Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Reverse (-)

17414418 .. 17419663

Gene Structure 5246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1070000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTGTCTCTGAATCCAAACCCAGCTCAAGGTTTCTACTTATTTGATCCCATGAATACCAATATGGGCCTTCCGGGTCTCAATCCTATGCCGCCGCCGACAACTGGTGCTGCTTCAGCTACGGCGGCGACCAGTACGACTGCTGCCTGCACGTCTTCGTCCGCGCCTGCAAACGCCGCGTCGATGTCGGCGGATGATCAGAGCAAGAAAATCCGGAAACCGTATACGATTACCAAGTCGAGAGAGAGCTGGACGGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTTCAGCTGTTTGATCGTGACTGGAAGAAGATTGAAGCATTTATTGGCTCAAAAACGGTTATCCAGATACGAAGTCATGCACAGAAATACTTTTTGAAGGTTCAGAAGAAAGGGACAAGTGAACATGTACCTCCACCTCGGCCAAAGAGGAAAGCGACTCATCCATACCCACAAAAGGCTCCAAAAAGTGTTGTATCTCAAGTAGCTGGGCCGTTTCAGTCCTCATCTGACTTGCTTGAACATGGATATGTTTACCAGCCAGATTCCTCAATTGTGCTTGGAACTCCAGTTAACGCTGCAACTTTATTATCTTGGAGTTATAACTCTGTGCCACCAGTCAACGTGTCGCAAACAATTAAAGACGAAGGAAGGTTATCTGGGCCAACTGTTACACATAACTCTTGCTACAGTAGTAGCAATGAAAGCAACCCGACAAATTGGAAAGTGAGTGAGACAGTTGATCGAGTAGATCCTGGCCAGCCACACAGAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTTATCGGAAGTGTATTTGACCCCAGTGCAATTAGTCATTTGGAGAGACTGAGACAATTGGACCCCATAAATTTCGAAACAGCACTTTTGCTGATGCGGAACCTCTCCATTAATTTGACAAGTCCCGAGTTTCAGGATCATAAAGCTAATTACATCATATGCTGTCGGCTCCGACAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

329

Amino Acids

36.26

Weight (kDa)

9.03

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	81 - 126	6.6e-12	Myb-like DNA-binding domain
RVE6	PF24904	260 - 316	6.3e-31	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	2 cut(s)	164, 179
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	7 cut(s)	92, 95, 125, 162, 177, 191, 901
AclWI	GGATC	3 cut(s)	41, 749, 948
AcoI	YGGCCR	2 cut(s)	425, 760
AcsI	RAATTY	2 cut(s)	803, 874
AcuI	CTGAAG	2 cut(s)	99, 272
AfaI	GTAC	2 cut(s)	136, 414
AfiI	CCNNNNNNNGG	3 cut(s)	29, 104, 460
AflIII	ACRYGT	2 cut(s)	409, 627
AgsI	TTSAA	3 cut(s)	320, 382, 524
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	757
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	7 cut(s)	26, 119, 249, 284, 292, 491, 950
AluI	AGCT	7 cut(s)	26, 119, 249, 284, 292, 491, 950
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	5 cut(s)	12, 83, 731, 844, 850
AlwI	GGATC	3 cut(s)	41, 749, 948
Ama87I	CYCGRG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	5 cut(s)	67, 425, 494, 665, 760
ApeKI	GCWGC	3 cut(s)	110, 143, 581
ApoI	RAATTY	2 cut(s)	803, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AseI	ATTAAT	1 cut(s)	915
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	4 cut(s)	67, 494, 665, 865
AsuC2I	CCSGG	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	879
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	1 cut(s)	865
BalI	TGGCCA	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	97, 130, 568
BceAI	ACGGC	2 cut(s)	138, 481
BciT130I	CCWGG	1 cut(s)	759
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	5 cut(s)	12, 83, 731, 844, 850
BfmI	CTRYAG	1 cut(s)	691
BisI	GCNGC	7 cut(s)	92, 95, 111, 126, 144, 177, 582
BlsI	GCNGC	7 cut(s)	93, 96, 112, 127, 145, 178, 583
Bme1390I	CCNGG	2 cut(s)	75, 759
Bme18I	GGWCC	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	4 cut(s)	67, 494, 665, 865
BmiI	GGNNCC	4 cut(s)	465, 867, 905, 974
BmrFI	CCNGG	2 cut(s)	75, 759
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	888
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	12, 468
BpuMI	CCSGG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 104, 460
Bse1I	ACTGG	6 cut(s)	109, 132, 311, 572, 620, 828
Bse3DI	GCAATG	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	2 cut(s)	199, 445
BseLI	CCNNNNNNNGG	3 cut(s)	29, 104, 460
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	2 cut(s)	806, 845
BseNI	ACTGG	6 cut(s)	109, 132, 311, 572, 620, 828
BseXI	GCAGC	3 cut(s)	97, 130, 568
BseYI	CCCAGC	2 cut(s)	22, 491
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	164, 179
BshFI	GGCC	5 cut(s)	69, 427, 496, 667, 762
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	74, 214
BslFI	GGGAC	2 cut(s)	412, 912
BslI	CCNNNNNNNGG	3 cut(s)	29, 104, 460
BsmAI	GTCTC	5 cut(s)	12, 83, 731, 844, 850
BsmFI	GGGAC	2 cut(s)	412, 912
BsnI	GGCC	5 cut(s)	69, 427, 496, 667, 762
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	929
Bsp119I	TTCGAA	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
BspACI	CCGC	7 cut(s)	92, 95, 125, 162, 177, 191, 901
BspANI	GGCC	5 cut(s)	69, 427, 496, 667, 762
BspCNI	CTCAG	2 cut(s)	805, 846
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	164, 179
BspLI	GGNNCC	4 cut(s)	465, 867, 905, 974
BspPI	GGATC	3 cut(s)	41, 749, 948
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	879
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	6 cut(s)	109, 132, 311, 572, 620, 828
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
BssNAI	GTATAC	1 cut(s)	225
Bst1107I	GTATAC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	5 cut(s)	222, 343, 673, 695, 742
Bst6I	CTCTTC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	879
BstC8I	GCNNGC	3 cut(s)	148, 168, 764
BstDEI	CTNAG	2 cut(s)	792, 854
BstF5I	GGATG	2 cut(s)	199, 445
BstFNI	CGCG	2 cut(s)	164, 179
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	6 cut(s)	49, 199, 301, 748, 757, 943
BstMAI	GTCTC	5 cut(s)	12, 83, 731, 844, 850
BstMBI	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 125, 176, 708
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	73, 757
BstSFI	CTRYAG	1 cut(s)	691
BstUI	CGCG	2 cut(s)	164, 179
BstV1I	GCAGC	3 cut(s)	97, 130, 568
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	225
BsuRI	GGCC	5 cut(s)	69, 427, 496, 667, 762
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	199, 445
BtsIMutI	CAGTG	1 cut(s)	835
Cac8I	GCNNGC	3 cut(s)	148, 168, 764
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	4 cut(s)	67, 494, 665, 865
CseI	GACGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	135, 413
CviAII	CATG	4 cut(s)	52, 362, 410, 527
CviQI	GTAC	2 cut(s)	135, 413
DdeI	CTNAG	2 cut(s)	792, 854
DpnI	GATC	6 cut(s)	48, 198, 300, 747, 756, 942
DpnII	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
EaeI	YGGCCR	2 cut(s)	425, 760
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	99, 272
Eco88I	CYCGRG	1 cut(s)	929
EcoRII	CCWGG	1 cut(s)	757
FaeI	CATG	4 cut(s)	55, 365, 413, 530
FaqI	GGGAC	2 cut(s)	412, 912
FatI	CATG	4 cut(s)	51, 361, 409, 526
FauNDI	CATATG	1 cut(s)	962
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	7 cut(s)	92, 95, 111, 126, 144, 177, 582
FokI	GGATG	2 cut(s)	206, 432
Fsp4HI	GCNGC	7 cut(s)	92, 95, 111, 126, 144, 177, 582
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	7 cut(s)	92, 95, 111, 126, 144, 177, 582
GsaI	CCCAGC	2 cut(s)	26, 495
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	5 cut(s)	69, 427, 496, 667, 762
HapII	CCGG	2 cut(s)	74, 214
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	4 cut(s)	55, 365, 413, 530
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	2 cut(s)	577, 625
HindII	GTYRAC	2 cut(s)	577, 625
HinfI	GANTC	3 cut(s)	13, 442, 548
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	74, 214
Hpy166II	GTNNAC	5 cut(s)	225, 407, 538, 577, 625
Hpy188I	TCNGA	6 cut(s)	12, 201, 390, 514, 812, 977
Hpy188III	TCNNGA	7 cut(s)	214, 240, 278, 302, 349, 929, 938
Hpy8I	GTNNAC	5 cut(s)	225, 407, 538, 577, 625
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	4 cut(s)	80, 376, 644, 648
HpyCH4III	ACNGT	5 cut(s)	222, 343, 673, 695, 742
HpyCH4IV	ACGT	2 cut(s)	152, 627
HpyCH4V	TGCA	5 cut(s)	150, 170, 365, 584, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 125, 176, 708
HpyF3I	CTNAG	2 cut(s)	792, 854
HpySE526I	ACGT	2 cut(s)	152, 627
Hsp92II	CATG	4 cut(s)	55, 365, 413, 530
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	256, 262, 469, 978
Lsp1109I	GCAGC	3 cut(s)	97, 130, 568
LweI	GCATC	1 cut(s)	888
MaeII	ACGT	2 cut(s)	152, 627
MaeIII	GTNAC	2 cut(s)	302, 673
MalI	GATC	6 cut(s)	48, 198, 300, 747, 756, 942
MboI	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
MboII	GAAGA	5 cut(s)	147, 278, 322, 325, 403
MfeI	CAATTG	2 cut(s)	555, 860
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	9 cut(s)	555, 639, 721, 803, 834, 860, 874, 916, 952
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	6 cut(s)	426, 426, 432, 517, 562, 917
Mox20I	TGGCCA	1 cut(s)	762
MroI	TCCGGA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	3 cut(s)	576, 642, 915
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	74, 214
MspR9I	CCNGG	2 cut(s)	75, 759
MunI	CAATTG	2 cut(s)	555, 860
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	2 cut(s)	164, 179
MwoI	GCNNNNNNNGC	4 cut(s)	116, 125, 176, 708
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	962
NdeII	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
NlaIII	CATG	4 cut(s)	55, 365, 413, 530
NlaIV	GGNNCC	4 cut(s)	465, 867, 905, 974
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	302
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	1 cut(s)	879
PciI	ACATGT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	13, 548
PkrI	GCNGC	7 cut(s)	93, 96, 112, 127, 145, 178, 583
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PscI	ACATGT	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	915
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	757
PspFI	CCCAGC	2 cut(s)	22, 491
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	4 cut(s)	465, 867, 905, 974
PspPI	GGNCC	4 cut(s)	67, 494, 665, 865
PsuI	RGATCY	1 cut(s)	754
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	136, 414
RsaNI	GTAC	2 cut(s)	135, 413
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	576, 642, 915
SatI	GCNGC	7 cut(s)	92, 95, 111, 126, 144, 177, 582
Sau3AI	GATC	6 cut(s)	46, 196, 298, 745, 754, 940
Sau96I	GGNCC	4 cut(s)	67, 494, 665, 865
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	75, 759
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	888
SfcI	CTRYAG	1 cut(s)	691
SfuI	TTCGAA	1 cut(s)	879
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	27, 483
SmoI	CTYRAG	2 cut(s)	27, 483
Sse9I	AATT	9 cut(s)	555, 639, 721, 803, 834, 860, 874, 916, 952
SsiI	CCGC	7 cut(s)	92, 95, 125, 162, 177, 191, 901
StyD4I	CCNGG	2 cut(s)	73, 757
TaaI	ACNGT	5 cut(s)	222, 343, 673, 695, 742
TaiI	ACGT	2 cut(s)	155, 630
TaqI	TCGA	5 cut(s)	182, 239, 279, 748, 879
TasI	AATT	9 cut(s)	555, 639, 721, 803, 834, 860, 874, 916, 952
TauI	GCSGC	4 cut(s)	94, 97, 128, 179
TfiI	GAWTC	2 cut(s)	13, 548
Tru1I	TTAA	3 cut(s)	576, 642, 915
Tru9I	TTAA	3 cut(s)	576, 642, 915
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	3 cut(s)	110, 143, 581
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	68, 720
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	865
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	2 cut(s)	803, 874
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.