Rroxscaffold_4G00298820
MYB Family

reveille

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006457
Physical Location & Seq
Forward (+)
18696582 .. 18701363
4782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298820.1

Sequence Viewer

Length: 324 bp
ATGGGTGAGACAGTTGGTCGAGCATGTCATCGCCAGCCACAGAGAGTTTTGCCAGATTTTGCTCAGGTGTATAAATTCATCGGCAGTGTTTTTGACCCCAATTCGACTAGTCATTTGGAGAGACTGAAACAAATGGACCCTATAAATTTGGAGACAGCACTTTTGTTGATGCGAAATCTATCCATTAATTTAAGAAGTCCCGAGTTTGAGGATCATAGAAGGATACTTTTATCATATGAAACGAAATCTGAGAAAGCTAAACCTGAGAACGGTTGCAACTTTTCTTGCCATGGTAAATCGGAGAATGCCATCCTATCTACTTAG

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

7.77

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVE6 PF24904 17 - 79 3.6e-36 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 74, 145
AfiI CCNNNNNNNGG 1 cut(s) 269
AhdI GACNNNNNGTC 1 cut(s) 15
AhlI ACTAGT 1 cut(s) 107
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 3 cut(s) 2, 115, 146
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 200
ApoI RAATTY 2 cut(s) 74, 145
ArsI GACNNNNNNTTYG 4 cut(s) 97, 129, 145, 177
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 136
BccI CCATC 1 cut(s) 317
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 3 cut(s) 2, 115, 146
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 1 cut(s) 108
BfuI GTATCC 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 77, 240, 255
BsiHKCI CYCGRG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 3 cut(s) 2, 115, 146
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 310
BsoBI CYCGRG 1 cut(s) 200
Bsp143I GATC 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 289
BspCNI CTCAG 3 cut(s) 76, 241, 256
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 13, 272
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 4 cut(s) 63, 249, 264, 321
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 3 cut(s) 2, 115, 146
BstMBI GATC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 27
BsuI GTATCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 2 cut(s) 24, 290
CviJI RGCY 2 cut(s) 37, 257
CviKI_1 RGCY 2 cut(s) 37, 257
DdeI CTNAG 4 cut(s) 63, 249, 264, 321
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 27, 293
FaiI YATR 7 cut(s) 25, 72, 143, 216, 235, 237, 291
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 23, 289
FauNDI CATATG 1 cut(s) 235
FokI GGATG 1 cut(s) 296
FspBI CTAG 1 cut(s) 108
Hin1II CATG 2 cut(s) 27, 293
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 250, 301
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 13, 272
HpyCH4V TGCA 1 cut(s) 276
HpyF3I CTNAG 4 cut(s) 63, 249, 264, 321
Hsp92II CATG 2 cut(s) 27, 293
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 47, 50, 66, 276
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 108
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MluCI AATT 4 cut(s) 74, 100, 145, 187
MnlI CCTC 1 cut(s) 202
MseI TTAA 2 cut(s) 186, 191
Mva1269I GAATGC 1 cut(s) 310
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 27, 293
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 27
PctI GAATGC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 186, 191
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 136
SetI ASST 3 cut(s) 69, 259, 265
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 4 cut(s) 74, 100, 145, 187
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 13, 272
TaqI TCGA 2 cut(s) 19, 104
TasI AATT 4 cut(s) 74, 100, 145, 187
Tru1I TTAA 2 cut(s) 186, 191
Tru9I TTAA 2 cut(s) 186, 191
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 67, 252
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 2 cut(s) 74, 145
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.