Rh1DG265500
MYB Family

reveille

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006457
Physical Location & Seq
Reverse (-)
48255993 .. 48262209
6217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG265500.1

Sequence Viewer

Length: 720 bp
ATGGTGTCTGTGAACCCAAACCCAGCACCTCAGGGTTTTTACTTATTCGATCCCACCAACATGGGCCTCCCCGGCCTCAATTCCATGCCGCCGCCCACGACGCCTTCTACGACGACCACCACCACGTCGTCCGCGCCCCAAAACGCCGCGTCGTTGGCCGACGATCTGAGCAAGAAGATCCGGAAACCCTATACGATTACCAAGTCCAGGGAGAGCTGGACTGAACAGGAGCACGACAAGTTTCTAGAAGCTCTCCAGCTATTTGACCGCGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATTCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGTGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATACCCACAAAAAGCTCCTAAAAGTGCTCCAGTAGCATCTCAAGTTGTTGTGCCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATGCTTACCAGCCAGACTCCTCATTTGTGCTTGGCACTCCAGTTACCAGTGCAAGTTTATCTTCCTGGAGTCATAGTTATGTGCCTCCAGTCAATGCATCACAAATAACTAAAGGTTTCAGTTTTTCCCACCTATCTTGGTCTTTATTTATTTTTTTGTTTTTTTTTTTGTTTTTCGTGATAATAAGAAGTTTGAAGTTTGCTCTATGTTGTTAA

Protein Analysis

239

Amino Acids

26.63

Weight (kDa)

9.62

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 70 - 115 4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 134, 149, 270
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 5 cut(s) 89, 92, 132, 147, 268
AclWI GGATC 2 cut(s) 44, 172
AcoI YGGCCR 2 cut(s) 156, 392
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 2 cut(s) 341, 381
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 5 cut(s) 287, 349, 476, 497, 700
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 206, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 4 cut(s) 216, 251, 259, 431
AluI AGCT 4 cut(s) 216, 251, 259, 431
Alw21I GWGCWC 2 cut(s) 234, 445
AlwI GGATC 2 cut(s) 44, 172
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 4 cut(s) 64, 73, 156, 392
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 234, 445
BciT130I CCWGG 2 cut(s) 208, 571
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 72
BisI GCNGC 3 cut(s) 89, 92, 147
BlsI GCNGC 3 cut(s) 90, 93, 148
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 72, 208, 571
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 3 cut(s) 72, 208, 571
BmsI GCATC 2 cut(s) 461, 611
BpmI CTGGAG 5 cut(s) 239, 429, 528, 576, 592
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 70, 207, 389
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 5 cut(s) 278, 446, 545, 552, 593
Bse21I CCTNAGG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 2 cut(s) 208, 571
BseDI CCNNGG 3 cut(s) 70, 207, 389
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 44, 158
BseNI ACTGG 5 cut(s) 278, 446, 545, 552, 593
BseRI GAGGAG 3 cut(s) 375, 378, 514
BseYI CCCAGC 1 cut(s) 22
Bsh1236I CGCG 3 cut(s) 134, 149, 270
BshFI GGCC 4 cut(s) 66, 75, 158, 394
BsiHKAI GWGCWC 2 cut(s) 234, 445
BsiSI CCGG 2 cut(s) 72, 181
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 4 cut(s) 66, 75, 158, 394
Bsp1286I GDGCHC 2 cut(s) 234, 445
Bsp13I TCCGGA 1 cut(s) 180
Bsp143I GATC 3 cut(s) 49, 163, 177
BspACI CCGC 5 cut(s) 89, 92, 132, 147, 268
BspANI GGCC 4 cut(s) 66, 75, 158, 394
BspCNI CTCAG 2 cut(s) 43, 159
BspEI TCCGGA 1 cut(s) 180
BspFNI CGCG 3 cut(s) 134, 149, 270
BspPI GGATC 2 cut(s) 44, 172
BsrI ACTGG 5 cut(s) 278, 446, 545, 552, 593
BssECI CCNNGG 3 cut(s) 70, 207, 389
BssMI GATC 3 cut(s) 49, 163, 177
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 208, 571
Bst4CI ACNGT 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 30, 167
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 3 cut(s) 134, 149, 270
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 52, 166, 180
BstMBI GATC 3 cut(s) 49, 163, 177
BstMWI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
BstNI CCWGG 2 cut(s) 208, 571
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 3 cut(s) 70, 206, 569
BstSNI TACGTA 1 cut(s) 323
BstUI CGCG 3 cut(s) 134, 149, 270
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 30
BsuRI GGCC 4 cut(s) 66, 75, 158, 394
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 559
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 2 cut(s) 109, 138
Csp6I GTAC 2 cut(s) 340, 380
CspCI CAANNNNNGTGG 2 cut(s) 623, 658
CviAII CATG 5 cut(s) 61, 85, 329, 377, 500
CviQI GTAC 2 cut(s) 340, 380
DdeI CTNAG 2 cut(s) 30, 167
DpnI GATC 3 cut(s) 51, 165, 179
DpnII GATC 3 cut(s) 49, 163, 177
EaeI YGGCCR 2 cut(s) 156, 392
Eco105I TACGTA 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 206, 569
EcoT22I ATGCAT 1 cut(s) 604
FaeI CATG 5 cut(s) 64, 88, 332, 380, 503
FalI AAGNNNNNCTT 2 cut(s) 550, 582
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 60, 84, 328, 376, 499
Fnu4HI GCNGC 3 cut(s) 89, 92, 147
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 3 cut(s) 89, 92, 147
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 135
GluI GCNGC 3 cut(s) 89, 92, 147
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 5 cut(s) 239, 429, 528, 576, 592
HaeIII GGCC 4 cut(s) 66, 75, 158, 394
HapII CCGG 2 cut(s) 72, 181
HgaI GACGC 2 cut(s) 109, 138
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 5 cut(s) 64, 88, 332, 380, 503
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 3 cut(s) 476, 521, 574
HpaII CCGG 2 cut(s) 72, 181
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 168, 318, 357
Hpy188III TCNNGA 3 cut(s) 181, 245, 682
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 5 cut(s) 103, 115, 130, 154, 164
HpyAV CCTTC 2 cut(s) 114, 343
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 125, 322
HpyCH4V TGCA 3 cut(s) 332, 557, 602
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
HpyF3I CTNAG 2 cut(s) 30, 167
HpySE526I ACGT 2 cut(s) 125, 322
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 5 cut(s) 64, 88, 332, 380, 503
HspAI GCGC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 180
Kzo9I GATC 3 cut(s) 49, 163, 177
LmnI GCTCC 3 cut(s) 229, 436, 448
LweI GCATC 2 cut(s) 461, 611
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 125, 322
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 51, 165, 179
MboI GATC 3 cut(s) 49, 163, 177
MboII GAAGA 4 cut(s) 187, 289, 292, 558
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 234, 445
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 515, 583
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 180
MseI TTAA 1 cut(s) 718
MslI CAYNNNNRTG 3 cut(s) 59, 504, 582
MspI CCGG 2 cut(s) 72, 181
MspR9I CCNGG 3 cut(s) 72, 208, 571
MvaI CCWGG 2 cut(s) 208, 571
MvnI CGCG 3 cut(s) 134, 149, 270
MwoI GCNNNNNNNGC 4 cut(s) 72, 100, 155, 449
NciI CCSGG 1 cut(s) 72
NdeII GATC 3 cut(s) 49, 163, 177
NlaIII CATG 5 cut(s) 64, 88, 332, 380, 503
NmeAIII GCCGAG 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 569
PkrI GCNGC 3 cut(s) 90, 93, 148
PleI GAGTC 2 cut(s) 515, 582
PpsI GAGTC 2 cut(s) 515, 582
Ppu21I YACGTR 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 206, 569
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 206, 569
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 2 cut(s) 341, 381
RsaNI GTAC 2 cut(s) 340, 380
RseI CAYNNNNRTG 3 cut(s) 59, 504, 582
SaqAI TTAA 1 cut(s) 718
SatI GCNGC 3 cut(s) 89, 92, 147
Sau3AI GATC 3 cut(s) 49, 163, 177
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 2 cut(s) 515, 583
ScrFI CCNGG 3 cut(s) 72, 208, 571
SduI GDGCHC 2 cut(s) 234, 445
SfaNI GCATC 2 cut(s) 461, 611
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SmiMI CAYNNNNRTG 3 cut(s) 59, 504, 582
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 1 cut(s) 79
SsiI CCGC 5 cut(s) 89, 92, 132, 147, 268
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 70, 206, 569
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 128, 325
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 339
TauI GCSGC 3 cut(s) 91, 94, 149
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 1 cut(s) 718
Tru9I TTAA 1 cut(s) 718
TscAI CASTG 1 cut(s) 559
TspRI CASTG 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 380
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.