Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Reverse (-)

13197368 .. 13202122

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGTCTGTAAACCCAAACCCAGCGCCTCAGGGTTTTTACCTATTCGATCCCACCAATATGGGCCTCCCGGGACTCAATTCCATGCCGCCGCCGACGACGCCTTCTACGACAAGCACCACCATGTCGTCGGCGGCCCAAAACGCCGCGTCGTTGGCCGAGGATCAGAGCAAGAAGATCCGGAAGCCGTATACTATTACCAAGTCCAGGGAGAGCTGGACTGACCAGGAACATGACAAGTTTCTAGAAGCTCTCCAGCTATTCGACCGGGACTGGAAGAAGATTGAAGCTTTTGTTGGCTCAAAAACGGTTATCCAGATACGTAGCCATGCACAAAAGTACTTTTTGAAGGTTCAGAAAAAAGGGACAAGCGAGCATGTACCTCCTCCTCGGCCAAAGAGGAAAGCAACTCATCCATATCCACAAAAAGCTCCTAAAAGTGCTCCAGTAGTATCTCAAGTCGTTGGACCATTTGAATCCTCATCTGCTTTGCTTGAACATGGATATACCTACCAGCCAGATTCTTCATTTGTGCATAGCACTCCTGTTACTAGTGCAACTTTATCTTCCTGGAGTCATAGTTACGTGCCTCCTGTCAACGCGTCACAAAAAACTAAAGATGATGGAAGGCTAGCTGGTTCAGCAGATGCACAGAACTCTTGTTACAGTAGTAGTAACGAAAGCAAACCTACAACTTGGTCAATGGGTGAGACATTTGGTCGCGCATGTCATCACCAGCCACAGAGAGTTTTGCCGGATTTCGCTCAGGTGTATAAATTCATCGGCAGTGTATTTGACCCCGATTCGACTTGTCATTTGGAGAGACTGAAACAAATGGACCCTATAAATTTGGAAACAGCACTTTTGTTGATGCGAAATCTATCCATTAATTTAAGTAGTCCCGAGTTTGAGAATCATAGAAAATTACTTTTATCATATGCCACGGACTCTGAGATAGCTAAACCTGATAACAATAGCGGCTTTTCTTGCTATGGTAAATCAGAGAATGCCATCCTGTCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

342

Amino Acids

37.71

Weight (kDa)

8.71

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	70 - 115	1.6e-11	Myb-like DNA-binding domain
RVE6	PF24904	251 - 313	3.9e-35	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	191, 1019
AccII	CGCG	3 cut(s)	149, 602, 723
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	89, 92, 134, 147, 978
AclWI	GGATC	3 cut(s)	44, 171, 172
AcoI	YGGCCR	2 cut(s)	156, 392
AcsI	RAATTY	2 cut(s)	776, 847
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	341, 381
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	287, 349, 476, 497
AhdI	GACNNNNNGTC	1 cut(s)	717
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	3 cut(s)	206, 225, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	7 cut(s)	216, 251, 259, 290, 431, 635, 959
AluI	AGCT	7 cut(s)	216, 251, 259, 290, 431, 635, 959
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	704, 817
AlwI	GGATC	3 cut(s)	44, 171, 172
Ama87I	CYCGRG	2 cut(s)	70, 902
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	4 cut(s)	64, 135, 156, 392
ApoI	RAATTY	2 cut(s)	776, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
AseI	ATTAAT	1 cut(s)	888
AspLEI	GCGC	2 cut(s)	28, 725
AspS9I	GGNCC	4 cut(s)	64, 136, 467, 838
AsuC2I	CCSGG	3 cut(s)	71, 72, 269
AsuHPI	GGTGA	2 cut(s)	719, 725
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	2 cut(s)	70, 902
AvaII	GGWCC	2 cut(s)	467, 838
AxyI	CCTNAGG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	2 cut(s)	617, 1019
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	3 cut(s)	208, 227, 571
BcnI	CCSGG	3 cut(s)	71, 72, 269
BcoDI	GTCTC	2 cut(s)	704, 817
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	3 cut(s)	245, 552, 632
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	5 cut(s)	89, 92, 135, 147, 979
BlsI	GCNGC	5 cut(s)	90, 93, 136, 148, 980
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	6 cut(s)	71, 72, 208, 227, 269, 571
Bme18I	GGWCC	2 cut(s)	467, 838
BmeRI	GACNNNNNGTC	1 cut(s)	717
BmeT110I	CYCGRG	2 cut(s)	70, 902
BmgT120I	GGNCC	4 cut(s)	64, 136, 467, 838
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	6 cut(s)	71, 72, 208, 227, 269, 571
BmsI	GCATC	2 cut(s)	637, 861
BmtI	GCTAGC	1 cut(s)	635
BpmI	CTGGAG	3 cut(s)	239, 429, 592
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	3 cut(s)	71, 72, 269
BsaAI	YACGTR	2 cut(s)	323, 586
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	5 cut(s)	70, 159, 207, 389, 942
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	278, 446
Bse21I	CCTNAGG	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	208, 227, 571
BseDI	CCNNGG	5 cut(s)	70, 159, 207, 389, 942
BseGI	GGATG	2 cut(s)	412, 1011
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	44, 779, 942
BseNI	ACTGG	2 cut(s)	278, 446
BseRI	GAGGAG	2 cut(s)	375, 378
BseYI	CCCAGC	1 cut(s)	22
Bsh1236I	CGCG	3 cut(s)	149, 602, 723
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	66, 137, 158, 394
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	2 cut(s)	70, 902
BsiSI	CCGG	4 cut(s)	71, 181, 268, 755
BslFI	GGGAC	4 cut(s)	87, 284, 379, 885
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	704, 817
BsmFI	GGGAC	4 cut(s)	87, 284, 379, 885
BsmI	GAATGC	1 cut(s)	1012
BsnI	GGCC	4 cut(s)	66, 137, 158, 394
BsoBI	CYCGRG	2 cut(s)	70, 902
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	49, 163, 177
BspACI	CCGC	5 cut(s)	89, 92, 134, 147, 978
BspANI	GGCC	4 cut(s)	66, 137, 158, 394
BspCNI	CTCAG	3 cut(s)	43, 778, 943
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	149, 602, 723
BspLI	GGNNCC	1 cut(s)	840
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	44, 171, 172
BsrI	ACTGG	2 cut(s)	278, 446
BssECI	CCNNGG	5 cut(s)	70, 159, 207, 389, 942
BssMI	GATC	3 cut(s)	49, 163, 177
BssNAI	GTATAC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	101
Bst1107I	GTATAC	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	208, 227, 571
Bst4CI	ACNGT	2 cut(s)	310, 668
BstACI	GRCGYC	1 cut(s)	101
BstBAI	YACGTR	2 cut(s)	323, 586
BstC8I	GCNNGC	2 cut(s)	374, 633
BstDEI	CTNAG	4 cut(s)	30, 765, 951, 1023
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	2 cut(s)	412, 1011
BstFNI	CGCG	3 cut(s)	149, 602, 723
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 725
BstKTI	GATC	3 cut(s)	52, 166, 180
BstMAI	GTCTC	2 cut(s)	704, 817
BstMBI	GATC	3 cut(s)	49, 163, 177
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 143, 155, 641, 987
BstNI	CCWGG	3 cut(s)	208, 227, 571
BstNSI	RCATGY	2 cut(s)	380, 729
BstSCI	CCNGG	6 cut(s)	69, 70, 206, 225, 267, 569
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	3 cut(s)	149, 602, 723
BstX2I	RGATCY	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	66, 137, 158, 394
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	412, 1011
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	374, 633
CfoI	GCGC	2 cut(s)	28, 725
Cfr13I	GGNCC	4 cut(s)	64, 136, 467, 838
Cfr9I	CCCGGG	1 cut(s)	70
CseI	GACGC	3 cut(s)	109, 138, 591
Csp6I	GTAC	2 cut(s)	340, 380
CviAII	CATG	7 cut(s)	85, 124, 233, 329, 377, 500, 726
CviQI	GTAC	2 cut(s)	340, 380
DdeI	CTNAG	4 cut(s)	30, 765, 951, 1023
DpnI	GATC	3 cut(s)	51, 165, 179
DpnII	GATC	3 cut(s)	49, 163, 177
DriI	GACNNNNNGTC	1 cut(s)	717
EaeI	YGGCCR	2 cut(s)	156, 392
Eam1105I	GACNNNNNGTC	1 cut(s)	717
Eco105I	TACGTA	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	467, 838
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	2 cut(s)	70, 902
EcoRII	CCWGG	3 cut(s)	206, 225, 569
FaeI	CATG	7 cut(s)	88, 127, 236, 332, 380, 503, 729
FaqI	GGGAC	4 cut(s)	87, 284, 379, 885
FatI	CATG	7 cut(s)	84, 123, 232, 328, 376, 499, 725
FauNDI	CATATG	1 cut(s)	937
FblI	GTMKAC	2 cut(s)	191, 1019
Fnu4HI	GCNGC	5 cut(s)	89, 92, 135, 147, 979
FokI	GGATG	2 cut(s)	399, 998
Fsp4HI	GCNGC	5 cut(s)	89, 92, 135, 147, 979
FspBI	CTAG	3 cut(s)	245, 552, 632
GlaI	GCGC	2 cut(s)	27, 724
GluI	GCNGC	5 cut(s)	89, 92, 135, 147, 979
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	3 cut(s)	239, 429, 592
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	66, 137, 158, 394
HapII	CCGG	4 cut(s)	71, 181, 268, 755
HgaI	GACGC	3 cut(s)	109, 138, 591
HhaI	GCGC	2 cut(s)	28, 725
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	88, 127, 236, 332, 380, 503, 729
Hin6I	GCGC	2 cut(s)	26, 723
HinP1I	GCGC	2 cut(s)	26, 723
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	7 cut(s)	75, 476, 521, 574, 803, 913, 947
HpaII	CCGG	4 cut(s)	71, 181, 268, 755
HphI	GGTGA	2 cut(s)	719, 725
Hpy166II	GTNNAC	4 cut(s)	13, 192, 598, 1020
Hpy188I	TCNGA	4 cut(s)	168, 357, 952, 1003
Hpy188III	TCNNGA	4 cut(s)	181, 245, 316, 902
Hpy8I	GTNNAC	4 cut(s)	13, 192, 598, 1020
Hpy99I	CGWCG	4 cut(s)	100, 103, 133, 154
HpyAV	CCTTC	3 cut(s)	114, 343, 621
HpyCH4III	ACNGT	2 cut(s)	310, 668
HpyCH4IV	ACGT	2 cut(s)	322, 585
HpyCH4V	TGCA	4 cut(s)	332, 535, 557, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 143, 155, 641, 987
HpyF3I	CTNAG	4 cut(s)	30, 765, 951, 1023
HpySE526I	ACGT	2 cut(s)	322, 585
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	7 cut(s)	88, 127, 236, 332, 380, 503, 729
HspAI	GCGC	2 cut(s)	26, 723
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	49, 163, 177
LmnI	GCTCC	2 cut(s)	436, 448
LweI	GCATC	2 cut(s)	637, 861
MaeI	CTAG	3 cut(s)	245, 552, 632
MaeII	ACGT	2 cut(s)	322, 585
MaeIII	GTNAC	5 cut(s)	547, 581, 603, 662, 674
MalI	GATC	3 cut(s)	51, 165, 179
MboI	GATC	3 cut(s)	49, 163, 177
MboII	GAAGA	5 cut(s)	187, 289, 292, 516, 558
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	5 cut(s)	79, 776, 847, 889, 923
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	3 cut(s)	69, 583, 941
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	9 cut(s)	39, 77, 154, 393, 393, 396, 399, 490, 600
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	2 cut(s)	888, 893
MslI	CAYNNNNRTG	2 cut(s)	59, 122
MspI	CCGG	4 cut(s)	71, 181, 268, 755
MspR9I	CCNGG	6 cut(s)	71, 72, 208, 227, 269, 571
Mva1269I	GAATGC	1 cut(s)	1012
MvaI	CCWGG	3 cut(s)	208, 227, 571
MvnI	CGCG	3 cut(s)	149, 602, 723
MwoI	GCNNNNNNNGC	5 cut(s)	100, 143, 155, 641, 987
NciI	CCSGG	3 cut(s)	71, 72, 269
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	3 cut(s)	49, 163, 177
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	7 cut(s)	88, 127, 236, 332, 380, 503, 729
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	2 cut(s)	184, 370
NmuCI	GTSAC	1 cut(s)	603
NspI	RCATGY	2 cut(s)	380, 729
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1012
PfeI	GAWTC	4 cut(s)	476, 521, 803, 913
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	5 cut(s)	90, 93, 136, 148, 980
PleI	GAGTC	3 cut(s)	69, 582, 941
PpsI	GAGTC	3 cut(s)	69, 582, 941
Ppu21I	YACGTR	2 cut(s)	323, 586
PshBI	ATTAAT	1 cut(s)	888
Psp6I	CCWGG	3 cut(s)	206, 225, 569
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	3 cut(s)	206, 225, 569
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	4 cut(s)	64, 136, 467, 838
PsrI	GAACNNNNNNTAC	2 cut(s)	647, 679
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	341, 381
RsaNI	GTAC	2 cut(s)	340, 380
RseI	CAYNNNNRTG	2 cut(s)	59, 122
SaqAI	TTAA	2 cut(s)	888, 893
SatI	GCNGC	5 cut(s)	89, 92, 135, 147, 979
Sau3AI	GATC	3 cut(s)	49, 163, 177
Sau96I	GGNCC	4 cut(s)	64, 136, 467, 838
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	3 cut(s)	69, 583, 941
ScrFI	CCNGG	6 cut(s)	71, 72, 208, 227, 269, 571
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	637, 861
SinI	GGWCC	2 cut(s)	467, 838
SmaI	CCCGGG	1 cut(s)	72
SmiMI	CAYNNNNRTG	2 cut(s)	59, 122
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SnaBI	TACGTA	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	79, 776, 847, 889, 923
SsiI	CCGC	5 cut(s)	89, 92, 134, 147, 978
SspMI	CTAG	3 cut(s)	245, 552, 632
StyD4I	CCNGG	6 cut(s)	69, 70, 206, 225, 267, 569
TaaI	ACNGT	2 cut(s)	310, 668
TaiI	ACGT	2 cut(s)	325, 588
TaqI	TCGA	3 cut(s)	48, 264, 806
TasI	AATT	5 cut(s)	79, 776, 847, 889, 923
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	5 cut(s)	91, 94, 137, 149, 981
TfiI	GAWTC	4 cut(s)	476, 521, 803, 913
Tru1I	TTAA	2 cut(s)	888, 893
Tru9I	TTAA	2 cut(s)	888, 893
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	603
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	2 cut(s)	516, 769
TspGWI	ACGGA	1 cut(s)	959
TspMI	CCCGGG	1 cut(s)	70
TspRI	CASTG	1 cut(s)	793
VpaK11BI	GGWCC	2 cut(s)	467, 838
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	2 cut(s)	776, 847
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	380, 729
XmaI	CCCGGG	1 cut(s)	70
XmiI	GTMKAC	2 cut(s)	191, 1019
XspI	CTAG	3 cut(s)	245, 552, 632
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.