 270
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	2 cut(s)	44, 172
BsrI	ACTGG	5 cut(s)	278, 446, 545, 552, 593
BssECI	CCNNGG	2 cut(s)	207, 389
BssMI	GATC	3 cut(s)	49, 163, 177
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	208, 571
Bst4CI	ACNGT	3 cut(s)	310, 668, 715
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	374, 633, 686, 737
BstDEI	CTNAG	2 cut(s)	30, 167
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	3 cut(s)	134, 149, 270
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	52, 166, 180
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	3 cut(s)	49, 163, 177
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
BstNI	CCWGG	2 cut(s)	208, 571
BstNSI	RCATGY	2 cut(s)	380, 729
BstSCI	CCNGG	3 cut(s)	70, 206, 569
BstSFI	CTRYAG	1 cut(s)	664
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	3 cut(s)	134, 149, 270
BstX2I	RGATCY	2 cut(s)	163, 177
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	2 cut(s)	163, 177
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	66, 75, 158, 394
BtgZI	GCGATG	1 cut(s)	716
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	4 cut(s)	374, 633, 686, 737
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	109, 138
Csp6I	GTAC	2 cut(s)	340, 380
CviAII	CATG	5 cut(s)	61, 329, 377, 500, 726
CviQI	GTAC	2 cut(s)	340, 380
DdeI	CTNAG	2 cut(s)	30, 167
DpnI	GATC	3 cut(s)	51, 165, 179
DpnII	GATC	3 cut(s)	49, 163, 177
DriI	GACNNNNNGTC	1 cut(s)	717
EaeI	YGGCCR	2 cut(s)	156, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	206, 569
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	5 cut(s)	64, 332, 380, 503, 729
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	60, 328, 376, 499, 725
Fnu4HI	GCNGC	3 cut(s)	89, 92, 147
FokI	GGATG	1 cut(s)	399
Fsp4HI	GCNGC	3 cut(s)	89, 92, 147
FspBI	CTAG	2 cut(s)	245, 632
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	89, 92, 147
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	5 cut(s)	239, 429, 528, 576, 592
HaeIII	GGCC	4 cut(s)	66, 75, 158, 394
HapII	CCGG	2 cut(s)	72, 181
HgaI	GACGC	2 cut(s)	109, 138
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	64, 332, 380, 503, 729
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	3 cut(s)	476, 521, 574
HpaII	CCGG	2 cut(s)	72, 181
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	168, 318, 357
Hpy188III	TCNNGA	2 cut(s)	181, 245
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	103, 130, 154
HpyAV	CCTTC	3 cut(s)	77, 114, 343
HpyCH4III	ACNGT	3 cut(s)	310, 668, 715
HpyCH4IV	ACGT	2 cut(s)	125, 322
HpyCH4V	TGCA	4 cut(s)	332, 557, 602, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
HpyF3I	CTNAG	2 cut(s)	30, 167
HpySE526I	ACGT	2 cut(s)	125, 322
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	64, 332, 380, 503, 729
HspAI	GCGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	49, 163, 177
LmnI	GCTCC	3 cut(s)	229, 436, 448
LweI	GCATC	3 cut(s)	461, 611, 637
MaeI	CTAG	2 cut(s)	245, 632
MaeII	ACGT	2 cut(s)	125, 322
MaeIII	GTNAC	2 cut(s)	547, 610
MalI	GATC	3 cut(s)	51, 165, 179
MboI	GATC	3 cut(s)	49, 163, 177
MboII	GAAGA	5 cut(s)	173, 187, 289, 292, 558
MflI	RGATCY	2 cut(s)	163, 177
MhlI	GDGCHC	2 cut(s)	234, 445
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	515, 583
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	1 cut(s)	751
MslI	CAYNNNNRTG	3 cut(s)	59, 504, 582
MspI	CCGG	2 cut(s)	72, 181
MspR9I	CCNGG	3 cut(s)	72, 208, 571
MvaI	CCWGG	2 cut(s)	208, 571
MvnI	CGCG	3 cut(s)	134, 149, 270
MwoI	GCNNNNNNNGC	4 cut(s)	72, 100, 155, 449
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	49, 163, 177
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	5 cut(s)	64, 332, 380, 503, 729
NmeAIII	GCCGAG	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	2 cut(s)	380, 729
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	90, 93, 148
PleI	GAGTC	2 cut(s)	515, 582
PpsI	GAGTC	2 cut(s)	515, 582
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	206, 569
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	206, 569
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PsuI	RGATCY	2 cut(s)	163, 177
RsaI	GTAC	2 cut(s)	341, 381
RsaNI	GTAC	2 cut(s)	340, 380
RseI	CAYNNNNRTG	3 cut(s)	59, 504, 582
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	3 cut(s)	89, 92, 147
Sau3AI	GATC	3 cut(s)	49, 163, 177
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	2 cut(s)	515, 583
ScrFI	CCNGG	3 cut(s)	72, 208, 571
SduI	GDGCHC	2 cut(s)	234, 445
SfaNI	GCATC	3 cut(s)	461, 611, 637
SfcI	CTRYAG	1 cut(s)	664
SfiI	GGCCNNNNNGGCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	3 cut(s)	59, 504, 582
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SnaBI	TACGTA	1 cut(s)	323
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	5 cut(s)	89, 92, 132, 147, 268
SspMI	CTAG	2 cut(s)	245, 632
StyD4I	CCNGG	3 cut(s)	70, 206, 569
TaaI	ACNGT	3 cut(s)	310, 668, 715
TaiI	ACGT	2 cut(s)	128, 325
TaqI	TCGA	2 cut(s)	48, 721
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	3 cut(s)	91, 94, 149
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	380, 729
XspI	CTAG	2 cut(s)	245, 632
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.