Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006457

Physical Location & Seq

Genomic Coordinates Forward (+)

535198 .. 538098

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGTCCGTAAACCCTAGACCTAAGGGTTTTCCAGTTTTCGATTCCTCGAATATGAGTTTACCAAGCTCCGATGGATTTGGTTCGATTCCGGCCACGGGACGGACCAGTACGGTGTCGTTTTCTGAGGATCCGACGACGAAGATTCGGAAGCCGTACACAATCAAGAAGTCGAGAGAGAATTGGACAGATCAAGAGCACGATAAATTTCTAGAAGCTCTTCACTTATTCGATAGGGATTGGAAGAAAATAGAAGCCTTTGTTGGATCAAAAACAGTAGTTCAGATACGAAGCCACGCTCAGAAATACTTTCTCAAAGTTCAGAAGAGTGGTGCTAACGAACATCTTCCACCTCCTCGACCTAAGAGGAAAGCGAGTCATCCTTATCCTATAAAGGCTCCTAAAAATGTTGCTTATACCTCTCTCCCGTCTTCGAGTACATTACCGTTGCTTGAGCCTGGTTATTTGTATAGCTCTGATTCGAAGTCATTGATGGGAAACCAGGCTGTTTGTGCATCTACCTCTTCTTCGTGGAATCATGAATCGACAAATCTGCCAAAACCGGTGATTGAAGAGGAACCGGGAGTCTCGGCCACGGCTCCTCTCCCAAATAATCGCTGCAGACAGGAAGATACAGAGAGGGTACGAGCAGTGACAAAGCCAAATAACGAAGAAAGTTGTGAAAAGCCACATAGAGTGATGCCGAATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTCTTCGATCCCAACACATCAGGCCACCTCCAGAGATTAAAGCAGATGGATCCAATAAATATGGAAACGGTTCTTTTACTGATGCAAAACCTGTCTGTAAATCTGACAAGTCCCGAGTTTGCAGAGCAAAGGAGGTTGATATCATCATACAGCGCTAAAGCTTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.79

Weight (kDa)

9.28

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	59 - 104	3.5e-12	Myb-like DNA-binding domain
RVE6	PF24904	234 - 296	6.9e-36	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT1G01520 AT4G01280 AT4G01280
fragaria_vesca	FvH4_7g15140 FvH4_7g15140 FvH4_7g15140
malus_domestica	MD01G1070000.v1.1 MD07G1132500.v1.1
prunus_persica	Prupe.2G176200_v2.0.a1 Prupe.2G176200_v2.0.a1
pyrus_communis	pycom07g12930
rosa_chinensis	RchiOBHm_Chr1g0357331
rosa_laevigata	RLG00000028026
rosa_multiflora	Rmu_sc0003245.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298820
rosa_rugosa	Rorug01G0256500
rosa_samantha	Rh1AG269700 Rh1BG237600 Rh1CG253900 Rh1DG265500
rosa_wichuraiana	Rw1G023900 Rw1G023950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	125, 138, 274, 740, 782, 795
AcoI	YGGCCR	2 cut(s)	93, 591
AcsI	RAATTY	2 cut(s)	206, 706
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	4 cut(s)	112, 158, 439, 645
AfeI	AGCGCT	1 cut(s)	892
AfiI	CCNNNNNNNGG	2 cut(s)	98, 102
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	2 cut(s)	572, 904
AjnI	CCWGG	2 cut(s)	457, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	5 cut(s)	69, 218, 474, 726, 899
AluI	AGCT	5 cut(s)	69, 218, 474, 726, 899
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	6 cut(s)	125, 138, 274, 740, 782, 795
Ama87I	CYCGRG	1 cut(s)	851
Aor51HI	AGCGCT	1 cut(s)	892
AoxI	GGCC	3 cut(s)	93, 591, 760
ApeKI	GCWGC	1 cut(s)	618
ApoI	RAATTY	2 cut(s)	206, 706
AsiGI	ACCGGT	1 cut(s)	562
Asp700I	GAANNNNTTC	3 cut(s)	219, 345, 807
AspLEI	GCGC	1 cut(s)	893
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	582
AsuHPI	GGTGA	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	2 cut(s)	130, 787
BbsI	GAAGAC	2 cut(s)	423, 733
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	3 cut(s)	68, 487, 778
BceAI	ACGGC	2 cut(s)	139, 612
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BciT130I	CCWGG	2 cut(s)	459, 503
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	2 cut(s)	18, 212
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	894
BisI	GCNGC	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	620
Bme1390I	CCNGG	3 cut(s)	459, 503, 582
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	5 cut(s)	132, 399, 579, 600, 789
BmrFI	CCNGG	3 cut(s)	459, 503, 582
BmsI	GCATC	3 cut(s)	524, 690, 810
BpiI	GAAGAC	2 cut(s)	423, 733
BpmI	CTGGAG	1 cut(s)	752
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	96, 594
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 102
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	35, 108
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	459, 503
BseDI	CCNNGG	2 cut(s)	96, 594
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	98, 102
BseMII	CTCAG	2 cut(s)	117, 314
BseNI	ACTGG	2 cut(s)	35, 108
BseRI	GAGGAG	2 cut(s)	345, 591
BseXI	GCAGC	1 cut(s)	605
BshFI	GGCC	3 cut(s)	95, 593, 762
BshTI	ACCGGT	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	92, 563, 581
BslFI	GGGAC	2 cut(s)	114, 834
BslI	CCNNNNNNNGG	2 cut(s)	98, 102
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	114, 834
BsnI	GGCC	3 cut(s)	95, 593, 762
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	5 cut(s)	130, 190, 266, 745, 787
BspANI	GGCC	3 cut(s)	95, 593, 762
BspCNI	CTCAG	2 cut(s)	118, 313
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	5 cut(s)	132, 399, 579, 600, 789
BspMAI	CTGCAG	1 cut(s)	623
BspPI	GGATC	6 cut(s)	125, 138, 274, 740, 782, 795
BspQI	GCTCTTC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	35, 108
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	96, 594
BssMI	GATC	5 cut(s)	130, 190, 266, 745, 787
Bst2UI	CCWGG	2 cut(s)	459, 503
Bst4CI	ACNGT	4 cut(s)	115, 277, 447, 808
Bst6I	CTCTTC	4 cut(s)	225, 320, 529, 567
BstBI	TTCGAA	1 cut(s)	482
BstDEI	CTNAG	4 cut(s)	24, 126, 300, 363
BstDSI	CCRYGG	2 cut(s)	96, 594
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	894
BstHHI	GCGC	1 cut(s)	893
BstKTI	GATC	5 cut(s)	133, 193, 269, 748, 790
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	5 cut(s)	130, 190, 266, 745, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	459, 503
BstSCI	CCNGG	3 cut(s)	457, 501, 580
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	2 cut(s)	423, 733
BstX2I	RGATCY	2 cut(s)	130, 787
BstYI	RGATCY	2 cut(s)	130, 787
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	95, 593, 762
BtgI	CCRYGG	2 cut(s)	96, 594
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	893
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	111, 157, 438, 644
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	4 cut(s)	111, 157, 438, 644
DdeI	CTNAG	4 cut(s)	24, 126, 300, 363
DpnI	GATC	5 cut(s)	132, 192, 268, 747, 789
DpnII	GATC	5 cut(s)	130, 190, 266, 745, 787
EaeI	YGGCCR	2 cut(s)	93, 591
Eam1104I	CTCTTC	4 cut(s)	225, 320, 529, 567
EarI	CTCTTC	4 cut(s)	225, 320, 529, 567
Eco32I	GATATC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	892
Eco57I	CTGAAG	1 cut(s)	735
Eco81I	CCTNAGG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	457, 501
EcoRV	GATATC	1 cut(s)	879
FaeI	CATG	1 cut(s)	542
FaiI	YATR	8 cut(s)	56, 392, 417, 471, 540, 693, 800, 886
FaqI	GGGAC	2 cut(s)	114, 834
FatI	CATG	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	619
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	2 cut(s)	18, 212
GlaI	GCGC	1 cut(s)	892
GluI	GCNGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	752
HaeII	RGCGCY	1 cut(s)	894
HaeIII	GGCC	3 cut(s)	95, 593, 762
HapII	CCGG	3 cut(s)	92, 563, 581
HhaI	GCGC	1 cut(s)	893
Hin1II	CATG	1 cut(s)	542
Hin6I	GCGC	1 cut(s)	891
HinP1I	GCGC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	897
HinfI	GANTC	8 cut(s)	44, 88, 145, 376, 479, 535, 542, 585
HpaII	CCGG	3 cut(s)	92, 563, 581
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	4 cut(s)	13, 62, 159, 721
Hpy188I	TCNGA	9 cut(s)	73, 127, 135, 150, 285, 303, 324, 478, 843
Hpy188III	TCNNGA	7 cut(s)	166, 174, 194, 212, 539, 769, 851
Hpy8I	GTNNAC	4 cut(s)	13, 62, 159, 721
Hpy99I	CGWCG	2 cut(s)	139, 142
HpyCH4III	ACNGT	4 cut(s)	115, 277, 447, 808
HpyCH4V	TGCA	4 cut(s)	515, 621, 823, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	24, 126, 300, 363
Hsp92II	CATG	1 cut(s)	542
HspAI	GCGC	1 cut(s)	891
Kzo9I	GATC	5 cut(s)	130, 190, 266, 745, 787
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	74, 403, 604
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	3 cut(s)	524, 690, 810
MaeI	CTAG	2 cut(s)	18, 212
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	5 cut(s)	132, 192, 268, 747, 789
MboI	GATC	5 cut(s)	130, 190, 266, 745, 787
MflI	RGATCY	2 cut(s)	130, 787
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	181, 206, 706
MlyI	GAGTC	2 cut(s)	385, 594
MmeI	TCCRAC	2 cut(s)	158, 244
MroXI	GAANNNNTTC	3 cut(s)	219, 345, 807
MseI	TTAA	1 cut(s)	776
MspI	CCGG	3 cut(s)	92, 563, 581
MspR9I	CCNGG	3 cut(s)	459, 503, 582
MvaI	CCWGG	2 cut(s)	459, 503
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	5 cut(s)	130, 190, 266, 745, 787
NlaIII	CATG	1 cut(s)	542
NlaIV	GGNNCC	5 cut(s)	132, 399, 579, 600, 789
NmeAIII	GCCGAG	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	482
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	3 cut(s)	219, 345, 807
PfeI	GAWTC	6 cut(s)	44, 88, 145, 479, 535, 542
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	1 cut(s)	620
PleI	GAGTC	2 cut(s)	384, 593
PpsI	GAGTC	2 cut(s)	384, 593
Psp6I	CCWGG	2 cut(s)	457, 501
PspGI	CCWGG	2 cut(s)	457, 501
PspN4I	GGNNCC	5 cut(s)	132, 399, 579, 600, 789
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	130, 787
RsaI	GTAC	4 cut(s)	112, 158, 439, 645
RsaNI	GTAC	4 cut(s)	111, 157, 438, 644
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	776
SatI	GCNGC	1 cut(s)	619
Sau3AI	GATC	5 cut(s)	130, 190, 266, 745, 787
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	385, 594
ScrFI	CCNGG	3 cut(s)	459, 503, 582
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	3 cut(s)	524, 690, 810
SfcI	CTRYAG	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	181, 206, 706
SspMI	CTAG	2 cut(s)	18, 212
StyD4I	CCNGG	3 cut(s)	457, 501, 580
TaaI	ACNGT	4 cut(s)	115, 277, 447, 808
TasI	AATT	3 cut(s)	181, 206, 706
TatI	WGTACW	1 cut(s)	437
TfiI	GAWTC	6 cut(s)	44, 88, 145, 479, 535, 542
Tru1I	TTAA	1 cut(s)	776
Tru9I	TTAA	1 cut(s)	776
TscAI	CASTG	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	555, 718
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	2 cut(s)	206, 706
XbaI	TCTAGA	1 cut(s)	211
XmnI	GAANNNNTTC	3 cut(s)	219, 345, 807
XspI	CTAG	2 cut(s)	18, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.